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Fiber extraction with an ROI-Image does not work
Closed, ResolvedPublic

Description

How to reproduce:

  • load the gibbs_tracking.fib and .gfa (for geometry reference )
  • use SegmentationView to generate a ROI - Add tool, single slice
  • go to fiber extraction:

    (1) the ROI image although selected is not shown in the 'Input Data' box (2) but the 'Ending in Mask' and 'Passing Mask' buttons are active

    -> take one of them - nothing is extracted ( I suppose that the unchanged label for ROI indicates that no mask is selected and hence nothing to extract )
  • The extraction itself work with the planar figures. I also tried to use the ROI Image generated from the planar figure -> same behaviour.

Added attachment : example ROI for gibbs

Event Timeline

New remote branch pushed: bug-14757-FiberExtraction

[f3e69a]: Merge branch 'bug-14757-FiberExtraction'

Merged commits:

2013-03-20 18:54:14 Peter Neher [e6460d]
setting extracted original fibers as output, not the resampled fibers needed to actually perform the extraction


2013-03-20 18:16:44 Peter Neher [648591]
fixed parameter issue in fiber extraction by binary mask. minor changes to fiberfox level window and selection behaviour.