I used the following dataset: https://wiki.cancerimagingarchive.net/display/Public/Pelvic+Reference+Data the first Patient:
NBIA Data\Pelvic-Reference-Data\Pelvic-Ref-001\11-14-2012-PRONE ANUS-53967\47654-NewSimCT-65447\
On windows I can open the dataset with mitk without any problems (current master and Installer 18.04.2)
On Linux with both the Installer 18.04.2 and the current master crash with the following error:
System: hanno-Vm
Processor: Unknown P6 familyCache: 10240 Clock: 3491.000 Physical CPUs: 6 Logical CPUs: 6 Virtual Memory: Total: 2047 Available: 2046 Physical Memory: Total: 43224 Available: 36852OSName: Linux
Release: 4.15.0-70-generic Version: #79-Ubuntu SMP Tue Nov 12 10:36:11 UTC 2019 Platform: x86_64 Operating System is 64 bitITK Version: 4.13.0
Name Of Probe (Time) Iterations Total (s) Min (s) Mean (s) Max (s) StdDev (s)
Check input for DCM 1 0.003227 0.003227 0.003227 0.003227 0
Condensing 3D blocks 1 1.21593e-05 1.21593e-05 1.21593e-05 1.21593e-05 0
EquiDistantBlocksSorter 1 0.000797033 0.000797033 0.000797033 0.000797033 0
Output 1 0.00124002 0.00124002 0.00124002 0.00124002 0
Reset 1 0.000705957 0.000705957 0.000705957 0.000705957 0
Sorting frames 1 0.0162461 0.0162461 0.0162461 0.0162461 0
Sorting step 0 1 0.00629497 0.00629497 0.00629497 0.00629497 0Sorting step 1 1 0.00656295 0.00656295 0.00656295 0.00656295 0
#12.140# ERROR: Error encountered when loading DICOM series:/home/kislinsk/MITK-superbuild/ep/src/ITK/Modules/IO/GDCM/src/itkGDCMImageIO.cxx:331:
itk::ERROR: GDCMImageIO(0x4bb14f0): Unhandled PixelFormat: SamplesPerPixel :1
BitsAllocated :1
BitsStored :1
HighBit :0
PixelRepresentation:0
ScalarType found :SINGLEBIT
Aborted (core dumped)