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Jun 12 2023

a178n added a comment to T29566: TotalSegmentator GUI bug: Install button not Activated correctly.

Deleted branch from rMITK MITK: feature/T29566-totalseg-checklist-bugfix.

Jun 12 2023, 11:09 AM · Checklist, MITK (v2023.04)
a178n added a comment to T29541: nnUNet tool Update documentation.

Deleted branch from rMITK MITK: feature/T29541-nnunet-update-doku.

Jun 12 2023, 11:09 AM · Checklist, MITK (v2023.04)

May 17 2023

kislinsk archived MITK (v2023.04).
May 17 2023, 2:51 PM
kislinsk closed T29600: MITK v2023.04 as Resolved.
May 17 2023, 2:48 PM · MITK-ProjectTemplate, MITK (v2023.04)
kislinsk added a comment to T29600: MITK v2023.04.

Deleted branch from rMPT MITK-ProjectTemplate: release/T29600-v2023.04.

May 17 2023, 2:22 PM · MITK-ProjectTemplate, MITK (v2023.04)
kislinsk added a comment to T29600: MITK v2023.04.

Deleted branch from rMITK MITK: release/T29600-v2023.04.

May 17 2023, 2:18 PM · MITK-ProjectTemplate, MITK (v2023.04)

May 16 2023

kislinsk added a comment to T29600: MITK v2023.04.

Pushed new branch to rMPT MITK-ProjectTemplate: release/T29600-v2023.04.

May 16 2023, 10:22 PM · MITK-ProjectTemplate, MITK (v2023.04)
kislinsk added a project to T29600: MITK v2023.04: MITK-ProjectTemplate.
May 16 2023, 10:22 PM · MITK-ProjectTemplate, MITK (v2023.04)
kislinsk added a comment to T29600: MITK v2023.04.

Pushed new branch to rMITK MITK: release/T29600-v2023.04.

May 16 2023, 10:13 PM · MITK-ProjectTemplate, MITK (v2023.04)
kislinsk closed T29522: Write user guide and file format specification of Segmentation Task Lists as Resolved.
May 16 2023, 11:26 AM · MITK (v2023.04)
kislinsk closed T29522: Write user guide and file format specification of Segmentation Task Lists, a subtask of T29157: NCT ISSO Annotation Support with MITK Segmentation Flow, as Resolved.
May 16 2023, 11:26 AM · MITK (v2023.10)
kislinsk added a comment to T29522: Write user guide and file format specification of Segmentation Task Lists.

Deleted branch from rMITK MITK: feature/T29522-SegmentationTaskListUserGuide.

May 16 2023, 11:26 AM · MITK (v2023.04)
kislinsk added a comment to T29522: Write user guide and file format specification of Segmentation Task Lists.

Pushed new branch to rMITK MITK: feature/T29522-SegmentationTaskListUserGuide.

May 16 2023, 11:24 AM · MITK (v2023.04)

May 15 2023

floca added a comment to T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds.

I can now tell at least why you can paint into other windows.

May 15 2023, 8:56 PM · MITK (v2023.10), Checklist
kislinsk closed T29601: [Segmentation] Revise Segmentation View user guide as Resolved by committing rMITK9b76b183ed6e: Improve Segmentation user guide regarding label classes and instances.
May 15 2023, 8:51 PM · MITK (v2023.04)
a178n closed T29566: TotalSegmentator GUI bug: Install button not Activated correctly as Resolved.
May 15 2023, 7:11 PM · Checklist, MITK (v2023.04)
a178n closed T29566: TotalSegmentator GUI bug: Install button not Activated correctly, a subtask of T29437: [SEG] Add TotalSegmentator, as Resolved.
May 15 2023, 7:11 PM · MITK
a178n added a revision to T29567: TotalSeg: inferencing issue on MacOS: Restricted Differential Revision.
May 15 2023, 12:07 AM · MITK (v2023.10)

May 14 2023

a178n added a comment to T29567: TotalSeg: inferencing issue on MacOS.

Pushed new branch to rMITK MITK: feature/T29567-totalseg-macos-fix.

May 14 2023, 11:12 PM · MITK (v2023.10)
a178n closed T29541: nnUNet tool Update documentation as Resolved.

D831 fixed this. Hence closing.

May 14 2023, 11:10 PM · Checklist, MITK (v2023.04)
a178n added a revision to T29566: TotalSegmentator GUI bug: Install button not Activated correctly: Restricted Differential Revision.
May 14 2023, 8:59 PM · Checklist, MITK (v2023.04)
a178n added a comment to T29567: TotalSeg: inferencing issue on MacOS.

Status: Issue is fixed. I tested it on macOS with python 3.9 & it works. However, it's not yet on pypi. Until the changes are on pypi, MITK won't benefit from the fix. MITK pip installs TotalSegmentator.

May 14 2023, 8:52 PM · MITK (v2023.10)

May 13 2023

floca closed T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups as Resolved by committing rMITK474310366223: Fixed error and underlying problem (label set cloning is not correct).
May 13 2023, 6:07 PM · Checklist, MITK (v2023.04)

May 12 2023

kislinsk closed T29585: [MxN] Loading layout needs .json file ending as Resolved.
May 12 2023, 5:44 PM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved.

Deleted branch from rMITK MITK: bugfix/T29573-FixEmptyGroupCrashes.

May 12 2023, 11:38 AM · Checklist, MITK (v2023.04)
kislinsk closed T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved as Resolved by committing rMITK41d11b884ad5: [Segmentation/IO] Fix several crashes with empty groups.
May 12 2023, 11:38 AM · Checklist, MITK (v2023.04)
kislinsk closed T29602: [Segmentation] Tools crash on empty segmentations as Resolved by committing rMITK1dd5c937dd5a: Disable segmentation tools if segmentation is empty.
May 12 2023, 9:35 AM · MITK (v2023.04)

May 11 2023

kislinsk added a revision to T29602: [Segmentation] Tools crash on empty segmentations: Restricted Differential Revision.
May 11 2023, 5:20 PM · MITK (v2023.04)
floca closed T29575: [Segmentation] Threshold tool crashes when new label is created during preview as Resolved by committing rMITK1d634abd525d: Fix crash in binary threshold tools.
May 11 2023, 4:36 PM · Request for Discussion, Checklist, MITK (v2023.04)
s434n closed T29492: [mxn multi widget] Update and extend checklist as Resolved.
May 11 2023, 3:17 PM · MITK (v2023.04)
a178n added a comment to T29566: TotalSegmentator GUI bug: Install button not Activated correctly.

Pushed new branch to rMITK MITK: feature/T29566-totalseg-checklist-bugfix.

May 11 2023, 2:06 PM · Checklist, MITK (v2023.04)
kislinsk moved T29602: [Segmentation] Tools crash on empty segmentations from Backlog to Cycle on the MITK (v2023.04) board.
May 11 2023, 1:13 PM · MITK (v2023.04)
kislinsk triaged T29602: [Segmentation] Tools crash on empty segmentations as High priority.
May 11 2023, 1:12 PM · MITK (v2023.04)
kislinsk added a revision to T29601: [Segmentation] Revise Segmentation View user guide: Restricted Differential Revision.
May 11 2023, 12:34 PM · MITK (v2023.04)
kislinsk moved T29601: [Segmentation] Revise Segmentation View user guide from Backlog to Cycle on the MITK (v2023.04) board.
May 11 2023, 12:32 PM · MITK (v2023.04)
kislinsk renamed T29601: [Segmentation] Revise Segmentation View user guide from Revise Segmentation View user guide to [Segmentation] Revise Segmentation View user guide.
May 11 2023, 12:32 PM · MITK (v2023.04)
kislinsk triaged T29601: [Segmentation] Revise Segmentation View user guide as Normal priority.
May 11 2023, 12:32 PM · MITK (v2023.04)
kislinsk triaged T29600: MITK v2023.04 as Normal priority.
May 11 2023, 11:40 AM · MITK-ProjectTemplate, MITK (v2023.04)
s434n added a revision to T29585: [MxN] Loading layout needs .json file ending: Restricted Differential Revision.
May 11 2023, 11:03 AM · Checklist, MITK (v2023.04)
kislinsk reassigned T29575: [Segmentation] Threshold tool crashes when new label is created during preview from kislinsk to floca.

@floca wants to resolve these crashes differently. Handing over...

May 11 2023, 10:58 AM · Request for Discussion, Checklist, MITK (v2023.04)
kislinsk closed T29598: [Movie Maker] Fix crash on Linux when recording video as Resolved.
May 11 2023, 10:54 AM · MITK (v2023.04)
kislinsk added a comment to T29598: [Movie Maker] Fix crash on Linux when recording video.

Deleted branch from rMITK MITK: bugfix/T29598-FixCrashInMovieMaker.

May 11 2023, 10:54 AM · MITK (v2023.04)
kislinsk added a comment to T29598: [Movie Maker] Fix crash on Linux when recording video.

Pushed new branch to rMITK MITK: bugfix/T29598-FixCrashInMovieMaker.

May 11 2023, 10:52 AM · MITK (v2023.04)
kislinsk triaged T29598: [Movie Maker] Fix crash on Linux when recording video as High priority.
May 11 2023, 10:49 AM · MITK (v2023.04)
a178n added a comment to T29541: nnUNet tool Update documentation.

Pushed new branch to rMITK MITK: feature/T29541-nnunet-update-doku.

May 11 2023, 10:05 AM · Checklist, MITK (v2023.04)
a178n added a comment to T29130: [WorkBench] Segmentation fault when "Close Project" is invoked and QmitkDataStorageComboBox widget is in UI.

Deleted branch from rMITK MITK: feature/T29130-nnunet-widget-change.

May 11 2023, 9:52 AM · MITK (v2023.10)
a178n added a comment to T29457: Introduce basic TotalSegmentator tool in Workbench.

Deleted branch from rMITK MITK: feature/T29457-totalsegmentator-basic.

May 11 2023, 9:51 AM · MITK (v2023.04)
a178n added a comment to T29458: Include Advanced settings support for TotalSegmentator tool in MITK.

Deleted branch from rMITK MITK: feature/T29458-totalsegmentator-advanced.

May 11 2023, 9:50 AM · MITK (v2023.04)
a178n added a comment to T29463: Doxygen documentation for TotalSegmentator.

Deleted branch from rMITK MITK: feature/T29463-totalsegmentator-doku.

May 11 2023, 9:50 AM · MITK (v2023.04)
a178n added a comment to T29468: Let MITK handle TotalSegmentator setup.

Deleted branch from rMITK MITK: feature/T29468-totalsegmentator-install.

May 11 2023, 9:50 AM · MITK (v2023.04)
a178n added a comment to T29527: Change temp directory name.

Deleted branch from rMITK MITK: feature/T29527-nnunet-minor-change.

May 11 2023, 9:49 AM · MITK (v2023.04)
a178n added a comment to T29528: [Segmentation] nnUNet provokes error when closing MITK / Segmentation view.

Deleted branch from rMITK MITK: feature/T29528-nnunet-bugfixes.

May 11 2023, 9:48 AM · MITK (v2023.04)
a178n added a comment to T29463: Doxygen documentation for TotalSegmentator.

Deleted branch from rMITK MITK: feature/T29463-totalsegmentator-doku-full.

May 11 2023, 9:47 AM · MITK (v2023.04)
a178n added a comment to T29558: TotalSegmentator: Modify as per new Segmentation changes.

Deleted branch from rMITK MITK: feature/T29558-totalseg-update.

May 11 2023, 9:46 AM · MITK (v2023.04)

May 10 2023

floca added a revision to T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups: Restricted Differential Revision.
May 10 2023, 4:14 PM · Checklist, MITK (v2023.04)
kislinsk added a revision to T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved: Restricted Differential Revision.
May 10 2023, 3:03 PM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved.

EmptyGroups.mitk3 MBDownload

May 10 2023, 3:01 PM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved.

Pushed new branch to rMITK MITK: bugfix/T29573-FixEmptyGroupCrashes.

May 10 2023, 2:54 PM · Checklist, MITK (v2023.04)
kislinsk claimed T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved.
May 10 2023, 11:04 AM · Checklist, MITK (v2023.04)
kislinsk added a project to T29566: TotalSegmentator GUI bug: Install button not Activated correctly: Checklist.
May 10 2023, 10:56 AM · Checklist, MITK (v2023.04)
kislinsk triaged T29596: Move out FAST checkbox from Advanced as Normal priority.
May 10 2023, 10:53 AM · Request for Discussion, MITK (v2023.10), Checklist
kislinsk assigned T29541: nnUNet tool Update documentation to a178n.
May 10 2023, 10:52 AM · Checklist, MITK (v2023.04)
kislinsk moved T29541: nnUNet tool Update documentation from Backlog to Cycle on the MITK (v2023.04) board.
May 10 2023, 10:52 AM · Checklist, MITK (v2023.04)
kislinsk removed a project from T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups: Missing Info.
May 10 2023, 10:43 AM · Checklist, MITK (v2023.04)
kislinsk moved T29575: [Segmentation] Threshold tool crashes when new label is created during preview from Backlog to MITK Meeting on the Request for Discussion board.
May 10 2023, 9:29 AM · Request for Discussion, Checklist, MITK (v2023.04)
kislinsk added a project to T29575: [Segmentation] Threshold tool crashes when new label is created during preview: Request for Discussion.

Request for Discussion:

  • Notify tools about selected label changes or label property changes like color?
  • Show preview as active or inactive label (with or without border)?
May 10 2023, 9:29 AM · Request for Discussion, Checklist, MITK (v2023.04)

May 9 2023

floca closed T29572: [SEG] Tool interaction does not work on multi montor setup with different dpi, a subtask of T29375: Cursor offset in 2D tools with Qt 5.15 on macOS, as Resolved.
May 9 2023, 9:09 PM · MITK (v2023.04)
floca closed T29572: [SEG] Tool interaction does not work on multi montor setup with different dpi as Resolved by committing rMITK7bf47cc93339: Fixed T29572.
May 9 2023, 9:09 PM · MITK (v2023.04)
a178n added a comment to T29567: TotalSeg: inferencing issue on MacOS.

Issue opened on Github: https://github.com/wasserth/TotalSegmentator/issues/119

May 9 2023, 6:07 PM · MITK (v2023.10)
s434n triaged T29585: [MxN] Loading layout needs .json file ending as Normal priority.
May 9 2023, 4:27 PM · Checklist, MITK (v2023.04)
s434n moved T29585: [MxN] Loading layout needs .json file ending from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 4:27 PM · Checklist, MITK (v2023.04)
s434n claimed T29585: [MxN] Loading layout needs .json file ending.
May 9 2023, 3:46 PM · Checklist, MITK (v2023.04)
s434n closed T29587: [MxN] Resetting render window to specific image always fills visible area with highest image in Data Manager as Invalid.

This is behavior as intended. The "reset" is basically a reinit to the specified image. When there is an image higher in the list, it is rendered on top, just as in the standard display and the data manager.
I have added a hint in the checklist to make it clear this is how it is supposed to work.

May 9 2023, 3:46 PM · Checklist, MITK (v2023.04)
kislinsk placed T29460: [SEG] Higlight unlabeld pixels up for grabs.
May 9 2023, 12:30 PM · MITK (v2023.10)
kislinsk placed T29487: Tool Icon for TotalSegmentator up for grabs.
May 9 2023, 12:29 PM · MITK (v2023.10)
kislinsk added a comment to T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI.

Deleted branch from rMITK MITK: bugfix/T29589-FixQtIncompatibility.

May 9 2023, 12:27 PM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI.

Pushed new branch to rMITK MITK: bugfix/T29589-FixQtIncompatibility.

May 9 2023, 12:22 PM · Checklist, MITK (v2023.04)
kislinsk added a revision to T29575: [Segmentation] Threshold tool crashes when new label is created during preview: Restricted Differential Revision.
May 9 2023, 11:57 AM · Request for Discussion, Checklist, MITK (v2023.04)
kislinsk added a comment to T29575: [Segmentation] Threshold tool crashes when new label is created during preview.

Seems to be related to

May 9 2023, 10:52 AM · Request for Discussion, Checklist, MITK (v2023.04)
a178n triaged T29597: TotalSeg didn't remember python environment as Normal priority.
May 9 2023, 10:35 AM · MITK (v2023.10), Checklist
kislinsk claimed T29575: [Segmentation] Threshold tool crashes when new label is created during preview.
May 9 2023, 10:23 AM · Request for Discussion, Checklist, MITK (v2023.04)
a178n created T29596: Move out FAST checkbox from Advanced.
May 9 2023, 10:22 AM · Request for Discussion, MITK (v2023.10), Checklist
a178n edited projects for T29569: [Checklist] Update TotalSegmentator & nnUNet checklist, added: MITK (v2023.04); removed MITK.
May 9 2023, 10:16 AM · MITK (v2023.10), Checklist
a178n triaged T29595: Make nnUNet folder parsing more resilient to stray folders as Normal priority.
May 9 2023, 10:08 AM · MITK (v2023.10), Request for Discussion, Checklist
a178n raised the priority of T29541: nnUNet tool Update documentation from Normal to Unbreak Now!.
May 9 2023, 10:02 AM · Checklist, MITK (v2023.04)
a178n triaged T29594: Improve MITK help text for nnUNet tool as Normal priority.
May 9 2023, 10:01 AM · MITK (v2023.10), Checklist, Request for Discussion
kislinsk closed T29571: [Segmentation] Changing groups on loaded multi-group segmentations crash as Resolved by committing rMITK69c105b655f8: Fix crash when switching groups on loaded multi-group segmentations.
May 9 2023, 10:00 AM · Checklist, MITK (v2023.04)
kislinsk closed T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI as Resolved.
May 9 2023, 9:59 AM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI.

Deleted branch from rMITK MITK: bugfix/T29589-SyncGUIToAddOrSubtractMode.

May 9 2023, 9:59 AM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI.

Pushed new branch to rMITK MITK: bugfix/T29589-SyncGUIToAddOrSubtractMode.

May 9 2023, 9:56 AM · Checklist, MITK (v2023.04)
floca claimed T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups.
May 9 2023, 9:42 AM · Checklist, MITK (v2023.04)
floca added a comment to T29590: [Segmentation] [Erase] Erasing everything of the selected label when clicking on background is surprising.

See the point and would agree. But I am biased as I never liked the feature ;).

May 9 2023, 9:41 AM · MITK (v2023.10), Checklist
floca raised the priority of T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups from Normal to Unbreak Now!.

Important as long as we do not know if it hints to a more fundamental underlying problem.

May 9 2023, 9:33 AM · Checklist, MITK (v2023.04)
floca moved T29575: [Segmentation] Threshold tool crashes when new label is created during preview from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 9:30 AM · Request for Discussion, Checklist, MITK (v2023.04)
floca triaged T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved as High priority.
May 9 2023, 9:30 AM · Checklist, MITK (v2023.04)
floca moved T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 9:29 AM · Checklist, MITK (v2023.04)
floca moved T29566: TotalSegmentator GUI bug: Install button not Activated correctly from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 9:29 AM · Checklist, MITK (v2023.04)
floca moved T29567: TotalSeg: inferencing issue on MacOS from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 9:29 AM · MITK (v2023.10)
floca moved T29571: [Segmentation] Changing groups on loaded multi-group segmentations crash from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 9:29 AM · Checklist, MITK (v2023.04)
floca moved T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 9:29 AM · MITK (v2023.10), Checklist
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