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Open NBIA Dataset - linux mitk workbench- crashes
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Description

I used the following dataset: https://wiki.cancerimagingarchive.net/display/Public/Pelvic+Reference+Data the first Patient:
NBIA Data\Pelvic-Reference-Data\Pelvic-Ref-001\11-14-2012-PRONE ANUS-53967\47654-NewSimCT-65447\
On windows I can open the dataset with mitk without any problems (current master and Installer 18.04.2)
On Linux with both the Installer 18.04.2 and the current master crash with the following error:

System: hanno-Vm
Processor: Unknown P6 family

Cache:           10240
Clock:           3491.000
Physical CPUs:   6
Logical CPUs:    6
Virtual Memory:  Total: 2047            Available: 2046
Physical Memory: Total: 43224           Available: 36852

OSName: Linux

Release:         4.15.0-70-generic
Version:         #79-Ubuntu SMP Tue Nov 12 10:36:11 UTC 2019
Platform:        x86_64
Operating System is 64 bit

ITK Version: 4.13.0
Name Of Probe (Time) Iterations Total (s) Min (s) Mean (s) Max (s) StdDev (s)
Check input for DCM 1 0.003227 0.003227 0.003227 0.003227 0
Condensing 3D blocks 1 1.21593e-05 1.21593e-05 1.21593e-05 1.21593e-05 0
EquiDistantBlocksSorter 1 0.000797033 0.000797033 0.000797033 0.000797033 0
Output 1 0.00124002 0.00124002 0.00124002 0.00124002 0
Reset 1 0.000705957 0.000705957 0.000705957 0.000705957 0
Sorting frames 1 0.0162461 0.0162461 0.0162461 0.0162461 0
Sorting step 0 1 0.00629497 0.00629497 0.00629497 0.00629497 0

Sorting step 1 1 0.00656295 0.00656295 0.00656295 0.00656295 0

#12.140# ERROR: Error encountered when loading DICOM series:/home/kislinsk/MITK-superbuild/ep/src/ITK/Modules/IO/GDCM/src/itkGDCMImageIO.cxx:331:
itk::ERROR: GDCMImageIO(0x4bb14f0): Unhandled PixelFormat: SamplesPerPixel :1
BitsAllocated :1
BitsStored :1
HighBit :0
PixelRepresentation:0
ScalarType found :SINGLEBIT
Aborted (core dumped)

Event Timeline

gaoh renamed this task from Open NBIA Dataset with in the linux mitk workbench- crashes to Open NBIA Dataset - linux mitk workbench- crashes.Dec 3 2019, 2:32 PM
gaoh triaged this task as Low priority.
gaoh created this task.
kislinsk added a project: Auto-closed.
kislinsk added a subscriber: kislinsk.

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