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Mon, Sep 16

kislinsk closed T30247: MONAILabel: Improve doxygen docstrings as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30247: MONAILabel: Improve doxygen docstrings, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30241: [MxN] Rethink select-all logic in MxN data selection as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30242: [MONAILabel] Trouble activating SSL support in Httplib, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30279: [Statistics] Fix cutoff of non-closed planar figures as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30267: [Segmentation] Undo/Redo does not work for many aspects of segmentation as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kislinsk closed T30268: [Checklist] Segmentation 3D Interpolation as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kislinsk closed T30257: Changing opacity messes up rendering order as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kislinsk closed T30293: Introduce new interoperability/developer-friendly scene file format (including reader) as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30301: Move Totalsegmentator installation into Preferences as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30283: Make MITK Workbench more customizable for end-users as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30313: SegmentAnyBone in MITK, a subtask of T29191: [SEG] New segmentation tool candidates, as Resolved.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30314: MedSAM in MITK, a subtask of T29191: [SEG] New segmentation tool candidates, as Resolved.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30314: MedSAM in MITK as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30328: Failure when loading DICOM files with missing series instance UID as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30333: Add introductory startup dialog or Welcome page, a subtask of T30283: Make MITK Workbench more customizable for end-users, as Resolved.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30333: Add introductory startup dialog or Welcome page as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30369: [Statistics] Position of minimum and maximum are one off for masks of rotated images as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30372: [Statistics] Replace secondary mask in mitk::ImageStatisticsGenerator by an "AndMaskGenerator" as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Breaking Change

kislinsk closed T30370: [Statistics] Order labels the same way as in the Segmentation View as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30415: [Level Window] Changing level window with multiple images is confusing as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kislinsk closed T30410: [Segmentation] 2-d interpolation does not interpolate between multiple slices as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30425: [SEG] Segment Anything - Loading errors occur when opening the preferences as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kislinsk closed T30424: [SEG] Reduce size of dots in Segment Anything as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kislinsk closed T30412: [Statistics] Planar figure cannot be set as ROI for askew images as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30433: [Perfusion] Inconsistent appearance of info box message "Cannot compute parameters. No node selected." as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30431: [TotalSeg] Installation status for user as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30427: [SEG] No status change message after changing model type to ‘vit_l’. as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kislinsk closed T30435: Rename "Time" to "Timestep" in Image Navigator? as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kislinsk closed T30428: DCE MR Perfusion DataFit View: Selected Mask widget can't find DICOM segmentation nodes as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30429: Bounding box Corner control as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kislinsk closed T30434: [Perfusion] Concentration curve converter VFA box tab key skips flip angles as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kislinsk closed T30432: [Perfusion] Possible to write text into info box as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30454: IO Support for Blosc2 as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30441: [Perfusion] Baseline range bug for variable flip angle conversion as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kislinsk closed T30446: Decouple Workbench plugin from optional views as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30440: [Perfusion] Error when loading AIF from csv file in DCE MR Perfusion DataFit View as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kislinsk closed T30439: [Perfusion] Only a selection of debug parameter images generated as sub-nodes as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion, Checklist

kislinsk closed T30490: [Seg] Add Support TotalSegmentator >= v2.3 as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30494: Standard Display F1 help - missing content as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30509: [Seg] MedSAM2 in MITK as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30508: [Totalseg] Enable licenced tasks in the tool as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30516: Update list of available MiniApps in MITK documentation as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30517: Remove suffix "MiniApp" from Pharmacokinetics mini apps as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30515: OSIPI-suggested xml file in DCE MRI and Generic DataFit View as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T28561: Refactor/Fix mitk::SegmentationInteractor::ChangeActiveLabel as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T29322: [SEG] Refactor code to avoid FillSliceInSlice and FillContourInSlice as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T28237: Refactor QmitkChart as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T29392: [SEG] Add dedicated writer to store multi-label images in nifti as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T29483: [Segmentation] Gracefully handle out of memory situations as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T29553: Include label instances in label set presets as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T29479: Planar figures do not work as expected on arbitrarily oriented slices as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30158: [DCM][SEG] Check why unittests did not detect breaking support of DCM Seg and fix the (unit) test as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30158: [DCM][SEG] Check why unittests did not detect breaking support of DCM Seg and fix the (unit) test, a subtask of T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number, as Resolved.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Request for Discussion

kislinsk closed T30180: [Statistics] Median is approximated and completely off if sample size is small as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30375: [Statistics] Remove HotspotMaskGenerator or rework and fix tests as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30512: [SEG] Allow custom label group names as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30468: [Segmentation] Changing first label in Boolean Operations is hard as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)

kislinsk closed T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Request for Discussion

kislinsk updated the task description for T30160: Move MITK to our GitLab instance.

Mon, Sep 16, 11:10 AM · Moved to git.dkfz.de, MITK (v2024.12)

Thu, Sep 12

kompan triaged T30517: Remove suffix "MiniApp" from Pharmacokinetics mini apps as Normal priority.

Thu, Sep 12, 10:51 AM · Moved to git.dkfz.de, MITK (v2024.12)

kompan triaged T30516: Update list of available MiniApps in MITK documentation as Normal priority.

Thu, Sep 12, 10:44 AM · Moved to git.dkfz.de, MITK (v2024.12)

Wed, Sep 11

floca moved T30328: Failure when loading DICOM files with missing series instance UID from Backlog to Cycle on the MITK (v2024.12) board.

Wed, Sep 11, 3:54 PM · Moved to git.dkfz.de, MITK (v2024.12)

floca added a comment to T30328: Failure when loading DICOM files with missing series instance UID.

@s434n do you have an example case? One needs to check, if it is the same spote in the call tree (and therefor the same solution) or if your point should be a different ticket.

Wed, Sep 11, 3:54 PM · Moved to git.dkfz.de, MITK (v2024.12)

a178n closed T30506: [Seg] Introduce time out for MONAILabel in Preferences as Resolved.

Time out was added and documentation was updated.

Wed, Sep 11, 11:26 AM · MITK (v2024.12)

a178n added a revision to T30506: [Seg] Introduce time out for MONAILabel in Preferences: Restricted Differential Revision.

Wed, Sep 11, 11:25 AM · MITK (v2024.12)

kompan moved T30515: OSIPI-suggested xml file in DCE MRI and Generic DataFit View from Backlog to Cycle on the MITK (v2024.12) board.

Wed, Sep 11, 9:44 AM · Moved to git.dkfz.de, MITK (v2024.12)

kompan triaged T30515: OSIPI-suggested xml file in DCE MRI and Generic DataFit View as Normal priority.

Wed, Sep 11, 9:43 AM · Moved to git.dkfz.de, MITK (v2024.12)

Tue, Sep 10

s434n closed T30513: Remove MiniApp suffix from MitkFuse3Dto4DImage as Invalid.

Tue, Sep 10, 5:03 PM · MITK (v2024.12)

s434n triaged T30513: Remove MiniApp suffix from MitkFuse3Dto4DImage as Normal priority.

Tue, Sep 10, 5:00 PM · MITK (v2024.12)

s434n added a comment to T30328: Failure when loading DICOM files with missing series instance UID.

Maybe some extension: it would be nice if a warning could be general for incomplete DICOM files. I recently had a different case where the modality was missing, and at the moment it is quite difficult to figure out what information is missing since there is just a crash with little information.
So if we add a warning here, maybe it could be in a way that works for any required DICOM tags that are missing.

Tue, Sep 10, 10:55 AM · Moved to git.dkfz.de, MITK (v2024.12)

Mon, Sep 9

kompan moved T30439: [Perfusion] Only a selection of debug parameter images generated as sub-nodes from Backlog to Cycle on the MITK (v2024.12) board.

Mon, Sep 9, 1:25 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion, Checklist

kompan moved T30441: [Perfusion] Baseline range bug for variable flip angle conversion from Backlog to Cycle on the MITK (v2024.12) board.

Mon, Sep 9, 1:25 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kompan moved T30440: [Perfusion] Error when loading AIF from csv file in DCE MR Perfusion DataFit View from Backlog to Cycle on the MITK (v2024.12) board.

Mon, Sep 9, 1:25 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kompan moved T30434: [Perfusion] Concentration curve converter VFA box tab key skips flip angles from Backlog to Cycle on the MITK (v2024.12) board.

Mon, Sep 9, 1:24 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kompan moved T30433: [Perfusion] Inconsistent appearance of info box message "Cannot compute parameters. No node selected." from Backlog to Cycle on the MITK (v2024.12) board.

Mon, Sep 9, 1:24 PM · Moved to git.dkfz.de, MITK (v2024.12)

kompan moved T30432: [Perfusion] Possible to write text into info box from Backlog to Cycle on the MITK (v2024.12) board.

Mon, Sep 9, 1:24 PM · Moved to git.dkfz.de, MITK (v2024.12)

kompan moved T26288: MRI Perfusion view should only generate concentration images once from Backlog to Cycle on the MITK (v2024.12) board.

Mon, Sep 9, 1:23 PM · Moved to git.dkfz.de, MITK (v2024.12)

kompan moved T30296: [Perfusion] Concentration Curve Converter view does not hide options when deselecting 3D/4D from Backlog to Cycle on the MITK (v2024.12) board.

Mon, Sep 9, 1:22 PM · Moved to git.dkfz.de, MITK (v2024.12)

kompan moved T30436: [Perfusion] Checkbox for Start Parameters instead of radio button from Backlog to Cycle on the MITK (v2024.12) board.

Mon, Sep 9, 1:12 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist

kompan moved T30204: Improve visibility between help files for perfusion from Backlog to Cycle on the MITK (v2024.12) board.

Mon, Sep 9, 1:10 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion

kompan closed T29638: ModelFit Inspector crahes sometimes on data selection as Resolved.

At least for me the crash hasn't occured for a long time (I believe since around the 2023.12 release) despite working using the ModelFitInspectorView very often. So the bug might have been resolved along with another fix "accidendally". I will close the task for now, however, should the error re-appear, the task can be re-opened.

Mon, Sep 9, 1:09 PM · MITK (v2024.12)