Starting build...
Using build-configuration at: /home/ubuntu/kaapana-internal/build-system/build-configuration.yaml
-----------------------------------------------------------
--------------- loading build-configuration ---------------
-----------------------------------------------------------
Build-mode: private!
build_containers: True
push_containers: False
build_charts: False
push_charts: False
Using http_proxy: http://www-int2.dkfz-heidelberg.de:80
-----------------------------------------------------------
Using default_container_registry: dktk-jip-registry.dkfz.de
-----------------------------------------------------------
Using default_container_project: kaapana
-----------------------------------------------------------
-----------------------------------------------------------
-----------------------------------------------------------
------------------------ CONTAINER ------------------------
-----------------------------------------------------------
Found 90 Dockerfiles
Process 82 containers...
-----------------------------------------------------------
Log: kaapana/shape-organseg:0.1.1
Step: Base-Image Check
Message: Could not resolve base image: ['dktk-jip-registry.dkfz.de/kaapana-public/multiorgansegmentation:v0.9']
-----------------------------------------------------------
-----------------------------------------------------------
Log: processing-internal/organseg-liver-mri:0.9-vdev
Step: Base-Image Check
Message: Could not resolve base image: ['dktk-jip-registry.dkfz.de/processing-internal/liver-organseg-raw:1.0.0']
-----------------------------------------------------------
Container: base-landing-page:0.1.0
1/82
############################ Build Container: local-only/base-landing-page:0.1.0
############################ Build: 00:00:00.27 -> success
Container: dag-installer:0.1.0
2/82
############################ Build Container: local-only/dag-installer:0.1.0
############################ Build: 00:00:00.18 -> success
Container: base-landing-page:0.1.0-vdev
3/82
############################ Build Container: local-only/base-landing-page:0.1.0-vdev
############################ Build: 00:00:00.18 -> success
Container: mitk-base:0.1.0
4/82
############################ Build Container: local-only/mitk-base:0.1.0
############################ Build: 00:00:00.18 -> success
Container: no-vnc-base:0.1.0
5/82
############################ Build Container: local-only/no-vnc-base:0.1.0
############################ Build: 00:00:00.17 -> success
Container: kaapana/kaapana-documentation:0.1-alpha
6/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/kaapana-documentation:0.1-alpha
-----------------------------------------------------------
Log: kaapana/kaapana-documentation:0.1-alpha
Step: Docker build
Message: Build failed!
-----------------------------------------------------------
SkipException: SKIP kaapana/kaapana-documentation:0.1-alpha: build() failed!
{
"log": {
"0": "Sending build context to Docker daemon 1.612MB",
"1": "",
"2": "Step 1/11 : FROM python:3.9-alpine3.12 as build-stage",
"3": " ---> d4d4f50f871a",
"4": "Step 2/11 : LABEL IMAGE=\"kaapana-documentation\"",
"5": " ---> Using cache",
"6": " ---> b28533ed4b96",
"7": "Step 3/11 : LABEL VERSION=\"0.1-alpha\"",
"8": " ---> Using cache",
"9": " ---> fbc4f77aac99",
"10": "Step 4/11 : LABEL CI_IGNORE=\"False\"",
"11": " ---> Using cache",
"12": " ---> 21f357ed6ac1",
"13": "Step 5/11 : COPY ./ /src",
"14": " ---> Using cache",
"15": " ---> ae74b921c038",
"16": "Step 6/11 : WORKDIR /src",
"17": " ---> Using cache",
"18": " ---> 061ccbc2a9de",
"19": "Step 7/11 : RUN apk add --update alpine-sdk zlib-dev jpeg-dev freetype-dev lcms2-dev openjpeg-dev tiff-dev tk-dev tcl-dev",
"20": " ---> Using cache",
"21": " ---> f5aaf2dc1360",
"22": "Step 8/11 : RUN python3 -m pip install -r requirements.txt",
"23": " ---> Using cache",
"24": " ---> 9102ce36b1d0",
"25": "Step 9/11 : RUN make html",
"26": " ---> Running in bb99df3b69c3",
"27": "Running Sphinx v3.2.1",
"28": "\u001b[91m",
"29": "Extension error:",
"30": "Could not import extension sphinxcontrib.mermaid (exception: No module named 'six')",
"31": "\u001b[0m\u001b[91mmake: *** [Makefile:19: html] Error 2",
"32": "\u001b[0m",
"34": "ERROR: The command '/bin/sh -c make html' returned a non-zero code: 2"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/docs/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/kaapana-documentation:0.1-alpha",
"test_done": true,
"timestamp": "1611821458344"
}
Container: kaapana/airflow:1.10.12
7/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/airflow:1.10.12
############################ Build: 00:00:00.16 -> success
Container: kaapana/ctp:0.1.1
8/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/ctp:0.1.1
############################ Build: 00:00:00.21 -> success
Container: kaapana/prometheus:v2.20.1
9/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/prometheus:v2.20.1
############################ Build: 00:00:00.15 -> success
Container: kaapana/alert-manager:v0.21.0
10/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/alert-manager:v0.21.0
############################ Build: 00:00:00.17 -> success
Container: kaapana/kube-state-metrics:v1.9.7
11/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/kube-state-metrics:v1.9.7
############################ Build: 00:00:00.15 -> success
Container: kaapana/grafana:6.4.4
12/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/grafana:6.4.4
############################ Build: 00:00:00.15 -> success
Container: kaapana/busybox:1.31
13/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/busybox:1.31
############################ Build: 00:00:00.15 -> success
Container: kaapana/landing-page-kaapana:0.1.2-vdev
14/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/landing-page-kaapana:0.1.2-vdev
############################ Build: 00:00:00.24 -> success
Container: kaapana/slicer-jl:2020-05-15-89b6bb5
15/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/slicer-jl:2020-05-15-89b6bb5
############################ Build: 00:00:00.16 -> success
Container: kaapana/mitk-volume:0.1.0
16/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/mitk-volume:0.1.0
-----------------------------------------------------------
Log: kaapana/mitk-volume:0.1.0
Step: Docker build
Message: Build failed!
-----------------------------------------------------------
SkipException: SKIP kaapana/mitk-volume:0.1.0: build() failed!
{
"log": {
"0": "Sending build context to Docker daemon 9.216kB",
"1": "",
"2": "Step 1/28 : FROM local-only/mitk-base:0.1.0 as build_container",
"3": " ---> 07c4b5757aa4",
"4": "Step 2/28 : LABEL IMAGE=\"mitk-volume\"",
"5": " ---> Using cache",
"6": " ---> e590659e32e2",
"7": "Step 3/28 : LABEL VERSION=\"0.1.0\"",
"8": " ---> Using cache",
"9": " ---> f1b1db5fa90e",
"10": "Step 4/28 : LABEL CI_IGNORE=\"False\"",
"11": " ---> Using cache",
"12": " ---> 0ce72386891b",
"13": "Step 5/28 : RUN mkdir /opt/mitk-bin",
"14": " ---> Using cache",
"15": " ---> 1d61c57f96a5",
"16": "Step 6/28 : RUN mkdir /opt/bin",
"17": " ---> Using cache",
"18": " ---> dfa4eb05b3e1",
"19": "Step 7/28 : ENV MITK_BRANCH=master",
"20": " ---> Using cache",
"21": " ---> a465e0de445a",
"22": "Step 8/28 : ENV MITK_REV=0f33cec9e310c3f69b6c46795f29c026f7e90dc6",
"23": " ---> Using cache",
"24": " ---> 7e45b4677cab",
"25": "Step 9/28 : RUN git clone --single-branch --branch ${MITK_BRANCH} https://phabricator.mitk.org/source/mitk.git MITK && cd MITK && git checkout ${MITK_REV}",
"26": " ---> Using cache",
"27": " ---> c8cbdf0d40b5",
"28": "Step 10/28 : RUN cmake -G Ninja -S MITK -B MITK-superbuild",
"29": " ---> Using cache",
"30": " ---> 8c0da7290a4d",
"31": "Step 11/28 : RUN cmake -S MITK -B MITK-superbuild -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_TESTING:BOOL=OFF -D MITK_CUSTOM_REVISION_DESC:STRING=MitkVolume",
"32": " ---> Using cache",
"33": " ---> a97be1ed2557",
"34": "Step 12/28 : RUN git config --global url.https://github.com/.insteadOf git://github.com/",
"35": " ---> Using cache",
"36": " ---> 3ef71599a00a",
"37": "Step 13/28 : RUN cmake --build MITK-superbuild",
"38": " ---> Using cache",
"39": " ---> 1117f9e8c7b2",
"40": "Step 14/28 : RUN cmake --build MITK-superbuild/MITK-build --target package",
"41": " ---> Using cache",
"42": " ---> 14239007efcf",
"43": "Step 15/28 : RUN mkdir /opt/final_package",
"44": " ---> Using cache",
"45": " ---> c7f4e60721bc",
"46": "Step 16/28 : RUN cp /opt/MITK-superbuild/MITK-build/MITK-MitkVolume-linux-x86_64.tar.gz /opt/final_package/MITK-MitkVolume-linux-x86_64.tar.gz",
"47": " ---> Using cache",
"48": " ---> 334eb9908cde",
"49": "Step 17/28 : FROM local-only/no-vnc-base:0.1.0",
"50": " ---> 1375bc10a7cf",
"51": "Step 18/28 : RUN mkdir -p /tmp_src /mitk",
"52": " ---> Using cache",
"53": " ---> e8d9c9f54d94",
"54": "Step 19/28 : WORKDIR /tmp_src",
"55": " ---> Using cache",
"56": " ---> e492b938597b",
"57": "Step 20/28 : COPY --from=build_container /opt/final_package/MITK-MitkVolume-linux-x86_64.tar.gz ./mitk.tar.gz",
"58": " ---> Using cache",
"59": " ---> 257e2b02b0b2",
"60": "Step 21/28 : RUN tar -xzf mitk.tar.gz -C ./ && mv ./MITK-MitkVolume-linux-x86_64/* /mitk && rm -rf /tmp_src",
"61": " ---> Using cache",
"62": " ---> a7eac996b3df",
"63": "Step 22/28 : COPY files/startMITK.sh /root/Desktop/",
"64": " ---> Using cache",
"65": " ---> 2bc6bfd1547d",
"66": "Step 23/28 : RUN chmod 0777 /root/Desktop/startMITK.sh",
"67": " ---> Using cache",
"68": " ---> ea72384e8f63",
"69": "Step 24/28 : RUN ln -s /data /root/Desktop/",
"70": " ---> Using cache",
"71": " ---> 0f91191ff882",
"72": "Step 25/28 : WORKDIR /data",
"73": " ---> Using cache",
"74": " ---> 4c64e70d5659",
"75": "Step 26/28 : RUN mkdir /root/Desktop/test-data",
"76": " ---> Using cache",
"77": " ---> 6c631eb1d242",
"78": "Step 27/28 : COPY files/Pic3D.nrrd /root/Desktop/test-data",
"79": "",
"81": "ERROR: COPY failed: stat /var/lib/docker/tmp/docker-builder405572582/files/Pic3D.nrrd: no such file or directory"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/services/applications/mitk-volume/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/mitk-volume:0.1.0",
"test_done": true,
"timestamp": "1611821460114"
}
Container: kaapana/code-server:3.5.0
17/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/code-server:3.5.0
############################ Build: 00:00:00.16 -> success
Container: kaapana/tensorboard:2.3.0
18/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/tensorboard:2.3.0
############################ Build: 00:00:00.16 -> success
Container: kaapana/jupyterlab:2.2.8
19/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/jupyterlab:2.2.8
############################ Build: 00:00:00.17 -> success
Container: kaapana/louketo-proxy:0.1.0
20/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/louketo-proxy:0.1.0
############################ Build: 00:00:00.23 -> success
Container: kaapana/error-pages:1.0.1
21/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/error-pages:1.0.1
############################ Build: 00:00:00.16 -> success
Container: kaapana/service_checker:1.1
22/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/service_checker:1.1
############################ Build: 00:00:00.14 -> success
Container: kaapana/kube-dashboard-metrics:1.0.4
23/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/kube-dashboard-metrics:1.0.4
############################ Build: 00:00:00.14 -> success
Container: kaapana/metrics-server:v0.3.7
24/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/metrics-server:v0.3.7
############################ Build: 00:00:00.17 -> success
Container: kaapana/kube-dashboard:2.0.3
25/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/kube-dashboard:2.0.3
############################ Build: 00:00:00.17 -> success
Container: kaapana/keycloak:11.0.2
26/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/keycloak:11.0.2
############################ Build: 00:00:00.16 -> success
Container: kaapana/gpu-prom-exporter:0.1
27/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/gpu-prom-exporter:0.1
############################ Build: 00:00:00.19 -> success
Container: kaapana/kube-helm:0.1.0
28/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/kube-helm:0.1.0
############################ Build: 00:00:00.18 -> success
Container: kaapana/postgres:9.5-alpine
29/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/postgres:9.5-alpine
############################ Build: 00:00:00.16 -> success
Container: kaapana/postgres:9.6-alpine
30/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/postgres:9.6-alpine
############################ Build: 00:00:00.16 -> success
Container: kaapana/traefik:v2.3
31/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/traefik:v2.3
############################ Build: 00:00:00.16 -> success
Container: kaapana/elasticsearch-oss:6.8.12
32/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/elasticsearch-oss:6.8.12
############################ Build: 00:00:00.16 -> success
Container: kaapana/init-meta:6.8.12
33/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/init-meta:6.8.12
############################ Build: 00:00:00.18 -> success
Container: kaapana/kibana-kaapana:6.8.12
34/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/kibana-kaapana:6.8.12
############################ Build: 00:00:00.17 -> success
Container: kaapana/minio:2020.09.17
35/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/minio:2020.09.17
-----------------------------------------------------------
Log: kaapana/minio:2020.09.17
Step: Docker build
Message: Build failed!
-----------------------------------------------------------
SkipException: SKIP kaapana/minio:2020.09.17: build() failed!
{
"log": {
"0": "Sending build context to Docker daemon 86.53kB",
"1": "",
"2": "Step 1/23 : FROM golang:1.14-alpine as builder",
"3": " ---> 424d62f19476",
"4": "Step 2/23 : LABEL IMAGE=minio",
"5": " ---> Using cache",
"6": " ---> b36a0bdbd248",
"7": "Step 3/23 : LABEL VERSION=2020.09.17",
"8": " ---> Using cache",
"9": " ---> 236997fb048e",
"10": "Step 4/23 : LABEL CI_IGNORE=False",
"11": " ---> Using cache",
"12": " ---> a715d70fbe67",
"13": "Step 5/23 : ENV GOPATH /go",
"14": " ---> Using cache",
"15": " ---> eaea29cec37d",
"16": "Step 6/23 : ENV CGO_ENABLED 0",
"17": " ---> Using cache",
"18": " ---> ecace4e393c1",
"19": "Step 7/23 : ENV GO111MODULE on",
"20": " ---> Using cache",
"21": " ---> 4753c47068af",
"22": "Step 8/23 : RUN apk add --no-cache git && git clone https://github.com/minio/minio && cd minio && git checkout ed78854cead490ca6de6fe2e3255d000519a65e4",
"23": " ---> Running in 6e896f091aba",
"24": "fetch https://dl-cdn.alpinelinux.org/alpine/v3.13/main/x86_64/APKINDEX.tar.gz",
"25": "\u001b[91mWARNING: Ignoring https://dl-cdn.alpinelinux.org/alpine/v3.13/main: Permission denied",
"26": "\u001b[0mfetch https://dl-cdn.alpinelinux.org/alpine/v3.13/community/x86_64/APKINDEX.tar.gz",
"27": "\u001b[91mWARNING: Ignoring https://dl-cdn.alpinelinux.org/alpine/v3.13/community: Permission denied",
"28": "\u001b[0m\u001b[91mERROR: unable to select packages:",
"29": "\u001b[0m git (no such package):",
"30": " required by: world[git]",
"31": "",
"33": "ERROR: The command '/bin/sh -c apk add --no-cache git && git clone https://github.com/minio/minio && cd minio && git checkout ed78854cead490ca6de6fe2e3255d000519a65e4' returned a non-zero code: 1"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/services/store/minio/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/minio:2020.09.17",
"test_done": true,
"timestamp": "1611822728603"
}
Container: kaapana/dcm4chee-arc:5.22.4
36/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/dcm4chee-arc:5.22.4
############################ Build: 00:00:00.18 -> success
Container: kaapana/dcm4chee-ldap:2.4.50-22.4
37/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/dcm4chee-ldap:2.4.50-22.4
############################ Build: 00:00:00.14 -> success
Container: kaapana/dcm4che-postgres:9.6.17-22
38/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/dcm4che-postgres:9.6.17-22
############################ Build: 00:00:00.16 -> success
Container: kaapana/ohif:4.5.9
39/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/ohif:4.5.9
-----------------------------------------------------------
Log: kaapana/ohif:4.5.9
Step: Docker build
Message: Build failed!
-----------------------------------------------------------
SkipException: SKIP kaapana/ohif:4.5.9: build() failed!
{
"log": {
"0": "\u001b[0m\u001b[91mwarning \" > @ohif/extension-vtk@1.7.6\" has unmet peer dependency \"prop-types@^15.7.2\".",
"1": "\u001b[0m\u001b[91mwarning \" > @ohif/extension-vtk@1.7.6\" has unmet peer dependency \"react-i18next@^10.11.0\".",
"2": "warning \" > @ohif/extension-vtk@1.7.6\" has unmet peer dependency \"react-redux@^7.1.0\".",
"3": "\u001b[0m\u001b[91mwarning \" > @ohif/extension-vtk@1.7.6\" has unmet peer dependency \"react-resize-detector@^4.2.0\".",
"4": "\u001b[0m\u001b[91mwarning \" > @ohif/extension-vtk@1.7.6\" has unmet peer dependency \"redux@^4.0.1\".",
"5": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/i18n > react-i18next@10.13.2\" has incorrect peer dependency \"i18next@>= 17.0.0\".",
"6": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/ui > react-dates@21.2.1\" has incorrect peer dependency \"react-with-direction@^1.3.1\".",
"7": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/ui > react-transition-group@2.0.0\" has incorrect peer dependency \"react@^15.0.0\".",
"8": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/ui > react-transition-group@2.0.0\" has incorrect peer dependency \"react-dom@^15.0.0\".",
"9": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/viewer > vtk.js@11.14.0\" has unmet peer dependency \"wslink@^0.1.8\".",
"10": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-cornerstone > react-cornerstone-viewport@4.0.2\" has unmet peer dependency \"cornerstone-core@2.3.x\".",
"11": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-cornerstone > react-cornerstone-viewport@4.0.2\" has unmet peer dependency \"cornerstone-math@0.1.x\".",
"12": "warning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-cornerstone > react-cornerstone-viewport@4.0.2\" has unmet peer dependency \"cornerstone-tools@4.x.x\".",
"13": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-cornerstone > react-cornerstone-viewport@4.0.2\" has unmet peer dependency \"cornerstone-wado-image-loader@3.0.x\".",
"14": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-cornerstone > react-cornerstone-viewport@4.0.2\" has unmet peer dependency \"dicom-parser@^1.8.3\".",
"15": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-cornerstone > react-cornerstone-viewport@4.0.2\" has unmet peer dependency \"hammerjs@^2.0.8\".",
"16": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-vtk > react-vtkjs-viewport@0.10.4\" has unmet peer dependency \"vtk.js@^11.14.0\".",
"17": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/ui > docz-plugin-css > docz-core > react-docgen-typescript-loader@3.7.1\" has unmet peer dependency \"typescript@*\".",
"18": "\u001b[0m[5/5] Building fresh packages...",
"19": "info Visit https://yarnpkg.com/en/docs/cli/install for documentation about this command.",
"20": "\u001b[91merror /src/node_modules/node-sass: Command failed.",
"21": "Exit code: 1",
"22": "Command: node scripts/build.js",
"23": "Arguments: ",
"24": "Directory: /src/node_modules/node-sass",
"25": "Output:",
"26": "Building: /usr/local/bin/node /src/node_modules/node-gyp/bin/node-gyp.js rebuild --verbose --libsass_ext= --libsass_cflags= --libsass_ldflags= --libsass_library=",
"27": "gyp info it worked if it ends with ok",
"28": "gyp verb cli [",
"29": "gyp verb cli '/usr/local/bin/node',",
"30": "gyp verb cli '/src/node_modules/node-gyp/bin/node-gyp.js',",
"31": "gyp verb cli 'rebuild',",
"32": "gyp verb cli '--verbose',",
"33": "gyp verb cli '--libsass_ext=',",
"34": "gyp verb cli '--libsass_cflags=',",
"35": "gyp verb cli '--libsass_ldflags=',",
"36": "gyp verb cli '--libsass_library='",
"37": "gyp verb cli ]",
"38": "gyp info using node-gyp@3.8.0",
"39": "gyp info using node@14.15.3 | linux | x64",
"40": "gyp verb command rebuild []",
"41": "gyp verb command clean []",
"42": "gyp verb clean removing \"build\" directory",
"43": "gyp verb command configure []",
"44": "gyp verb check python checking for Python executable \"python2\" in the PATH",
"45": "gyp verb `which` failed Error: not found: python2",
"46": "gyp verb `which` failed at getNotFoundError (/src/node_modules/which/which.js:13:12)",
"47": "gyp verb `which` failed at F (/src/node_modules/which/which.js:68:19)",
"48": "gyp verb `which` failed at E (/src/node_modules/which/which.js:80:29)",
"49": "gyp verb `which` failed at /src/node_modules/which/which.js:89:16",
"50": "gyp verb `which` failed at /src/node_modules/isexe/index.js:42:5",
"51": "gyp verb `which` failed at /src/node_modules/isexe/mode.js:8:5",
"52": "gyp verb `which` failed at FSReqCallback.oncomplete (fs.js:183:21)",
"53": "gyp verb `which` failed python2 Error: not found: python2",
"54": "gyp verb `which` failed at getNotFoundError (/src/node_modules/which/which.js:13:12)",
"55": "gyp verb `which` failed at F (/src/node_modules/which/which.js:68:19)",
"56": "gyp verb `which` failed at E (/src/node_modules/which/which.js:80:29)",
"57": "gyp verb `which` failed at /src/node_modules/which/which.js:89:16",
"58": "gyp verb `which` failed at /src/node_modules/isexe/index.js:42:5",
"59": "gyp verb `which` failed at /src/node_modules/isexe/mode.js:8:5",
"60": "gyp verb `which` failed at FSReqCallback.oncomplete (fs.js:183:21) {",
"61": "gyp verb `which` failed code: 'ENOENT'",
"62": "gyp verb `which` failed }",
"63": "gyp verb check python checking for Python executable \"python\" in the PATH",
"64": "gyp verb `which` failed Error: not found: python",
"65": "gyp verb `which` failed at getNotFoundError (/src/node_modules/which/which.js:13:12)",
"66": "gyp verb `which` failed at F (/src/node_modules/which/which.js:68:19)",
"67": "gyp verb `which` failed at E (/src/node_modules/which/which.js:80:29)",
"68": "gyp verb `which` failed at /src/node_modules/which/which.js:89:16",
"69": "gyp verb `which` failed at /src/node_modules/isexe/index.js:42:5",
"70": "gyp verb `which` failed at /src/node_modules/isexe/mode.js:8:5",
"71": "gyp verb `which` failed at FSReqCallback.oncomplete (fs.js:183:21)",
"72": "gyp verb `which` failed python Error: not found: python",
"73": "gyp verb `which` failed at getNotFoundError (/src/node_modules/which/which.js:13:12)",
"74": "gyp verb `which` failed at F (/src/node_modules/which/which.js:68:19)",
"75": "gyp verb `which` failed at E (/src/node_modules/which/which.js:80:29)",
"76": "gyp verb `which` failed at /src/node_modules/which/which.js:89:16",
"77": "gyp verb `which` failed at /src/node_modules/isexe/index.js:42:5",
"78": "gyp verb `which` failed at /src/node_modules/isexe/mode.js:8:5",
"79": "gyp verb `which` failed at FSReqCallback.oncomplete (fs.js:183:21) {",
"80": "gyp verb `which` failed code: 'ENOENT'",
"81": "gyp verb `which` failed }",
"82": "gyp ERR! configure error ",
"83": "gyp ERR! stack Error: Can't find Python executable \"python\", you can set the PYTHON env variable.",
"84": "gyp ERR! stack at PythonFinder.failNoPython (/src/node_modules/node-gyp/lib/configure.js:484:19)",
"85": "gyp ERR! stack at PythonFinder.<anonymous> (/src/node_modules/node-gyp/lib/configure.js:406:16)",
"86": "gyp ERR! stack at F (/src/node_modules/which/which.js:68:16)",
"87": "gyp ERR! stack at E (/src/node_modules/which/which.js:80:29)",
"88": "gyp ERR! stack at /src/node_modules/which/which.js:89:16",
"89": "gyp ERR! stack at /src/node_modules/isexe/index.js:42:5",
"90": "gyp ERR! stack at /src/node_modules/isexe/mode.js:8:5",
"91": "gyp ERR! stack at FSReqCallback.oncomplete (fs.js:183:21)",
"92": "gyp ERR! System Linux 4.15.0-128-generic",
"93": "gyp ERR! command \"/usr/local/bin/node\" \"/src/node_modules/node-gyp/bin/node-gyp.js\" \"rebuild\" \"--verbose\" \"--libsass_ext=\" \"--libsass_cflags=\" \"--libsass_ldflags=\" \"--libsass_library=\"",
"94": "gyp ERR! cwd /src/node_modules/node-sass",
"95": "gyp ERR! node -v v14.15.3",
"96": "gyp ERR! node-gyp -v v3.8.0",
"97": "gyp ERR! not ok ",
"98": "Build failed with error code: 1",
"99": "\u001b[0m",
"101": "ERROR: The command '/bin/sh -c yarn install' returned a non-zero code: 1"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/services/store/ohif-viewer/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/ohif:4.5.9",
"test_done": true,
"timestamp": "1611822873099"
}
Container: kaapana/minio-init:0.1.1
40/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/minio-init:0.1.1
############################ Build: 00:00:00.14 -> success
Container: kaapana/kaapana-plugin:0.1.0
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############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/kaapana-plugin:0.1.0
############################ Build: 00:00:00.21 -> success
Container: kaapana/dag-nnunet-inference:0.1.0
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############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/dag-nnunet-inference:0.1.0
############################ Build: 00:00:00.21 -> success
Container: kaapana/dag-radiomics:0.1.0
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############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/dag-radiomics:0.1.0
############################ Build: 00:00:00.19 -> success
Container: kaapana/dag-shapemodel:0.1.0
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############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/dag-shapemodel:0.1.0
############################ Build: 00:00:00.19 -> success
Container: kaapana/mitk-radiomics:15.10.20-master
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############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/mitk-radiomics:15.10.20-master
############################ Build: 00:00:00.20 -> success
Container: kaapana/dicomwebsend:0.50.0
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############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/dicomwebsend:0.50.0
############################ Build: 00:00:00.18 -> success
Container: kaapana/dcmsend:3.6.2
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############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/dcmsend:3.6.2
############################ Build: 00:00:00.17 -> success
Container: kaapana/dcmqi:v1.2.2
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############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/dcmqi:v1.2.2
############################ Build: 00:00:00.21 -> success
Container: kaapana/nnunet-predict:0.1.0
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############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/nnunet-predict:0.1.0
############################ Build: 00:00:00.21 -> success
Container: kaapana/nnunet-get-models:0.1.0
50/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/nnunet-get-models:0.1.0
############################ Build: 00:00:00.16 -> success
Container: kaapana/mitk-fileconverter:01.10.2020-master
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############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/mitk-fileconverter:01.10.2020-master
############################ Build: 00:00:00.21 -> success
Container: kaapana/jip-documentation:0.1-alpha
52/82
SKIP kaapana/jip-documentation:0.1-alpha: CI_IGNORE == True!
Container: kaapana/mainzelliste:1.9-latest
53/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/mainzelliste:1.9-latest
############################ Build: 00:00:00.16 -> success
Container: kaapana/clara-train-sdk:3.0-vdev
54/82
SKIP kaapana/clara-train-sdk:3.0-vdev: CI_IGNORE == True!
Container: kaapana/webvowl:1.0-vdev
55/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/webvowl:1.0-vdev
############################ Build: 00:00:00.17 -> success
Container: kaapana/debug_container:1.0-vdev
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############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/debug_container:1.0-vdev
############################ Build: 00:00:00.18 -> success
Container: kaapana/apache-jena:0.1-vdev
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############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/apache-jena:0.1-vdev
############################ Build: 00:00:00.17 -> success
Container: kaapana/matchpoint:0.1-alpha
58/82
SKIP kaapana/matchpoint:0.1-alpha: CI_IGNORE == True!
Container: kaapana/rttoolbox:0.1-alpha
59/82
SKIP kaapana/rttoolbox:0.1-alpha: CI_IGNORE == True!
Container: kaapana/perfusion-mini-app:0.1-alpha
60/82
SKIP kaapana/perfusion-mini-app:0.1-alpha: CI_IGNORE == True!
Container: kaapana/jupyterhub:1.0-vdev
61/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/jupyterhub:1.0-vdev
############################ Build: 00:00:00.15 -> success
Container: kaapana/theia-ide:1.0-vdev
62/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/theia-ide:1.0-vdev
############################ Build: 00:00:00.20 -> success
Container: kaapana/image_handler:0.1-alpha
63/82
SKIP kaapana/image_handler:0.1-alpha: CI_IGNORE == True!
Container: kaapana/mysql:8.0
64/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/mysql:8.0
############################ Build: 00:00:00.17 -> success
Container: kaapana/pysyft-nb:1.0-vdev
65/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/pysyft-nb:1.0-vdev
############################ Build: 00:00:00.16 -> success
Container: jip/landing-page-jip:0.1.0
66/82
############################ Build Container: dktk-jip-registry.dkfz.de/jip/landing-page-jip:0.1.0
-----------------------------------------------------------
Log: jip/landing-page-jip:0.1.0
Step: Docker build
Message: Build failed!
-----------------------------------------------------------
SkipException: SKIP jip/landing-page-jip:0.1.0: build() failed!
{
"log": {
"0": "Sending build context to Docker daemon 389.6kB",
"1": "",
"2": "Step 1/12 : FROM local-only/base-landing-page:0.1.0 as build-stage",
"3": " ---> 9e51d665d05e",
"4": "Step 2/12 : LABEL IMAGE=\"landing-page-jip\"",
"5": " ---> Using cache",
"6": " ---> dac4a7e53163",
"7": "Step 3/12 : LABEL REGISTRY_PROJECT=\"jip\"",
"8": " ---> Using cache",
"9": " ---> 85ca99ffad18",
"10": "Step 4/12 : LABEL VERSION=\"0.1.0\"",
"11": " ---> Using cache",
"12": " ---> a83dfdad9736",
"13": "Step 5/12 : LABEL CI_IGNORE=\"False\"",
"14": " ---> Using cache",
"15": " ---> e273f3df336c",
"16": "Step 6/12 : COPY files/kaapana_app/src/assets/ src/assets/",
"17": " ---> Using cache",
"18": " ---> c9aada78410d",
"19": "Step 7/12 : COPY files/kaapana_app/src/components/WelcomeViews/KaapanaWelcome.vue src/components/WelcomeViews/KaapanaWelcome.vue",
"20": " ---> Using cache",
"21": " ---> 06cef34a74c9",
"22": "Step 8/12 : RUN npm run build",
"23": " ---> Running in e66d808b6264",
"24": "\u001b[91m/bin/sh: npm: not found",
"25": "\u001b[0m",
"27": "ERROR: The command '/bin/sh -c npm run build' returned a non-zero code: 127"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/services/base/landing-page-jip/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "jip/landing-page-jip:0.1.0",
"test_done": true,
"timestamp": "1611822878000"
}
Container: tfda/landing-page-tfda:0.1.0-vdev
67/82
############################ Build Container: dktk-jip-registry.dkfz.de/tfda/landing-page-tfda:0.1.0-vdev
-----------------------------------------------------------
Log: tfda/landing-page-tfda:0.1.0-vdev
Step: Docker build
Message: Build failed!
-----------------------------------------------------------
SkipException: SKIP tfda/landing-page-tfda:0.1.0-vdev: build() failed!
{
"log": {
"0": "Sending build context to Docker daemon 1.76MB",
"1": "",
"2": "Step 1/15 : FROM local-only/base-landing-page:0.1.0 as build-stage",
"3": " ---> 9e51d665d05e",
"4": "Step 2/15 : LABEL IMAGE=\"landing-page-tfda\"",
"5": " ---> Using cache",
"6": " ---> b08e2c052939",
"7": "Step 3/15 : LABEL REGISTRY_PROJECT=\"tfda\"",
"8": " ---> Using cache",
"9": " ---> 71912960b115",
"10": "Step 4/15 : LABEL VERSION=\"0.1.0-vdev\"",
"11": " ---> Using cache",
"12": " ---> e71425898052",
"13": "Step 5/15 : LABEL CI_IGNORE=\"False\"",
"14": " ---> Using cache",
"15": " ---> 0ff43a92c723",
"16": "Step 6/15 : COPY files/kaapana_app/src/assets/ src/assets/",
"17": " ---> Using cache",
"18": " ---> 29eebc21be29",
"19": "Step 7/15 : COPY files/kaapana_app/src/components/ src/components/",
"20": " ---> Using cache",
"21": " ---> 40da709a22af",
"22": "Step 8/15 : COPY files/kaapana_app/src/routes/ src/routes/",
"23": " ---> Using cache",
"24": " ---> 2d17c6cb67b2",
"25": "Step 9/15 : COPY files/kaapana_app/src/views src/views",
"26": " ---> Using cache",
"27": " ---> 2827a449c11f",
"28": "Step 10/15 : COPY files/kaapana_app/src/App.vue src/App.vue",
"29": " ---> Using cache",
"30": " ---> 68c444c76395",
"31": "Step 11/15 : RUN npm run build",
"32": " ---> Running in a55e02642ef7",
"33": "\u001b[91m/bin/sh: npm: not found",
"34": "\u001b[0m",
"36": "ERROR: The command '/bin/sh -c npm run build' returned a non-zero code: 127"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/services/base/landing-page-tfda/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "tfda/landing-page-tfda:0.1.0-vdev",
"test_done": true,
"timestamp": "1611822879307"
}
Container: kaapana/mitk-flow:0.1.0
68/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/mitk-flow:0.1.0
############################ Build: 00:00:00.22 -> success
Container: kaapana/kibana-jip:6.8.12
69/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/kibana-jip:6.8.12
############################ Build: 00:00:00.18 -> success
Container: kaapana/workflow_fileserver:1.0
70/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/workflow_fileserver:1.0
############################ Build: 00:00:00.17 -> success
Container: kaapana/doccano-backend:1.0-vdev
71/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/doccano-backend:1.0-vdev
-----------------------------------------------------------
Log: kaapana/doccano-backend:1.0-vdev
Step: Docker build
Message: Build failed!
-----------------------------------------------------------
SkipException: SKIP kaapana/doccano-backend:1.0-vdev: build() failed!
{
"log": {
"0": "Step 1/17 : FROM python:3.6",
"1": " ---> 6b0219e0ed75",
"2": "Step 2/17 : LABEL MAINTAINER=\"Klaus Kades,k.kades@dkfz-heidelberg.de\"",
"3": " ---> Using cache",
"4": " ---> 2f174d20a704",
"5": "Step 3/17 : LABEL DOCKER_REGISTRY=\"dktk-jip-registry.dkfz.de\"",
"6": " ---> Using cache",
"7": " ---> 6f6002d37b53",
"8": "Step 4/17 : LABEL DOCKER_REPO=\"kaapna-core\"",
"9": " ---> Using cache",
"10": " ---> c23269746e1a",
"11": "Step 5/17 : LABEL IMAGE=\"doccano-backend\"",
"12": " ---> Using cache",
"13": " ---> 6ecef864ca30",
"14": "Step 6/17 : LABEL VERSION=\"1.0-vdev\"",
"15": " ---> Using cache",
"16": " ---> f22822e9461b",
"17": "Step 7/17 : WORKDIR /app",
"18": " ---> Using cache",
"19": " ---> 5a1c5d83a5eb",
"20": "Step 8/17 : ENV PYTHONDONTWRITEBYTECODE 1",
"21": " ---> Using cache",
"22": " ---> a8fe2ceda057",
"23": "Step 9/17 : ENV PYTHONUNBUFFERED 1",
"24": " ---> Using cache",
"25": " ---> cadc47e85f56",
"26": "Step 10/17 : RUN apt-get update && apt-get install --no-install-recommends -y python3-dev libpq-dev unixodbc-dev",
"27": " ---> Using cache",
"28": " ---> 4daf6694dc36",
"29": "Step 11/17 : RUN pip install PyJWT==1.7.1 cryptography==2.8",
"30": " ---> Using cache",
"31": " ---> e7d05101f8d0",
"32": "Step 12/17 : RUN git clone https://github.com/doccano/doccano.git doccano && cd doccano && git checkout 16804ef3b993f220fa1b2a3a9650885c5474313b",
"33": " ---> Using cache",
"34": " ---> 3e1fa18220b0",
"35": "Step 13/17 : WORKDIR /app/doccano/app",
"36": " ---> Using cache",
"37": " ---> 79e3cd60df49",
"38": "Step 14/17 : RUN pip install --no-cache-dir -r requirements.txt",
"39": " ---> Running in 321b2a944f31",
"40": "Collecting apache-libcloud==2.4.0",
"41": " Downloading apache_libcloud-2.4.0-py2.py3-none-any.whl (2.9 MB)",
"42": "Collecting applicationinsights==0.11.7",
"43": " Downloading applicationinsights-0.11.7-py2.py3-none-any.whl (56 kB)",
"44": "Collecting chardet==3.0.4",
"45": " Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB)",
"46": "Collecting colour==0.1.5",
"47": " Downloading colour-0.1.5-py2.py3-none-any.whl (23 kB)",
"48": "Collecting conllu==1.3.2",
"49": " Downloading conllu-1.3.2-py2.py3-none-any.whl (9.3 kB)",
"50": "Collecting coverage==4.5.3",
"51": " Downloading coverage-4.5.3-cp36-cp36m-manylinux1_x86_64.whl (205 kB)",
"52": "Collecting dj-database-url==0.5.0",
"53": " Downloading dj_database_url-0.5.0-py2.py3-none-any.whl (5.5 kB)",
"54": "Collecting Django==2.2.10",
"55": " Downloading Django-2.2.10-py3-none-any.whl (7.5 MB)",
"56": "Collecting django-cloud-browser==0.5.0",
"57": " Downloading django-cloud-browser-0.5.0.tar.gz (52 kB)",
"58": "Collecting django-cors-headers==3.1.1",
"59": " Downloading django_cors_headers-3.1.1-py3-none-any.whl (14 kB)",
"60": "Collecting django-filter==2.0.0",
"61": " Downloading django_filter-2.0.0-py3-none-any.whl (69 kB)",
"62": "Collecting django-heroku==0.3.1",
"63": " Downloading django_heroku-0.3.1-py2.py3-none-any.whl (6.2 kB)",
"64": "Collecting django-polymorphic==2.0.3",
"65": " Downloading django_polymorphic-2.0.3-py2.py3-none-any.whl (74 kB)",
"66": "Collecting django-pyodbc-azure==2.1.0.0",
"67": " Downloading django_pyodbc_azure-2.1.0.0-py3-none-any.whl (39 kB)",
"68": "INFO: pip is looking at multiple versions of django-polymorphic to determine which version is compatible with other requirements. This could take a while.",
"69": "INFO: pip is looking at multiple versions of django-heroku to determine which version is compatible with other requirements. This could take a while.",
"70": "INFO: pip is looking at multiple versions of django-filter to determine which version is compatible with other requirements. This could take a while.",
"71": "INFO: pip is looking at multiple versions of django-cors-headers to determine which version is compatible with other requirements. This could take a while.",
"72": "INFO: pip is looking at multiple versions of django-cloud-browser to determine which version is compatible with other requirements. This could take a while.",
"73": "INFO: pip is looking at multiple versions of django to determine which version is compatible with other requirements. This could take a while.",
"74": "INFO: pip is looking at multiple versions of dj-database-url to determine which version is compatible with other requirements. This could take a while.",
"75": "INFO: pip is looking at multiple versions of coverage to determine which version is compatible with other requirements. This could take a while.",
"76": "INFO: pip is looking at multiple versions of conllu to determine which version is compatible with other requirements. This could take a while.",
"77": "INFO: pip is looking at multiple versions of colour to determine which version is compatible with other requirements. This could take a while.",
"78": "INFO: pip is looking at multiple versions of chardet to determine which version is compatible with other requirements. This could take a while.",
"79": "INFO: pip is looking at multiple versions of applicationinsights to determine which version is compatible with other requirements. This could take a while.",
"80": "INFO: pip is looking at multiple versions of <Python from Requires-Python> to determine which version is compatible with other requirements. This could take a while.",
"81": "INFO: pip is looking at multiple versions of apache-libcloud to determine which version is compatible with other requirements. This could take a while.",
"82": "\u001b[91mERROR: Cannot install -r requirements.txt (line 10), -r requirements.txt (line 11), -r requirements.txt (line 14), -r requirements.txt (line 15), -r requirements.txt (line 9) and Django==2.2.10 because these package versions have conflicting dependencies.",
"83": "\u001b[0m",
"84": "The conflict is caused by:",
"85": " The user requested Django==2.2.10",
"86": " django-cors-headers 3.1.1 depends on Django>=1.11",
"87": " django-filter 2.0.0 depends on Django>=1.11",
"88": " django-heroku 0.3.1 depends on django",
"89": " django-polymorphic 2.0.3 depends on Django>=1.11",
"90": " django-pyodbc-azure 2.1.0.0 depends on Django<2.2 and >=2.1.0",
"91": "",
"92": "To fix this you could try to:",
"93": "1. loosen the range of package versions you've specified",
"94": "2. remove package versions to allow pip attempt to solve the dependency conflict",
"95": "",
"96": "\u001b[91mERROR: ResolutionImpossible: for help visit https://pip.pypa.io/en/latest/user_guide/#fixing-conflicting-dependencies",
"97": "\u001b[0m\u001b[91mWARNING: You are using pip version 20.3.3; however, version 21.0 is available.",
"98": "You should consider upgrading via the '/usr/local/bin/python -m pip install --upgrade pip' command.",
"99": "\u001b[0m",
"101": "ERROR: The command '/bin/sh -c pip install --no-cache-dir -r requirements.txt' returned a non-zero code: 1"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/services/store/doccano/docker/doccano-backend/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/doccano-backend:1.0-vdev",
"test_done": true,
"timestamp": "1611822892263"
}
Container: kaapana/doccano-frontend:1.0-vdev
72/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/doccano-frontend:1.0-vdev
############################ Build: 00:00:00.21 -> success
Container: processing-external/monai-example:1.0-vdev
73/82
SKIP processing-external/monai-example:1.0-vdev: CI_IGNORE == True!
Container: kaapana/clara-inference:1.0-vdev
74/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/clara-inference:1.0-vdev
############################ Build: 00:00:00.15 -> success
Container: kaapana/python-template:0.1.0
75/82
SKIP kaapana/python-template:0.1.0: CI_IGNORE == True!
Container: processing-internal/transformers-text-classification:1.0-vdev
76/82
SKIP processing-internal/transformers-text-classification:1.0-vdev: CI_IGNORE == True!
Container: processing-internal/dag-liver-mri-segmentation:0.9-vdev
77/82
############################ Build Container: dktk-jip-registry.dkfz.de/processing-internal/dag-liver-mri-segmentation:0.9-vdev
############################ Build: 00:00:00.16 -> success
Container: kaapana/dag-mitk-flow:0.1.0
78/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/dag-mitk-flow:0.1.0
############################ Build: 00:00:00.16 -> success
Container: kaapana/dag-tfda-rf-diabetes:0.1.1-vdev
79/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/dag-tfda-rf-diabetes:0.1.1-vdev
-----------------------------------------------------------
Log: kaapana/dag-tfda-rf-diabetes:0.1.1-vdev
Step: Docker build
Message: Build failed!
-----------------------------------------------------------
SkipException: SKIP kaapana/dag-tfda-rf-diabetes:0.1.1-vdev: build() failed!
{
"log": {
"0": "Sending build context to Docker daemon 6.144kB",
"1": "",
"2": "Step 1/6 : FROM local-only/dag-installer:0.1.0",
"3": " ---> 07759e5688d7",
"4": "Step 2/6 : LABEL IMAGE=\"dag-tfda-rf-diabetes\"",
"5": " ---> Using cache",
"6": " ---> 878c6bc300ef",
"7": "Step 3/6 : LABEL VERSION=\"0.1.1-vdev\"",
"8": " ---> Using cache",
"9": " ---> 15a5ade5d209",
"10": "Step 4/6 : LABEL CI_IGNORE=\"False\"",
"11": " ---> Using cache",
"12": " ---> 0488f0703f64",
"13": "Step 5/6 : COPY dags/dag_tfda_diabetes_prediction.py /tmp/dags/",
"14": "",
"16": "ERROR: COPY failed: stat /var/lib/docker/tmp/docker-builder284829289/dags/dag_tfda_diabetes_prediction.py: no such file or directory"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/workflows/dag-installer/tfda-diabetes-prediction/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/dag-tfda-rf-diabetes:0.1.1-vdev",
"test_done": true,
"timestamp": "1611822893090"
}
Container: kaapana/dicom-init:0.1.0
80/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/dicom-init:0.1.0
-----------------------------------------------------------
Log: kaapana/dicom-init:0.1.0
Step: Docker build
Message: Build failed!
-----------------------------------------------------------
SkipException: SKIP kaapana/dicom-init:0.1.0: build() failed!
{
"log": {
"0": "Sending build context to Docker daemon 20.99kB",
"1": "",
"2": "Step 1/13 : FROM dktk-jip-registry.dkfz.de/kaapana-public/dicom_phantom:1.0 as files",
"3": "",
"5": "ERROR: unknown: repository kaapana-public/dicom_phantom not found"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/services/store/store-init/dicom-init/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/dicom-init:0.1.0",
"test_done": true,
"timestamp": "1611822893460"
}
Container: kaapana/shape-organseg:0.1.1
81/82
############################ Build Container: dktk-jip-registry.dkfz.de/kaapana/shape-organseg:0.1.1
-----------------------------------------------------------
Log: kaapana/shape-organseg:0.1.1
Step: Docker build
Message: Build failed!
-----------------------------------------------------------
SkipException: SKIP kaapana/shape-organseg:0.1.1: build() failed!
{
"log": {
"0": "Sending build context to Docker daemon 12.29kB",
"1": "",
"2": "Step 1/8 : FROM dktk-jip-registry.dkfz.de/kaapana-public/multiorgansegmentation:v0.9",
"3": "",
"5": "ERROR: unknown: repository kaapana-public/multiorgansegmentation not found"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/workflows/processing-container/organ_segmentation_multi_ct_shapemodel/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/shape-organseg:0.1.1",
"test_done": true,
"timestamp": "1611822893854"
}
Container: processing-internal/organseg-liver-mri:0.9-vdev
82/82
############################ Build Container: dktk-jip-registry.dkfz.de/processing-internal/organseg-liver-mri:0.9-vdev
############################ Build: 00:00:00.15 -> success
-----------------------------------------------------------
-----------------------------------------------------------
------------------- Container issues: ---------------------
-----------------------------------------------------------
{
"log": "",
"loglevel": "WARN",
"message": "Could not resolve base image: ['dktk-jip-registry.dkfz.de/kaapana-public/multiorgansegmentation:v0.9']",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/workflows/processing-container/organ_segmentation_multi_ct_shapemodel/Dockerfile",
"step": "Base-Image Check",
"suite": "Docker Container",
"test": "kaapana/shape-organseg:0.1.1",
"timestamp": "1611821455215"
}
-----------------------------------------------------------
{
"log": "",
"loglevel": "WARN",
"message": "Could not resolve base image: ['dktk-jip-registry.dkfz.de/processing-internal/liver-organseg-raw:1.0.0']",
"rel_file": "/home/ubuntu/kaapana-internal/workflows/docker-container/organ_segmentation_liver_mri_shapemodel/Dockerfile",
"step": "Base-Image Check",
"suite": "Docker Container",
"test": "processing-internal/organseg-liver-mri:0.9-vdev",
"timestamp": "1611821455215"
}
-----------------------------------------------------------
{
"log": {
"0": "Sending build context to Docker daemon 1.612MB",
"1": "",
"2": "Step 1/11 : FROM python:3.9-alpine3.12 as build-stage",
"3": " ---> d4d4f50f871a",
"4": "Step 2/11 : LABEL IMAGE=\"kaapana-documentation\"",
"5": " ---> Using cache",
"6": " ---> b28533ed4b96",
"7": "Step 3/11 : LABEL VERSION=\"0.1-alpha\"",
"8": " ---> Using cache",
"9": " ---> fbc4f77aac99",
"10": "Step 4/11 : LABEL CI_IGNORE=\"False\"",
"11": " ---> Using cache",
"12": " ---> 21f357ed6ac1",
"13": "Step 5/11 : COPY ./ /src",
"14": " ---> Using cache",
"15": " ---> ae74b921c038",
"16": "Step 6/11 : WORKDIR /src",
"17": " ---> Using cache",
"18": " ---> 061ccbc2a9de",
"19": "Step 7/11 : RUN apk add --update alpine-sdk zlib-dev jpeg-dev freetype-dev lcms2-dev openjpeg-dev tiff-dev tk-dev tcl-dev",
"20": " ---> Using cache",
"21": " ---> f5aaf2dc1360",
"22": "Step 8/11 : RUN python3 -m pip install -r requirements.txt",
"23": " ---> Using cache",
"24": " ---> 9102ce36b1d0",
"25": "Step 9/11 : RUN make html",
"26": " ---> Running in bb99df3b69c3",
"27": "Running Sphinx v3.2.1",
"28": "\u001b[91m",
"29": "Extension error:",
"30": "Could not import extension sphinxcontrib.mermaid (exception: No module named 'six')",
"31": "\u001b[0m\u001b[91mmake: *** [Makefile:19: html] Error 2",
"32": "\u001b[0m",
"34": "ERROR: The command '/bin/sh -c make html' returned a non-zero code: 2"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/docs/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/kaapana-documentation:0.1-alpha",
"test_done": true,
"timestamp": "1611821458344"
}
-----------------------------------------------------------
{
"log": {
"0": "Sending build context to Docker daemon 9.216kB",
"1": "",
"2": "Step 1/28 : FROM local-only/mitk-base:0.1.0 as build_container",
"3": " ---> 07c4b5757aa4",
"4": "Step 2/28 : LABEL IMAGE=\"mitk-volume\"",
"5": " ---> Using cache",
"6": " ---> e590659e32e2",
"7": "Step 3/28 : LABEL VERSION=\"0.1.0\"",
"8": " ---> Using cache",
"9": " ---> f1b1db5fa90e",
"10": "Step 4/28 : LABEL CI_IGNORE=\"False\"",
"11": " ---> Using cache",
"12": " ---> 0ce72386891b",
"13": "Step 5/28 : RUN mkdir /opt/mitk-bin",
"14": " ---> Using cache",
"15": " ---> 1d61c57f96a5",
"16": "Step 6/28 : RUN mkdir /opt/bin",
"17": " ---> Using cache",
"18": " ---> dfa4eb05b3e1",
"19": "Step 7/28 : ENV MITK_BRANCH=master",
"20": " ---> Using cache",
"21": " ---> a465e0de445a",
"22": "Step 8/28 : ENV MITK_REV=0f33cec9e310c3f69b6c46795f29c026f7e90dc6",
"23": " ---> Using cache",
"24": " ---> 7e45b4677cab",
"25": "Step 9/28 : RUN git clone --single-branch --branch ${MITK_BRANCH} https://phabricator.mitk.org/source/mitk.git MITK && cd MITK && git checkout ${MITK_REV}",
"26": " ---> Using cache",
"27": " ---> c8cbdf0d40b5",
"28": "Step 10/28 : RUN cmake -G Ninja -S MITK -B MITK-superbuild",
"29": " ---> Using cache",
"30": " ---> 8c0da7290a4d",
"31": "Step 11/28 : RUN cmake -S MITK -B MITK-superbuild -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_TESTING:BOOL=OFF -D MITK_CUSTOM_REVISION_DESC:STRING=MitkVolume",
"32": " ---> Using cache",
"33": " ---> a97be1ed2557",
"34": "Step 12/28 : RUN git config --global url.https://github.com/.insteadOf git://github.com/",
"35": " ---> Using cache",
"36": " ---> 3ef71599a00a",
"37": "Step 13/28 : RUN cmake --build MITK-superbuild",
"38": " ---> Using cache",
"39": " ---> 1117f9e8c7b2",
"40": "Step 14/28 : RUN cmake --build MITK-superbuild/MITK-build --target package",
"41": " ---> Using cache",
"42": " ---> 14239007efcf",
"43": "Step 15/28 : RUN mkdir /opt/final_package",
"44": " ---> Using cache",
"45": " ---> c7f4e60721bc",
"46": "Step 16/28 : RUN cp /opt/MITK-superbuild/MITK-build/MITK-MitkVolume-linux-x86_64.tar.gz /opt/final_package/MITK-MitkVolume-linux-x86_64.tar.gz",
"47": " ---> Using cache",
"48": " ---> 334eb9908cde",
"49": "Step 17/28 : FROM local-only/no-vnc-base:0.1.0",
"50": " ---> 1375bc10a7cf",
"51": "Step 18/28 : RUN mkdir -p /tmp_src /mitk",
"52": " ---> Using cache",
"53": " ---> e8d9c9f54d94",
"54": "Step 19/28 : WORKDIR /tmp_src",
"55": " ---> Using cache",
"56": " ---> e492b938597b",
"57": "Step 20/28 : COPY --from=build_container /opt/final_package/MITK-MitkVolume-linux-x86_64.tar.gz ./mitk.tar.gz",
"58": " ---> Using cache",
"59": " ---> 257e2b02b0b2",
"60": "Step 21/28 : RUN tar -xzf mitk.tar.gz -C ./ && mv ./MITK-MitkVolume-linux-x86_64/* /mitk && rm -rf /tmp_src",
"61": " ---> Using cache",
"62": " ---> a7eac996b3df",
"63": "Step 22/28 : COPY files/startMITK.sh /root/Desktop/",
"64": " ---> Using cache",
"65": " ---> 2bc6bfd1547d",
"66": "Step 23/28 : RUN chmod 0777 /root/Desktop/startMITK.sh",
"67": " ---> Using cache",
"68": " ---> ea72384e8f63",
"69": "Step 24/28 : RUN ln -s /data /root/Desktop/",
"70": " ---> Using cache",
"71": " ---> 0f91191ff882",
"72": "Step 25/28 : WORKDIR /data",
"73": " ---> Using cache",
"74": " ---> 4c64e70d5659",
"75": "Step 26/28 : RUN mkdir /root/Desktop/test-data",
"76": " ---> Using cache",
"77": " ---> 6c631eb1d242",
"78": "Step 27/28 : COPY files/Pic3D.nrrd /root/Desktop/test-data",
"79": "",
"81": "ERROR: COPY failed: stat /var/lib/docker/tmp/docker-builder405572582/files/Pic3D.nrrd: no such file or directory"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/services/applications/mitk-volume/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/mitk-volume:0.1.0",
"test_done": true,
"timestamp": "1611821460114"
}
-----------------------------------------------------------
{
"log": {
"0": "Sending build context to Docker daemon 86.53kB",
"1": "",
"2": "Step 1/23 : FROM golang:1.14-alpine as builder",
"3": " ---> 424d62f19476",
"4": "Step 2/23 : LABEL IMAGE=minio",
"5": " ---> Using cache",
"6": " ---> b36a0bdbd248",
"7": "Step 3/23 : LABEL VERSION=2020.09.17",
"8": " ---> Using cache",
"9": " ---> 236997fb048e",
"10": "Step 4/23 : LABEL CI_IGNORE=False",
"11": " ---> Using cache",
"12": " ---> a715d70fbe67",
"13": "Step 5/23 : ENV GOPATH /go",
"14": " ---> Using cache",
"15": " ---> eaea29cec37d",
"16": "Step 6/23 : ENV CGO_ENABLED 0",
"17": " ---> Using cache",
"18": " ---> ecace4e393c1",
"19": "Step 7/23 : ENV GO111MODULE on",
"20": " ---> Using cache",
"21": " ---> 4753c47068af",
"22": "Step 8/23 : RUN apk add --no-cache git && git clone https://github.com/minio/minio && cd minio && git checkout ed78854cead490ca6de6fe2e3255d000519a65e4",
"23": " ---> Running in 6e896f091aba",
"24": "fetch https://dl-cdn.alpinelinux.org/alpine/v3.13/main/x86_64/APKINDEX.tar.gz",
"25": "\u001b[91mWARNING: Ignoring https://dl-cdn.alpinelinux.org/alpine/v3.13/main: Permission denied",
"26": "\u001b[0mfetch https://dl-cdn.alpinelinux.org/alpine/v3.13/community/x86_64/APKINDEX.tar.gz",
"27": "\u001b[91mWARNING: Ignoring https://dl-cdn.alpinelinux.org/alpine/v3.13/community: Permission denied",
"28": "\u001b[0m\u001b[91mERROR: unable to select packages:",
"29": "\u001b[0m git (no such package):",
"30": " required by: world[git]",
"31": "",
"33": "ERROR: The command '/bin/sh -c apk add --no-cache git && git clone https://github.com/minio/minio && cd minio && git checkout ed78854cead490ca6de6fe2e3255d000519a65e4' returned a non-zero code: 1"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/services/store/minio/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/minio:2020.09.17",
"test_done": true,
"timestamp": "1611822728603"
}
-----------------------------------------------------------
{
"log": {
"0": "\u001b[0m\u001b[91mwarning \" > @ohif/extension-vtk@1.7.6\" has unmet peer dependency \"prop-types@^15.7.2\".",
"1": "\u001b[0m\u001b[91mwarning \" > @ohif/extension-vtk@1.7.6\" has unmet peer dependency \"react-i18next@^10.11.0\".",
"2": "warning \" > @ohif/extension-vtk@1.7.6\" has unmet peer dependency \"react-redux@^7.1.0\".",
"3": "\u001b[0m\u001b[91mwarning \" > @ohif/extension-vtk@1.7.6\" has unmet peer dependency \"react-resize-detector@^4.2.0\".",
"4": "\u001b[0m\u001b[91mwarning \" > @ohif/extension-vtk@1.7.6\" has unmet peer dependency \"redux@^4.0.1\".",
"5": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/i18n > react-i18next@10.13.2\" has incorrect peer dependency \"i18next@>= 17.0.0\".",
"6": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/ui > react-dates@21.2.1\" has incorrect peer dependency \"react-with-direction@^1.3.1\".",
"7": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/ui > react-transition-group@2.0.0\" has incorrect peer dependency \"react@^15.0.0\".",
"8": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/ui > react-transition-group@2.0.0\" has incorrect peer dependency \"react-dom@^15.0.0\".",
"9": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/viewer > vtk.js@11.14.0\" has unmet peer dependency \"wslink@^0.1.8\".",
"10": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-cornerstone > react-cornerstone-viewport@4.0.2\" has unmet peer dependency \"cornerstone-core@2.3.x\".",
"11": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-cornerstone > react-cornerstone-viewport@4.0.2\" has unmet peer dependency \"cornerstone-math@0.1.x\".",
"12": "warning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-cornerstone > react-cornerstone-viewport@4.0.2\" has unmet peer dependency \"cornerstone-tools@4.x.x\".",
"13": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-cornerstone > react-cornerstone-viewport@4.0.2\" has unmet peer dependency \"cornerstone-wado-image-loader@3.0.x\".",
"14": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-cornerstone > react-cornerstone-viewport@4.0.2\" has unmet peer dependency \"dicom-parser@^1.8.3\".",
"15": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-cornerstone > react-cornerstone-viewport@4.0.2\" has unmet peer dependency \"hammerjs@^2.0.8\".",
"16": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/extension-vtk > react-vtkjs-viewport@0.10.4\" has unmet peer dependency \"vtk.js@^11.14.0\".",
"17": "\u001b[0m\u001b[91mwarning \"workspace-aggregator-408923ad-58d8-4d87-a466-50c9d7cd3537 > @ohif/ui > docz-plugin-css > docz-core > react-docgen-typescript-loader@3.7.1\" has unmet peer dependency \"typescript@*\".",
"18": "\u001b[0m[5/5] Building fresh packages...",
"19": "info Visit https://yarnpkg.com/en/docs/cli/install for documentation about this command.",
"20": "\u001b[91merror /src/node_modules/node-sass: Command failed.",
"21": "Exit code: 1",
"22": "Command: node scripts/build.js",
"23": "Arguments: ",
"24": "Directory: /src/node_modules/node-sass",
"25": "Output:",
"26": "Building: /usr/local/bin/node /src/node_modules/node-gyp/bin/node-gyp.js rebuild --verbose --libsass_ext= --libsass_cflags= --libsass_ldflags= --libsass_library=",
"27": "gyp info it worked if it ends with ok",
"28": "gyp verb cli [",
"29": "gyp verb cli '/usr/local/bin/node',",
"30": "gyp verb cli '/src/node_modules/node-gyp/bin/node-gyp.js',",
"31": "gyp verb cli 'rebuild',",
"32": "gyp verb cli '--verbose',",
"33": "gyp verb cli '--libsass_ext=',",
"34": "gyp verb cli '--libsass_cflags=',",
"35": "gyp verb cli '--libsass_ldflags=',",
"36": "gyp verb cli '--libsass_library='",
"37": "gyp verb cli ]",
"38": "gyp info using node-gyp@3.8.0",
"39": "gyp info using node@14.15.3 | linux | x64",
"40": "gyp verb command rebuild []",
"41": "gyp verb command clean []",
"42": "gyp verb clean removing \"build\" directory",
"43": "gyp verb command configure []",
"44": "gyp verb check python checking for Python executable \"python2\" in the PATH",
"45": "gyp verb `which` failed Error: not found: python2",
"46": "gyp verb `which` failed at getNotFoundError (/src/node_modules/which/which.js:13:12)",
"47": "gyp verb `which` failed at F (/src/node_modules/which/which.js:68:19)",
"48": "gyp verb `which` failed at E (/src/node_modules/which/which.js:80:29)",
"49": "gyp verb `which` failed at /src/node_modules/which/which.js:89:16",
"50": "gyp verb `which` failed at /src/node_modules/isexe/index.js:42:5",
"51": "gyp verb `which` failed at /src/node_modules/isexe/mode.js:8:5",
"52": "gyp verb `which` failed at FSReqCallback.oncomplete (fs.js:183:21)",
"53": "gyp verb `which` failed python2 Error: not found: python2",
"54": "gyp verb `which` failed at getNotFoundError (/src/node_modules/which/which.js:13:12)",
"55": "gyp verb `which` failed at F (/src/node_modules/which/which.js:68:19)",
"56": "gyp verb `which` failed at E (/src/node_modules/which/which.js:80:29)",
"57": "gyp verb `which` failed at /src/node_modules/which/which.js:89:16",
"58": "gyp verb `which` failed at /src/node_modules/isexe/index.js:42:5",
"59": "gyp verb `which` failed at /src/node_modules/isexe/mode.js:8:5",
"60": "gyp verb `which` failed at FSReqCallback.oncomplete (fs.js:183:21) {",
"61": "gyp verb `which` failed code: 'ENOENT'",
"62": "gyp verb `which` failed }",
"63": "gyp verb check python checking for Python executable \"python\" in the PATH",
"64": "gyp verb `which` failed Error: not found: python",
"65": "gyp verb `which` failed at getNotFoundError (/src/node_modules/which/which.js:13:12)",
"66": "gyp verb `which` failed at F (/src/node_modules/which/which.js:68:19)",
"67": "gyp verb `which` failed at E (/src/node_modules/which/which.js:80:29)",
"68": "gyp verb `which` failed at /src/node_modules/which/which.js:89:16",
"69": "gyp verb `which` failed at /src/node_modules/isexe/index.js:42:5",
"70": "gyp verb `which` failed at /src/node_modules/isexe/mode.js:8:5",
"71": "gyp verb `which` failed at FSReqCallback.oncomplete (fs.js:183:21)",
"72": "gyp verb `which` failed python Error: not found: python",
"73": "gyp verb `which` failed at getNotFoundError (/src/node_modules/which/which.js:13:12)",
"74": "gyp verb `which` failed at F (/src/node_modules/which/which.js:68:19)",
"75": "gyp verb `which` failed at E (/src/node_modules/which/which.js:80:29)",
"76": "gyp verb `which` failed at /src/node_modules/which/which.js:89:16",
"77": "gyp verb `which` failed at /src/node_modules/isexe/index.js:42:5",
"78": "gyp verb `which` failed at /src/node_modules/isexe/mode.js:8:5",
"79": "gyp verb `which` failed at FSReqCallback.oncomplete (fs.js:183:21) {",
"80": "gyp verb `which` failed code: 'ENOENT'",
"81": "gyp verb `which` failed }",
"82": "gyp ERR! configure error ",
"83": "gyp ERR! stack Error: Can't find Python executable \"python\", you can set the PYTHON env variable.",
"84": "gyp ERR! stack at PythonFinder.failNoPython (/src/node_modules/node-gyp/lib/configure.js:484:19)",
"85": "gyp ERR! stack at PythonFinder.<anonymous> (/src/node_modules/node-gyp/lib/configure.js:406:16)",
"86": "gyp ERR! stack at F (/src/node_modules/which/which.js:68:16)",
"87": "gyp ERR! stack at E (/src/node_modules/which/which.js:80:29)",
"88": "gyp ERR! stack at /src/node_modules/which/which.js:89:16",
"89": "gyp ERR! stack at /src/node_modules/isexe/index.js:42:5",
"90": "gyp ERR! stack at /src/node_modules/isexe/mode.js:8:5",
"91": "gyp ERR! stack at FSReqCallback.oncomplete (fs.js:183:21)",
"92": "gyp ERR! System Linux 4.15.0-128-generic",
"93": "gyp ERR! command \"/usr/local/bin/node\" \"/src/node_modules/node-gyp/bin/node-gyp.js\" \"rebuild\" \"--verbose\" \"--libsass_ext=\" \"--libsass_cflags=\" \"--libsass_ldflags=\" \"--libsass_library=\"",
"94": "gyp ERR! cwd /src/node_modules/node-sass",
"95": "gyp ERR! node -v v14.15.3",
"96": "gyp ERR! node-gyp -v v3.8.0",
"97": "gyp ERR! not ok ",
"98": "Build failed with error code: 1",
"99": "\u001b[0m",
"101": "ERROR: The command '/bin/sh -c yarn install' returned a non-zero code: 1"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/services/store/ohif-viewer/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/ohif:4.5.9",
"test_done": true,
"timestamp": "1611822873099"
}
-----------------------------------------------------------
{
"log": {
"0": "Sending build context to Docker daemon 389.6kB",
"1": "",
"2": "Step 1/12 : FROM local-only/base-landing-page:0.1.0 as build-stage",
"3": " ---> 9e51d665d05e",
"4": "Step 2/12 : LABEL IMAGE=\"landing-page-jip\"",
"5": " ---> Using cache",
"6": " ---> dac4a7e53163",
"7": "Step 3/12 : LABEL REGISTRY_PROJECT=\"jip\"",
"8": " ---> Using cache",
"9": " ---> 85ca99ffad18",
"10": "Step 4/12 : LABEL VERSION=\"0.1.0\"",
"11": " ---> Using cache",
"12": " ---> a83dfdad9736",
"13": "Step 5/12 : LABEL CI_IGNORE=\"False\"",
"14": " ---> Using cache",
"15": " ---> e273f3df336c",
"16": "Step 6/12 : COPY files/kaapana_app/src/assets/ src/assets/",
"17": " ---> Using cache",
"18": " ---> c9aada78410d",
"19": "Step 7/12 : COPY files/kaapana_app/src/components/WelcomeViews/KaapanaWelcome.vue src/components/WelcomeViews/KaapanaWelcome.vue",
"20": " ---> Using cache",
"21": " ---> 06cef34a74c9",
"22": "Step 8/12 : RUN npm run build",
"23": " ---> Running in e66d808b6264",
"24": "\u001b[91m/bin/sh: npm: not found",
"25": "\u001b[0m",
"27": "ERROR: The command '/bin/sh -c npm run build' returned a non-zero code: 127"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/services/base/landing-page-jip/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "jip/landing-page-jip:0.1.0",
"test_done": true,
"timestamp": "1611822878000"
}
-----------------------------------------------------------
{
"log": {
"0": "Sending build context to Docker daemon 1.76MB",
"1": "",
"2": "Step 1/15 : FROM local-only/base-landing-page:0.1.0 as build-stage",
"3": " ---> 9e51d665d05e",
"4": "Step 2/15 : LABEL IMAGE=\"landing-page-tfda\"",
"5": " ---> Using cache",
"6": " ---> b08e2c052939",
"7": "Step 3/15 : LABEL REGISTRY_PROJECT=\"tfda\"",
"8": " ---> Using cache",
"9": " ---> 71912960b115",
"10": "Step 4/15 : LABEL VERSION=\"0.1.0-vdev\"",
"11": " ---> Using cache",
"12": " ---> e71425898052",
"13": "Step 5/15 : LABEL CI_IGNORE=\"False\"",
"14": " ---> Using cache",
"15": " ---> 0ff43a92c723",
"16": "Step 6/15 : COPY files/kaapana_app/src/assets/ src/assets/",
"17": " ---> Using cache",
"18": " ---> 29eebc21be29",
"19": "Step 7/15 : COPY files/kaapana_app/src/components/ src/components/",
"20": " ---> Using cache",
"21": " ---> 40da709a22af",
"22": "Step 8/15 : COPY files/kaapana_app/src/routes/ src/routes/",
"23": " ---> Using cache",
"24": " ---> 2d17c6cb67b2",
"25": "Step 9/15 : COPY files/kaapana_app/src/views src/views",
"26": " ---> Using cache",
"27": " ---> 2827a449c11f",
"28": "Step 10/15 : COPY files/kaapana_app/src/App.vue src/App.vue",
"29": " ---> Using cache",
"30": " ---> 68c444c76395",
"31": "Step 11/15 : RUN npm run build",
"32": " ---> Running in a55e02642ef7",
"33": "\u001b[91m/bin/sh: npm: not found",
"34": "\u001b[0m",
"36": "ERROR: The command '/bin/sh -c npm run build' returned a non-zero code: 127"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/services/base/landing-page-tfda/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "tfda/landing-page-tfda:0.1.0-vdev",
"test_done": true,
"timestamp": "1611822879307"
}
-----------------------------------------------------------
{
"log": {
"0": "Step 1/17 : FROM python:3.6",
"1": " ---> 6b0219e0ed75",
"2": "Step 2/17 : LABEL MAINTAINER=\"Klaus Kades,k.kades@dkfz-heidelberg.de\"",
"3": " ---> Using cache",
"4": " ---> 2f174d20a704",
"5": "Step 3/17 : LABEL DOCKER_REGISTRY=\"dktk-jip-registry.dkfz.de\"",
"6": " ---> Using cache",
"7": " ---> 6f6002d37b53",
"8": "Step 4/17 : LABEL DOCKER_REPO=\"kaapna-core\"",
"9": " ---> Using cache",
"10": " ---> c23269746e1a",
"11": "Step 5/17 : LABEL IMAGE=\"doccano-backend\"",
"12": " ---> Using cache",
"13": " ---> 6ecef864ca30",
"14": "Step 6/17 : LABEL VERSION=\"1.0-vdev\"",
"15": " ---> Using cache",
"16": " ---> f22822e9461b",
"17": "Step 7/17 : WORKDIR /app",
"18": " ---> Using cache",
"19": " ---> 5a1c5d83a5eb",
"20": "Step 8/17 : ENV PYTHONDONTWRITEBYTECODE 1",
"21": " ---> Using cache",
"22": " ---> a8fe2ceda057",
"23": "Step 9/17 : ENV PYTHONUNBUFFERED 1",
"24": " ---> Using cache",
"25": " ---> cadc47e85f56",
"26": "Step 10/17 : RUN apt-get update && apt-get install --no-install-recommends -y python3-dev libpq-dev unixodbc-dev",
"27": " ---> Using cache",
"28": " ---> 4daf6694dc36",
"29": "Step 11/17 : RUN pip install PyJWT==1.7.1 cryptography==2.8",
"30": " ---> Using cache",
"31": " ---> e7d05101f8d0",
"32": "Step 12/17 : RUN git clone https://github.com/doccano/doccano.git doccano && cd doccano && git checkout 16804ef3b993f220fa1b2a3a9650885c5474313b",
"33": " ---> Using cache",
"34": " ---> 3e1fa18220b0",
"35": "Step 13/17 : WORKDIR /app/doccano/app",
"36": " ---> Using cache",
"37": " ---> 79e3cd60df49",
"38": "Step 14/17 : RUN pip install --no-cache-dir -r requirements.txt",
"39": " ---> Running in 321b2a944f31",
"40": "Collecting apache-libcloud==2.4.0",
"41": " Downloading apache_libcloud-2.4.0-py2.py3-none-any.whl (2.9 MB)",
"42": "Collecting applicationinsights==0.11.7",
"43": " Downloading applicationinsights-0.11.7-py2.py3-none-any.whl (56 kB)",
"44": "Collecting chardet==3.0.4",
"45": " Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB)",
"46": "Collecting colour==0.1.5",
"47": " Downloading colour-0.1.5-py2.py3-none-any.whl (23 kB)",
"48": "Collecting conllu==1.3.2",
"49": " Downloading conllu-1.3.2-py2.py3-none-any.whl (9.3 kB)",
"50": "Collecting coverage==4.5.3",
"51": " Downloading coverage-4.5.3-cp36-cp36m-manylinux1_x86_64.whl (205 kB)",
"52": "Collecting dj-database-url==0.5.0",
"53": " Downloading dj_database_url-0.5.0-py2.py3-none-any.whl (5.5 kB)",
"54": "Collecting Django==2.2.10",
"55": " Downloading Django-2.2.10-py3-none-any.whl (7.5 MB)",
"56": "Collecting django-cloud-browser==0.5.0",
"57": " Downloading django-cloud-browser-0.5.0.tar.gz (52 kB)",
"58": "Collecting django-cors-headers==3.1.1",
"59": " Downloading django_cors_headers-3.1.1-py3-none-any.whl (14 kB)",
"60": "Collecting django-filter==2.0.0",
"61": " Downloading django_filter-2.0.0-py3-none-any.whl (69 kB)",
"62": "Collecting django-heroku==0.3.1",
"63": " Downloading django_heroku-0.3.1-py2.py3-none-any.whl (6.2 kB)",
"64": "Collecting django-polymorphic==2.0.3",
"65": " Downloading django_polymorphic-2.0.3-py2.py3-none-any.whl (74 kB)",
"66": "Collecting django-pyodbc-azure==2.1.0.0",
"67": " Downloading django_pyodbc_azure-2.1.0.0-py3-none-any.whl (39 kB)",
"68": "INFO: pip is looking at multiple versions of django-polymorphic to determine which version is compatible with other requirements. This could take a while.",
"69": "INFO: pip is looking at multiple versions of django-heroku to determine which version is compatible with other requirements. This could take a while.",
"70": "INFO: pip is looking at multiple versions of django-filter to determine which version is compatible with other requirements. This could take a while.",
"71": "INFO: pip is looking at multiple versions of django-cors-headers to determine which version is compatible with other requirements. This could take a while.",
"72": "INFO: pip is looking at multiple versions of django-cloud-browser to determine which version is compatible with other requirements. This could take a while.",
"73": "INFO: pip is looking at multiple versions of django to determine which version is compatible with other requirements. This could take a while.",
"74": "INFO: pip is looking at multiple versions of dj-database-url to determine which version is compatible with other requirements. This could take a while.",
"75": "INFO: pip is looking at multiple versions of coverage to determine which version is compatible with other requirements. This could take a while.",
"76": "INFO: pip is looking at multiple versions of conllu to determine which version is compatible with other requirements. This could take a while.",
"77": "INFO: pip is looking at multiple versions of colour to determine which version is compatible with other requirements. This could take a while.",
"78": "INFO: pip is looking at multiple versions of chardet to determine which version is compatible with other requirements. This could take a while.",
"79": "INFO: pip is looking at multiple versions of applicationinsights to determine which version is compatible with other requirements. This could take a while.",
"80": "INFO: pip is looking at multiple versions of <Python from Requires-Python> to determine which version is compatible with other requirements. This could take a while.",
"81": "INFO: pip is looking at multiple versions of apache-libcloud to determine which version is compatible with other requirements. This could take a while.",
"82": "\u001b[91mERROR: Cannot install -r requirements.txt (line 10), -r requirements.txt (line 11), -r requirements.txt (line 14), -r requirements.txt (line 15), -r requirements.txt (line 9) and Django==2.2.10 because these package versions have conflicting dependencies.",
"83": "\u001b[0m",
"84": "The conflict is caused by:",
"85": " The user requested Django==2.2.10",
"86": " django-cors-headers 3.1.1 depends on Django>=1.11",
"87": " django-filter 2.0.0 depends on Django>=1.11",
"88": " django-heroku 0.3.1 depends on django",
"89": " django-polymorphic 2.0.3 depends on Django>=1.11",
"90": " django-pyodbc-azure 2.1.0.0 depends on Django<2.2 and >=2.1.0",
"91": "",
"92": "To fix this you could try to:",
"93": "1. loosen the range of package versions you've specified",
"94": "2. remove package versions to allow pip attempt to solve the dependency conflict",
"95": "",
"96": "\u001b[91mERROR: ResolutionImpossible: for help visit https://pip.pypa.io/en/latest/user_guide/#fixing-conflicting-dependencies",
"97": "\u001b[0m\u001b[91mWARNING: You are using pip version 20.3.3; however, version 21.0 is available.",
"98": "You should consider upgrading via the '/usr/local/bin/python -m pip install --upgrade pip' command.",
"99": "\u001b[0m",
"101": "ERROR: The command '/bin/sh -c pip install --no-cache-dir -r requirements.txt' returned a non-zero code: 1"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/services/store/doccano/docker/doccano-backend/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/doccano-backend:1.0-vdev",
"test_done": true,
"timestamp": "1611822892263"
}
-----------------------------------------------------------
{
"log": {
"0": "Sending build context to Docker daemon 6.144kB",
"1": "",
"2": "Step 1/6 : FROM local-only/dag-installer:0.1.0",
"3": " ---> 07759e5688d7",
"4": "Step 2/6 : LABEL IMAGE=\"dag-tfda-rf-diabetes\"",
"5": " ---> Using cache",
"6": " ---> 878c6bc300ef",
"7": "Step 3/6 : LABEL VERSION=\"0.1.1-vdev\"",
"8": " ---> Using cache",
"9": " ---> 15a5ade5d209",
"10": "Step 4/6 : LABEL CI_IGNORE=\"False\"",
"11": " ---> Using cache",
"12": " ---> 0488f0703f64",
"13": "Step 5/6 : COPY dags/dag_tfda_diabetes_prediction.py /tmp/dags/",
"14": "",
"16": "ERROR: COPY failed: stat /var/lib/docker/tmp/docker-builder284829289/dags/dag_tfda_diabetes_prediction.py: no such file or directory"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/workflows/dag-installer/tfda-diabetes-prediction/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/dag-tfda-rf-diabetes:0.1.1-vdev",
"test_done": true,
"timestamp": "1611822893090"
}
-----------------------------------------------------------
{
"log": {
"0": "Sending build context to Docker daemon 20.99kB",
"1": "",
"2": "Step 1/13 : FROM dktk-jip-registry.dkfz.de/kaapana-public/dicom_phantom:1.0 as files",
"3": "",
"5": "ERROR: unknown: repository kaapana-public/dicom_phantom not found"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/services/store/store-init/dicom-init/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/dicom-init:0.1.0",
"test_done": true,
"timestamp": "1611822893460"
}
-----------------------------------------------------------
{
"log": {
"0": "Sending build context to Docker daemon 12.29kB",
"1": "",
"2": "Step 1/8 : FROM dktk-jip-registry.dkfz.de/kaapana-public/multiorgansegmentation:v0.9",
"3": "",
"5": "ERROR: unknown: repository kaapana-public/multiorgansegmentation not found"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana-internal/kaapana/workflows/processing-container/organ_segmentation_multi_ct_shapemodel/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/shape-organseg:0.1.1",
"test_done": true,
"timestamp": "1611822893854"
}
-----------------------------------------------------------
-----------------------------------------------------------
-----------------------------------------------------------
------------------ TIME NEEDED: 00:23:58 -----------------
-----------------------------------------------------------
-------------------------- DONE ---------------------------
-----------------------------------------------------------
DONEDescription
Description
Event Timeline
Comment Actions
I build the Kaapana develop branch from scratch and got the following issues:
(The last part of the log is sufficient -> issues get collected there.)
-----------------------------------------------------------
------------------- Container issues: ---------------------
-----------------------------------------------------------
{
"log": "",
"loglevel": "WARN",
"message": "Could not resolve base image: ['dktk-jip-registry.dkfz.de/kaapana-public/multiorgansegmentation:v0.9']",
"rel_file": "/home/ubuntu/kaapana/workflows/processing-container/organ_segmentation_multi_ct_shapemodel/Dockerfile",
"step": "Base-Image Check",
"suite": "Docker Container",
"test": "kaapana/shape-organseg:0.1.1",
"timestamp": "1612270482370"
}
-----------------------------------------------------------
{
"log": {
"0": "Sending build context to Docker daemon 20.99kB",
"1": "",
"2": "Step 1/13 : FROM dktk-jip-registry.dkfz.de/kaapana-public/dicom_phantom:1.0 as files",
"3": "",
"5": "ERROR: unknown: repository kaapana-public/dicom_phantom not found"
},
"loglevel": "ERROR",
"message": "Build failed!",
"rel_file": "/home/ubuntu/kaapana/services/store/store-init/dicom-init/docker/Dockerfile",
"step": "Docker build",
"suite": "Docker Container",
"test": "kaapana/dicom-init:0.1.0",
"test_done": true,
"timestamp": "1612270535173"
}
-----------------------------------------------------------
-----------------------------------------------------------
-----------------------------------------------------------
--------------------- Chart issues: -----------------------
-----------------------------------------------------------
{
"log": {
"0": "Warning: Set to ignore missing schemas",
"1": "Warning: Set to ignore missing schemas",
"2": "Warning: Set to ignore missing schemas",
"3": "Warning: Set to ignore missing schemas",
"4": "The file openmined-grid-node/charts/postgres-node/templates/deployment.yaml contains a valid Service",
"5": "The file openmined-grid-node/templates/deployment.yaml contains an invalid Service",
"6": "---> spec.ports.0.port: Invalid type. Expected: integer, given: null",
"7": "---> spec.ports.0.targetPort: Must validate one and only one schema (oneOf)",
"8": "The file openmined-grid-node/charts/postgres-node/templates/deployment.yaml contains a valid Deployment",
"9": "The file openmined-grid-node/templates/deployment.yaml contains an invalid Deployment",
"10": "---> spec.template.spec.containers.0.ports.0.containerPort: Invalid type. Expected: integer, given: null",
"11": "",
"13": "ERROR: Error: plugin \"kubeval\" exited with error"
},
"loglevel": "ERROR",
"message": "Kubeval failed: /home/ubuntu/kaapana/services/applications/openmined/openmined-grid-node/openmined-grid-node-chart/Chart.yaml",
"rel_file": "/home/ubuntu/kaapana/services/applications/openmined/openmined-grid-node/openmined-grid-node-chart/Chart.yaml",
"step": "Helm kubeval",
"suite": "Helm Charts",
"test": "openmined-grid-node:0.1.0-vdev",
"test_done": true,
"timestamp": "1612270536565"
}
-----------------------------------------------------------
{
"log": {
"0": "Warning: Set to ignore missing schemas",
"1": "Warning: Set to ignore missing schemas",
"2": "Warning: Set to ignore missing schemas",
"3": "Warning: Set to ignore missing schemas",
"4": "The file openmined-grid-network-chart/charts/postgres-gateway/templates/deployment.yaml contains a valid Service",
"5": "The file openmined-grid-network-chart/templates/deployment.yaml contains an invalid Service",
"6": "---> spec.ports.0.port: Invalid type. Expected: integer, given: null",
"7": "---> spec.ports.0.targetPort: Must validate one and only one schema (oneOf)",
"8": "The file openmined-grid-network-chart/charts/postgres-gateway/templates/deployment.yaml contains a valid Deployment",
"9": "The file openmined-grid-network-chart/templates/deployment.yaml contains an invalid Deployment",
"10": "---> spec.template.spec.containers.0.ports.0.containerPort: Invalid type. Expected: integer, given: null",
"11": "",
"13": "ERROR: Error: plugin \"kubeval\" exited with error"
},
"loglevel": "ERROR",
"message": "Kubeval failed: /home/ubuntu/kaapana/services/applications/openmined/openmined-grid-network-chart/Chart.yaml",
"rel_file": "/home/ubuntu/kaapana/services/applications/openmined/openmined-grid-network-chart/Chart.yaml",
"step": "Helm kubeval",
"suite": "Helm Charts",
"test": "openmined-grid-network-chart:0.1.0-vdev",
"test_done": true,
"timestamp": "1612270542974"
}
-----------------------------------------------------------
-----------------------------------------------------------
------------------ TIME NEEDED: 00:01:28 -----------------
-----------------------------------------------------------
-------------------------- DONE ---------------------------
-----------------------------------------------------------They are already known and are not fixable (or should be fixed like the OpenMined issue by @k656s or @m564f).
Some of the issues you posted are related to TFDA-containers - so you have to fix the Dockerfiles, I guess.
Is there something else needed for this task?