Generation of a second segmentation with different structures than the first segmentation is currently not possible. The content of the first segmentation is always copied to the second as well.
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Description
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After doublechecking the issue it is more a usability problem. When I generate a new segmentation, I expect to be able to immediatly work with segmentation. It should hence be considered to automatically select the new segmentation as the one that is manipulated.
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This bug has a high severity and was not fixed within the 2013-06 release. Setting target milestone to next release.