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kislinsk added a comment to T30386: VectorProperties are not getting modified by SetValue.

Yes, this is to be categorized as a bug. All ITK-based objects should call Modified() in their setter methods, if the values actually changed.

Thu, Mar 28, 11:56 AM · Request for Discussion, MITK
floca triaged T30386: VectorProperties are not getting modified by SetValue as Low priority.
Thu, Mar 28, 11:43 AM · Request for Discussion, MITK

Wed, Mar 20

a178n assigned T30306: [Segmentation] Convertion from semantic segmentations to instance segmentations to floca.
Wed, Mar 20, 11:53 AM · MITK
s434n added a parent task for T30241: [MxN] Rethink select-all logic in MxN data selection: T30360: [MxN] Add group synchronization.
Wed, Mar 20, 11:36 AM · MITK (v2024.06)
kislinsk moved T30376: Reduce noise in terminal during startup from Backlog to MITK Meeting on the Request for Discussion board.
Wed, Mar 20, 10:35 AM · MITK (v2024.06)
kislinsk added a project to T30376: Reduce noise in terminal during startup: Request for Discussion.
Wed, Mar 20, 10:35 AM · MITK (v2024.06)
kislinsk moved T30377: Clean up/rewrite View Navigator from Backlog to MITK Meeting on the Request for Discussion board.
Wed, Mar 20, 10:34 AM · MITK (v2024.06)
kislinsk added a project to T30377: Clean up/rewrite View Navigator: Request for Discussion.
Wed, Mar 20, 10:34 AM · MITK (v2024.06)

Tue, Mar 19

floca triaged T30375: [Statistics] Remove HotspotMaskGenerator or rework and fix tests as High priority.
Tue, Mar 19, 8:50 AM · Next Milestone, MITK

Thu, Mar 14

floca moved T29557: [Segmentation] "Delete group" button is inactive if there are multiple groups but no labels from Backlog to MITK Meeting on the Request for Discussion board.
Thu, Mar 14, 12:18 PM · Next Milestone, MITK
floca added a project to T29557: [Segmentation] "Delete group" button is inactive if there are multiple groups but no labels: Request for Discussion.
Thu, Mar 14, 12:18 PM · Next Milestone, MITK

Mon, Mar 11

floca moved T29584: [Interpolation] Confirming 3D interpolation does not set mode to "disabled" from Backlog to MITK Meeting on the Request for Discussion board.
Mon, Mar 11, 11:02 AM · MITK (v2024.06), Checklist
floca added a project to T29584: [Interpolation] Confirming 3D interpolation does not set mode to "disabled": Request for Discussion.

I would change the checklist. With the multilabel support it makes sense to keep it open, if you have confirmed an interpolation, because you might directly go to the next label and confirm there as well...

Mon, Mar 11, 11:02 AM · MITK (v2024.06), Checklist

Wed, Mar 6

a178n moved T30354: [MedSAM] Update SAM python daemon script for MedSAM from Backlog to Segmentation on the MITK (v2024.06) board.
Wed, Mar 6, 9:52 AM · MITK (v2024.06)
kislinsk added a comment to T30337: Allow custom product name and further customizations.

More context:

  • There's already MITK_CUSTOM_REVISION_DESC, which allows to change the tag/commit hash that is displayed in the Workbench as version like "v2023.12" and I think also in the package names generated by CPack.
  • Exclusion/visibility of views, toolbars, and perspectives will be part of our customization efforts for the upcoming release and is scheduled to be implemented in March.
  • Toolbar visibility is already implemented (just recently) as preferences.
Wed, Mar 6, 9:39 AM · MITK
a178n added a subtask for T30314: MedSAM in MITK: T30356: [MedSAM] Create Test user checklist.
Wed, Mar 6, 9:28 AM · MITK (v2024.06)
a178n triaged T30354: [MedSAM] Update SAM python daemon script for MedSAM as Normal priority.
Wed, Mar 6, 9:11 AM · MITK (v2024.06)

Mon, Mar 4

floca moved T30348: [Statistics] QmitkImagesStatisticsTreeModel currently does not update when names of inputs changes from Backlog to MITK Meeting on the Request for Discussion board.
Mon, Mar 4, 9:37 PM · MITK
floca created T30348: [Statistics] QmitkImagesStatisticsTreeModel currently does not update when names of inputs changes.
Mon, Mar 4, 9:36 PM · MITK

Sun, Mar 3

floca moved T30346: [SEG] Are PointCloudScoringFilter and FeatureBasedEdgeDetectionFilter still in use? (also other filters in segmentation/algorithms) from Backlog to MITK Meeting on the Request for Discussion board.
Sun, Mar 3, 4:34 PM · MITK
floca created T30346: [SEG] Are PointCloudScoringFilter and FeatureBasedEdgeDetectionFilter still in use? (also other filters in segmentation/algorithms).
Sun, Mar 3, 4:34 PM · MITK

Feb 28 2024

kompan moved T30204: Improve visibility between help files for perfusion from Backlog to Cycle on the MITK (v2024.06) board.
Feb 28 2024, 9:21 AM · Request for Discussion, MITK (v2024.06)

Feb 27 2024

floca moved T29168: [Multilabel Segmentation] Definition and usage of masking and maskstamping from Backlog to MITK Meeting on the Request for Discussion board.
Feb 27 2024, 9:26 AM · MITK (v2024.06)
floca moved T30241: [MxN] Rethink select-all logic in MxN data selection from Backlog to mxn MultiWidget on the MITK (v2024.06) board.
Feb 27 2024, 9:21 AM · MITK (v2024.06)
floca moved T30241: [MxN] Rethink select-all logic in MxN data selection from Backlog to MITK Meeting on the Request for Discussion board.
Feb 27 2024, 9:21 AM · MITK (v2024.06)
floca added a project to T30241: [MxN] Rethink select-all logic in MxN data selection: Request for Discussion.

@s434n What is your concrete proposal/idea here?

Feb 27 2024, 9:21 AM · MITK (v2024.06)
floca moved T30147: MONAI Label: New approach using python wrapper?? from Backlog to Segmentation on the MITK (v2024.06) board.
Feb 27 2024, 9:14 AM · MITK (v2024.06), Request for Discussion
floca moved T30314: MedSAM in MITK from Backlog to MITK Meeting on the Request for Discussion board.
Feb 27 2024, 9:09 AM · MITK (v2024.06)
floca moved T30314: MedSAM in MITK from Backlog to Segmentation on the MITK (v2024.06) board.
Feb 27 2024, 9:09 AM · MITK (v2024.06)

Feb 26 2024

kompan added a project to T30204: Improve visibility between help files for perfusion: Request for Discussion.
Feb 26 2024, 11:43 AM · Request for Discussion, MITK (v2024.06)

Feb 23 2024

kislinsk moved T30337: Allow custom product name and further customizations from Backlog to MITK Meeting on the Request for Discussion board.
Feb 23 2024, 12:15 PM · MITK
kislinsk added a project to T30337: Allow custom product name and further customizations: Request for Discussion.
Feb 23 2024, 12:15 PM · MITK

Feb 21 2024

floca closed T29381: Move Multilabel classes to Core module as Wontfix.
Feb 21 2024, 11:13 AM · MITK, Request for Discussion
s434n added a comment to T30328: Failure when loading DICOM files with missing series instance UID.

I am also in favor of option 3.

Feb 21 2024, 11:04 AM · MITK (v2024.06)

Feb 9 2024

kislinsk added a comment to T30328: Failure when loading DICOM files with missing series instance UID.

I also vote for 3.

Feb 9 2024, 6:50 AM · MITK (v2024.06)

Feb 8 2024

floca moved T30328: Failure when loading DICOM files with missing series instance UID from Backlog to MITK Meeting on the Request for Discussion board.
Feb 8 2024, 7:20 PM · MITK (v2024.06)
floca created T30328: Failure when loading DICOM files with missing series instance UID.
Feb 8 2024, 7:20 PM · MITK (v2024.06)

Feb 7 2024

s434n closed T30307: Join the dcmqi planning at NA-MIC/Project week. as Resolved.

Has been clarified

Feb 7 2024, 11:25 AM · Request for Discussion, MITK

Feb 1 2024

floca added a project to T30314: MedSAM in MITK: Request for Discussion.

Reason: see my comment above.

Feb 1 2024, 10:50 AM · MITK (v2024.06)

Jan 24 2024

floca closed T29454: Clarify the versions/editions we publish as installer as Resolved.

Closed, we put everythin in own installer and solve it by configuration:
T30284
T30310

Jan 24 2024, 10:48 AM · MITK (v2024.06), Request for Discussion

Jan 23 2024

kislinsk moved T30312: Remove unused, legacy, or obsolete modules and plugins from Backlog to MITK Meeting on the Request for Discussion board.
Jan 23 2024, 11:52 AM · MITK (v2024.06)
kislinsk triaged T30312: Remove unused, legacy, or obsolete modules and plugins as Normal priority.
Jan 23 2024, 11:52 AM · MITK (v2024.06)

Jan 18 2024

floca moved T30310: Add new views, e.g. for Seg Task List or Perfusion from Backlog to MITK Meeting on the Request for Discussion board.
Jan 18 2024, 6:02 PM · Missing Info, MITK
floca created T30310: Add new views, e.g. for Seg Task List or Perfusion.
Jan 18 2024, 6:02 PM · Missing Info, MITK

Jan 10 2024

floca updated subscribers of T30307: Join the dcmqi planning at NA-MIC/Project week..

@fedorov I added you to "warn" 😉 you, that will join the effort. Great idea!

Jan 10 2024, 9:36 AM · Request for Discussion, MITK
floca moved T30307: Join the dcmqi planning at NA-MIC/Project week. from Backlog to MITK Meeting on the Request for Discussion board.
Jan 10 2024, 9:34 AM · Request for Discussion, MITK
floca added a project to T30307: Join the dcmqi planning at NA-MIC/Project week.: Request for Discussion.
Jan 10 2024, 9:34 AM · Request for Discussion, MITK

Jan 5 2024

kislinsk moved T30306: [Segmentation] Convertion from semantic segmentations to instance segmentations from Backlog to MITK Meeting on the Request for Discussion board.
Jan 5 2024, 1:31 PM · MITK
kislinsk triaged T30306: [Segmentation] Convertion from semantic segmentations to instance segmentations as Wishlist priority.
Jan 5 2024, 1:31 PM · MITK

Dec 5 2023

kislinsk closed T28232: Shapemodels as Wontfix.

Hi there! 🙂

Dec 5 2023, 10:43 AM · Auto-closed, Kaapana (internal), Request for Discussion, MITK
kislinsk closed T28550: MitkResampleImage and MitkResampleMask CL tools produce result with different dimensions as Wontfix.

Hi there! 🙂

Dec 5 2023, 10:43 AM · Auto-closed, Request for Discussion, MITK
kislinsk closed T28159: Officially support MITK using system Qt as Wontfix.

Hi there! 🙂

Dec 5 2023, 10:43 AM · Auto-closed, CI, Request for Discussion, MITK
kislinsk closed T28724: nnUNet as a separate view in MITK as Wontfix.

Hi there! 🙂

Dec 5 2023, 10:43 AM · Auto-closed, MITK, Request for Discussion
kislinsk closed T28755: [Segmentation] Labels can only be Confirmed once in Segmentation tools after Preview as Wontfix.

Hi there! 🙂

Dec 5 2023, 10:43 AM · Auto-closed, Request for Discussion, MITK
kislinsk edited projects for T29596: Move out FAST checkbox from Advanced, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Request for Discussion, Checklist
kislinsk edited projects for T29595: Make nnUNet folder parsing more resilient to stray folders, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Request for Discussion, Checklist
kislinsk edited projects for T29390: How to ease the handling of external generated segmentations, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06)
kislinsk edited projects for T29594: Improve MITK help text for nnUNet tool, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Checklist, Request for Discussion
kislinsk edited projects for T29454: Clarify the versions/editions we publish as installer, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T8140: Reimplement volume annotations for segmentations, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion, Bugzilla
kislinsk edited projects for T19477: Select which dicom tags are used to create a nodes name, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion, Bugzilla
kislinsk edited projects for T25804: [Selection concept] Set 'selected' property when using the new selection concept, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T25445: MultiLabel segmentation mapper is very slow, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T27120: Remove old deprecated property names of DICOM information, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary", added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist, Request for Discussion
kislinsk edited projects for T27090: Provide standard NodePredicates, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T27307: Modifying the data does not modify the data node, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T27189: REST API for data storage, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Restricted Project, Request for Discussion
kislinsk edited projects for T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06)
kislinsk edited projects for T28499: Refactor/rewrite RegionGrowing3D tool, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06)
kislinsk edited projects for T28544: Difference of loading RT data DicomBrowser vs. "Standard loading", added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T28675: Boolean Operations in Segmentation utilities are slow, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T29090: [3D Segmentation] Threshold tool preview draws contours in green and not in the active label color. , added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion, Checklist
kislinsk edited projects for T29168: [Multilabel Segmentation] Definition and usage of masking and maskstamping, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06)
kislinsk edited projects for T29140: [Selection widget] Optional selection can not be removed if a fitting node is always found, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T29076: [Segmentation] Pressing DEL should delete a label, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T28785: Levelwindow UX proposals/comments, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist, Missing Info, Request for Discussion
kislinsk edited projects for T29210: Clarify / remove axis-labeling for anatomical planes, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T29197: [Segmentation] Is the classificationsegmentation-plugin used / required?, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T29389: Python utility module, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06)
kislinsk edited projects for T30147: MONAI Label: New approach using python wrapper??, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T30164: [Segmentation] [Bug] 2D RGB image not correctly handled by SegPreviewTool API tool, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Missing Info, Request for Discussion
kislinsk edited projects for T30229: MONAI Label tool: Introduce time out parameter entry in Preferences, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion

Dec 4 2023

floca closed T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem as Resolved.

@gaoh PLease feel free to reopen if there is still a problem.

Dec 4 2023, 2:22 PM · Next Milestone, Request for Discussion, MITK

Nov 29 2023

floca closed T30207: Add org.mitk.gui.qt.dicominspector to release as Resolved.
Nov 29 2023, 9:53 AM · Request for Discussion, MITK (v2023.12)

Nov 28 2023

floca added a revision to T30207: Add org.mitk.gui.qt.dicominspector to release: Restricted Differential Revision.
Nov 28 2023, 6:42 PM · Request for Discussion, MITK (v2023.12)

Nov 22 2023

s434n added a comment to T29454: Clarify the versions/editions we publish as installer.

MITK Workbench XL
MITK Workbench - extra

Nov 22 2023, 12:07 PM · MITK (v2024.06), Request for Discussion
kompan added a comment to T29454: Clarify the versions/editions we publish as installer.

Some more name ideas:
MITK Workbench Plus
MITK Workbench - Advanced Edition
MITK Workbench - Extended Edition
MITK Deluxe (ok, too far, I'll better stop now...)

Nov 22 2023, 11:04 AM · MITK (v2024.06), Request for Discussion
kislinsk added a comment to T29454: Clarify the versions/editions we publish as installer.

Name suggestion: MITK Workbench - Science Edition

Nov 22 2023, 10:50 AM · MITK (v2024.06), Request for Discussion

Nov 21 2023

s434n merged task T28800: [Segmentation] Threshold tool updates after each digit if typed in manually into Restricted Maniphest Task.
Nov 21 2023, 9:48 AM · MITK (v2023.12), Checklist, Request for Discussion

Nov 20 2023

floca updated subscribers of T29562: [GrowCut] "Undo" only changes slices with seed images.

Thats because 3D Tools in total do not support undo redo currently.
Sofar we havent dared due to the memory footprint (as it would mean storing copies of the volume); but also never tested it.
May be we should ceck if it is OK in conjunction with compression (introduced by @kislinsk some time ago) and if needed limitations (a max step limit, or clearing the history if the segmentation is finished), to avoid extrem memory consumption due to long undo/redo history.

Nov 20 2023, 11:23 AM · Request for Discussion, MITK
kislinsk added a parent task for T29562: [GrowCut] "Undo" only changes slices with seed images: T30267: [Segmentation] Undo/Redo does not work for many aspects of segmentation.
Nov 20 2023, 10:50 AM · Request for Discussion, MITK

Nov 9 2023

a178n added a comment to T30240: MonaiLabel: How to support more apps.

New checkbox "Allow all models" added to Preferences. Changes included in D875

Nov 9 2023, 4:23 PM · MITK (v2024.06)
a178n added a revision to T30240: MonaiLabel: How to support more apps: Restricted Differential Revision.
Nov 9 2023, 4:22 PM · MITK (v2024.06)

Nov 7 2023

floca added a comment to T30240: MonaiLabel: How to support more apps.

I would lean to adding a preference "allow unsupported models" (default ==false). If people activate it, they can see all models (that are not blacklisted) and not just the white listed (verified) once.
If the risk is communicated and users are willing to take it, then I would not actively prevent people from using models (as long as they don't crash MITK or so).

Nov 7 2023, 12:02 PM · MITK (v2024.06)
a178n triaged T30240: MonaiLabel: How to support more apps as Normal priority.
Nov 7 2023, 10:18 AM · MITK (v2024.06)

Oct 27 2023

floca placed T28499: Refactor/rewrite RegionGrowing3D tool up for grabs.
Oct 27 2023, 1:12 PM · MITK (v2024.06)
floca placed T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep up for grabs.
Oct 27 2023, 1:12 PM · MITK (v2024.06)
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Backlog to MITK Meeting on the Request for Discussion board.
Oct 27 2023, 1:11 PM · MITK (v2024.06)