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Build python code for Biophotonics
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Description

Setup python framework for biophotonics in MITK.

Event Timeline

User wirkert has pushed new remote branch:

bug-18740-v3_python_biophotonic

[250e22]: Merge branch 'bug-18740-v3_python_biophotonic'

Merged commits:

2015-02-13 16:30:56 Sebastian Wirkert [f23607]
Forgot to check in script last time. Reason for the mesh grid not to work
is normalization. Deactivated normalization for now. Reactivate as soon as
good tests have been written for optimization that can handle normalization.


2015-02-13 16:22:54 Sebastian Wirkert [7d29f7]
Unified data import of random forests and optimization. There still seems
to be a problem with the meshgrid visualization.


2015-02-13 16:10:48 Sebastian Wirkert [adb6a0]
Got rid of the ugly mess of flipped BVFs, Vss parameters in optimization.
Now much less confusing and actually working better. Tests are passing.


2015-02-13 15:20:31 Sebastian Wirkert [495323]
some further changes to make optimization and random forests work.


2015-02-13 15:04:36 Sebastian Wirkert [e319f4]
Adapted other scripts to new structure.


2015-02-13 11:24:26 Sebastian Wirkert [300c7e]
first checkin of python scripts to generate/classify reflectance spectra.

[a028f1]: Merge branch 'bug-18740-v3_python_biophotonic'

Merged commits:

2015-02-18 09:21:32 Sebastian Wirkert [a3c221]
little updata: adapt logistic regression to new architecture.


2015-02-18 09:19:59 Sebastian Wirkert [d3dd85]
Complete architectural restructuring. Introduced submodules.


2015-02-17 19:51:25 Sebastian Wirkert [3234ff]
implemented a csv image reader that can read images created by
ConvertImagesToCsv MiniApp.


2015-02-17 17:43:38 Sebastian Wirkert [b7c4fb]
First very basic version of calculating weights for domain adaption (no parameter optimization yet, very small training set)


2015-02-17 17:42:26 Sebastian Wirkert [3b35f6]
error fixing and tidying up.


2015-02-16 10:08:54 Sebastian Wirkert [e03202]
Documentation and patch for gpumcml added.


2015-02-16 09:20:56 Sebastian Wirkert [66eb62]
tidy up


2015-02-15 16:22:14 Sebastian Wirkert [a42fdc]

  1. Implemented cross-validation and grid search for random forests.
  2. Made function to create "perfect artificial data"
  3. cosmetics

User wirkert has pushed new remote branch:

bug-18740-evaluation_restructuring

User zhangyan has pushed new remote branch:

bug-18740-optimization_yan

User wirkert has pushed new remote branch:

bug-18740-v2_evaluation_restructuring
wirkert removed wirkert as the assignee of this task.
wirkert added a subscriber: wirkert.

Was realized in the susi project

kislinsk changed the task status from Invalid to Spite.Jun 27 2018, 1:30 PM
kislinsk added a project: Bulk Edit.
kislinsk changed the task status from Spite to Invalid.Jun 27 2018, 1:36 PM
kislinsk removed a project: Bulk Edit.