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LaTeX Warning: There were undefined references
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n=50

set.seed(4)
strip=runif(n,.9,1)
c_ideal=cbind(task="c_ideal",
            rbind(
              data.frame(alg_name="A1",value=runif(n,.9,1),case=1:n),
              data.frame(alg_name="A2",value=runif(n,.8,.89),case=1:n),
              data.frame(alg_name="A3",value=runif(n,.7,.79),case=1:n),
              data.frame(alg_name="A4",value=runif(n,.6,.69),case=1:n),
              data.frame(alg_name="A5",value=runif(n,.5,.59),case=1:n)
            ))

set.seed(1)
c_random=data.frame(task="c_random",
                       alg_name=factor(paste0("A",rep(1:5,each=n))),
                       value=plogis(rnorm(5*n,1.5,1)),case=rep(1:n,times=5)
                       )

strip2=seq(.8,1,length.out=5)
a=permute::allPerms(1:5)
c_worstcase=data.frame(task="c_worstcase",
                     alg_name=c(t(a)),
                     value=rep(strip2,nrow(a)),
                     case=rep(1:nrow(a),each=5)
                     )
c_worstcase=rbind(c_worstcase,
                data.frame(task="c_worstcase",alg_name=1:5,value=strip2,case=max(c_worstcase$case)+1)
          )
c_worstcase$alg_name=factor(c_worstcase$alg_name,labels=paste0("A",1:5))

data_matrix_sim=rbind(c_ideal, c_random, c_worstcase)

   challenge_multiple= challenge=as.challenge(data_matrix_sim, 
                                                 by="task", 
                                                 algorithm="alg_name", case="case", value="value", 
                                                 smallBetter = F)
    ranking=challenge%>%aggregateThenRank(FUN = function(x) quantile(x,probs=.05), # aggregation function, 
                                          na.treat=0, # either "na.rm" to remove missing data, 
                                          ties.method = "min" # a character string specifying 
    )  

    set.seed(1);boot_object=ranking_bootstrapped=ranking%>%bootstrap(nboot=5)
    
    meanRanks=ranking%>%consensus(method = "euclidean") 
    report(ranking, 
           consensus=meanRanks,
           title="multiShortFew",
           file = "multiShortFew", 
           colors=viridis::inferno,       format = "PDF", # format can be "PDF", "HTML" or "Word"
           latex_engine="pdflatex",#LaTeX engine for producing PDF output. Options are "pdflatex", "lualatex", and "xelatex"
           open=T
    )

gives warning

2: LaTeX Warning: Reference `blobByTask' on page 10 undefined on input line 285.
LaTeX Warning: There were undefined references. 

``

Event Timeline

wiesenfa created this task.Aug 7 2020, 2:31 PM
wiesenfa updated the task description. (Show Details)Aug 31 2020, 4:58 PM
wiesenfa claimed this task.Sep 4 2020, 12:00 PM

@eisenman seems to come from "Blob plot similar to the one shown in Section \ref{blobByTask}" in visualizationAcrossTasks.Rmd. Could you please take care of it, you are more familiar with the restructured report

wiesenfa reassigned this task from wiesenfa to eisenman.Sep 4 2020, 12:22 PM
eisenman added a subscriber: aguilera.

The warning is raised because the label is defined when bootstrapping is used but also referenced when bootstrapping is not used.

eisenman moved this task from In Progress to Done on the challengeR (v1.0) board.Sep 18 2020, 5:14 PM