Yesterday
Yesterday
floca added a revision to T30395: [SEG] Utilities - rework/fix mask operations: Unknown Object (Differential Revision).
kislinsk added a comment to T30332: Introduce toolbar visibility presets.
Presets are now applied. So everything major is completed. Last thing missing is the startup preference page. Also, while working on that, another requirement in that regard is to consolidate tool bar preferences into a single preference page, which seems to be split in two pages at the moment.
kislinsk placed T30283: Make MITK Workbench more customizable for end-users up for grabs.
floca closed T29416: Segmentation utilities can only handle unsigned char and unsigned short, no other types as Resolved.
Resolved with T30390
kompan committed rMITK7a59bd54fe89: Fix a collection of UI bugs in Perfusion and ModelFit. (authored by kompan).
Fix a collection of UI bugs in Perfusion and ModelFit.
kompan committed rMITK891ca05736c7: Fix T30341 - Same location for buttons for T1 and T2 conversion (authored by kompan).
Fix T30341 - Same location for buttons for T1 and T2 conversion
kompan committed rMITK4e930ff758a5: T30278 - Disable conversion tab for descriptive Brix. (authored by kompan).
T30278 - Disable conversion tab for descriptive Brix.
kompan committed rMITK14653aa49d03: T30343, T30339 -Add mask info box to GenericDataFitting, MRPerfusion an… (authored by kompan).
T30343, T30339 -Add mask info box to GenericDataFitting, MRPerfusion an…
kompan committed rMITK788416a6f44e: Fix T30276-Remove AIF image selection when "Select AIF from File" is chosen (authored by kompan).
Fix T30276-Remove AIF image selection when "Select AIF from File" is chosen
The tools are not useing InitializeByLabeledImage anymore. If speed is still a problem, please reopen.
floca closed T29193: [SEG] Add a superpixel tool, a subtask of T29191: [SEG] New segmentation tool candidates, as Spite.
Reopen if the request really appears. Currently I guess things like SAM and medSAM will also do well.
floca added a comment to T29197: [Segmentation] Is the classificationsegmentation-plugin used / required?.
I would tend to remove it.
floca moved T29197: [Segmentation] Is the classificationsegmentation-plugin used / required? from Backlog to MITK Meeting on the Request for Discussion board.
floca closed T28264: [Segmentation Utilities] Various issues, a subtask of T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation, as Resolved.
floca moved T30395: [SEG] Utilities - rework/fix mask operations from Backlog to Cycle on the MITK (v2024.06) board.
T30390 Refactor_multi_label_bool_ops
fixed review remarks
floca committed rMITKd229ff61b06e: Improved visual label selection feedback in QmitkBooleanOperationWidget (authored by floca).
Improved visual label selection feedback in QmitkBooleanOperationWidget
fixed gcc errors
Reworked Boolean widget
floca closed T30390: [SEG] Utilities - rework/fix boolean operations as Resolved by committing rMITK0841f16dd413: Reworked Boolean widget.
floca closed T30390: [SEG] Utilities - rework/fix boolean operations, a subtask of T28176: [Segmentation] Inspection of module and plugin, as Resolved.
Fixed error in selection docu example
kislinsk added a comment to T30332: Introduce toolbar visibility presets.
Presets are now loaded at runtime from the :/org_mitk_presets resource path. They can build upon each other, e.g., the ModelFit preset just adds the Fitting and Perfusion categories to the categories of the Classic preset.
kislinsk added a comment to T30332: Introduce toolbar visibility presets.
Pushed new branch to rMITK MITK: feature/T30332-ToolBarPresets.
Thu, Apr 18
Thu, Apr 18
floca moved T30387: [SEG] More visual feedback by supporting highlighted labels in render window. from Backlog to Cycle on the MITK (v2024.06) board.
floca moved T30255: Allow render window utility widgets on all sides from Backlog to Cycle on the MITK (v2024.06) board.
floca moved T29076: [Segmentation] Pressing DEL should delete a label from Backlog to Cycle on the MITK (v2024.06) board.
floca moved T27354: Make conversion functions for different DataNode lists/vector types publicly available from Backlog to Cycle on the MITK (v2024.06) board.
floca moved T30247: MONAILabel: Improve doxygen docstrings from Backlog to Cycle on the MITK (v2024.06) board.
floca moved T30283: Make MITK Workbench more customizable for end-users from Backlog to Cycle on the MITK (v2024.06) board.
floca moved T30391: [Segmentation] Python 3.12 support for installable AI tools from Backlog to Cycle on the MITK (v2024.06) board.
floca moved T30390: [SEG] Utilities - rework/fix boolean operations from Backlog to Cycle on the MITK (v2024.06) board.
floca placed T27554: Handling of 2D and 2D+t sonographic (US) images up for grabs.
floca closed T28525: Design refactoring of LabelSetImage and associated classes, a subtask of T28524: Refactor LabelSetImage and associated classes., as Resolved.
Wed, Apr 17
Wed, Apr 17
kislinsk added a comment to T30393: Move start scripts for command-line apps in installer into apps subdirectory.
Deleted branch from rMITK MITK: feature/T30393-CmdLineAppStartScripts.
Remove stub for deprecated function
kislinsk committed rMITKee1d3036ad1b: Make Linux start script for apps more robust (authored by kislinsk).
Make Linux start script for apps more robust
kislinsk committed rMITK66501c045270: Move start scripts of command-line apps into apps subdirectory (authored by kislinsk).
Move start scripts of command-line apps into apps subdirectory
kislinsk committed rMITKc8c443f35614: Migrate custom command-line app script to mitkFunctionCreateCommandLineApp (authored by kislinsk).
Migrate custom command-line app script to mitkFunctionCreateCommandLineApp
kislinsk committed rMITKed252ae783e7: Merge branch 'feature/T30393-CmdLineAppStartScripts' into develop (authored by kislinsk).
Merge branch 'feature/T30393-CmdLineAppStartScripts' into develop
a178n committed rMITK34b810129724: Merge branch 'develop' into feature/T30353-tool-confirm-exit (authored by a178n).
Merge branch 'develop' into feature/T30353-tool-confirm-exit
a178n committed rMITK4e153e1b8ac0: Add confirm dialog before exiting Totalseg tool (authored by a178n).
Add confirm dialog before exiting Totalseg tool
Update message text
a178n committed rMITK7d9ec741ede5: Rename ConfirmBeforeExit and moving its implementation to SegWithPreviewTool… (authored by a178n).
Rename ConfirmBeforeExit and moving its implementation to SegWithPreviewTool…
Update qmessage box text
Confirm before tool exit
Tue, Apr 16
Tue, Apr 16
kislinsk changed the visibility for F3592048: Screenshot 2024-04-16 231843.png.
kislinsk added a comment to T30332: Introduce toolbar visibility presets.
The current state of presets/a startup dialog is as follows:
Mon, Apr 15
Mon, Apr 15
floca added a revision to T30390: [SEG] Utilities - rework/fix boolean operations: Unknown Object (Differential Revision).
T28796 Refactor_multi_label_morph_ops
floca committed rMITK6031a526b4e5: Fixed QmitkMultiLabelInspector update error of (Lock and Visibility) (authored by floca).
Fixed QmitkMultiLabelInspector update error of (Lock and Visibility)
Fixed review comments
fixed review remarks
floca closed T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly as Resolved by committing rMITK6b88efaafec0: Reworked morphological operation widget..
floca committed rMITKfddd89627124: Extracted CreateLabelMask out of LabelSetImage and moved to… (authored by floca).
Extracted CreateLabelMask out of LabelSetImage and moved to…
Reworked morphological operation widget.
Fixed gcc errors
Added LabelSetImage::AddLabelWithContent
floca committed rMITKc454448ad60c: Improved QmitkMultiLabelInspector to expand sub trees automatically (authored by floca).
Improved QmitkMultiLabelInspector to expand sub trees automatically
floca committed rMITKdca43b582b37: Extracted CreateLabelMask out of LabelSetImage and moved to… (authored by floca).
Extracted CreateLabelMask out of LabelSetImage and moved to…
ok. thanks for investigating. I will have a look.
a178n renamed T30392: [Segmentation] Totalsegmentator & Otsu is buggy from [Segmentation] Totalsegmentator is buggy to [Segmentation] Totalsegmentator & Otsu is buggy.
a178n added a comment to T30392: [Segmentation] Totalsegmentator & Otsu is buggy.
Further testing/debugging reveals that the error occurs in TotalSegmentatorTool::UpdatePrepare() method at preview->RemoveLabels(preview->GetAllLabelValues()). More precisely, the LabelSetImage::RemoveLabel method has this->InvokeEvent(LabelRemovedEvent(pixelValue)); which causes the exception. This issue is also applicable for Otsu tool (hence updating the title of this task).
Fri, Apr 12
Fri, Apr 12
kislinsk added a comment to T29652: [Preferences] Cannot open SAM preference page after tool activation.
Since it is the only preference page not loading and it is only happening when your tool is active it is most definitely related to a shared resource that is blocked by your tool. Something like the Python process or its encapsulation. Since it does not seem to be a complete dead lock (?) probably something like a mutex or similar is involved? Or whatever the internals of start_python_daemon() are, only one instance may be active per process maybe?
Thu, Apr 11
Thu, Apr 11
floca added a revision to T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly: Unknown Object (Differential Revision).
kislinsk added a revision to T30393: Move start scripts for command-line apps in installer into apps subdirectory: Unknown Object (Differential Revision).
kislinsk added a comment to T30393: Move start scripts for command-line apps in installer into apps subdirectory.
Pushed new branch to rMITK MITK: feature/T30393-CmdLineAppStartScripts.
kislinsk triaged T30393: Move start scripts for command-line apps in installer into apps subdirectory as Normal priority.
Fixed review remarks
floca committed rMITK7c1b545dfcba: Merge branch 'feature/T29390-Improve_conversion_for_multilabel' of ssh… (authored by floca).
Merge branch 'feature/T29390-Improve_conversion_for_multilabel' of ssh…
floca committed rMITKccb469becb9f: Merge branch 'feature/T29390-Improve_conversion_for_multilabel' into develop (authored by floca).
Merge branch 'feature/T29390-Improve_conversion_for_multilabel' into develop
floca added a comment to T29390: How to ease the handling of external generated segmentations.
Pushed new branch to rMITK MITK: feature/T29390-Improve_conversion_for_multilabel.
Wed, Apr 10
Wed, Apr 10
kislinsk added a comment to T29390: How to ease the handling of external generated segmentations.
Deleted branch from rMITK MITK: bugfix/T29390-FixLandingOfD910.
kislinsk added a comment to T29390: How to ease the handling of external generated segmentations.
Pushed new branch to rMITK MITK: bugfix/T29390-FixLandingOfD910.
kislinsk added a revision to T29390: How to ease the handling of external generated segmentations: Restricted Differential Revision.
kislinsk committed rMITK561a06dc3c79: T29390 Improve_conversion_for_multilabel (authored by kislinsk).
T29390 Improve_conversion_for_multilabel
kislinsk committed rMITK7efda63428f8: T29390 Improve_conversion_for_multilabel (authored by kislinsk).
T29390 Improve_conversion_for_multilabel
floca added a revision to T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly: Restricted Differential Revision.
T29390 Improve_conversion_for_multilabel
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