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Jan 26 2021

eisenman closed T27867: report corrections as Resolved.

Jan 26 2021, 4:22 PM · challengeR (v1.0)

eisenman edited projects for T27867: report corrections, added: challengeR (v1.0); removed challengeR.

Jan 26 2021, 4:22 PM · challengeR (v1.0)

eisenman closed T27832: Complete troublshooting as Resolved.

Jan 26 2021, 4:21 PM · challengeR (v1.0)

eisenman edited projects for T27832: Complete troublshooting, added: challengeR (v1.0); removed challengeR.

Jan 26 2021, 4:21 PM · challengeR (v1.0)

Dec 20 2020

eisenman closed T28125: challangeR Release v1.0.0 as Resolved.

Dec 20 2020, 9:34 PM · challengeR (v1.0)

eisenman moved T28125: challangeR Release v1.0.0 from In Progress to Done on the challengeR (v1.0) board.

Dec 20 2020, 9:34 PM · challengeR (v1.0)

eisenman closed T27396: Represent single-task challenge as multi-task challenge with one task as Resolved.

Dec 20 2020, 9:34 PM · challengeR (v1.0)

eisenman closed T27325: Plot titles in rankingHeatmap missing in multi task report as Resolved.

Dec 20 2020, 9:34 PM · challengeR (v1.0)

eisenman closed T27404: Fix the 2.1 section title format of the report as Resolved.

Dec 20 2020, 9:34 PM · challengeR (v1.0)

eisenman closed T27408: Description of cluster analysis contains unnecessary symbol as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27410: Correct description of variability of achieved rankings across tasks as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27281: Implement tests for ranking method "rank-then-aggregate" as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27412: Description of variability of achieved rankings across tasks is missing in short report as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27316: Aggregate-than-rank does not throw an error when an invalid NA treatment option is specified as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27302: Add sections to the readme as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27237: Implement tests for ranking method "aggregate-then-rank" as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27301: Add on boarding tutorial as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27244: Implement tests for the "challenge" class as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27236: Set up test infrastructure as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27407: Warnings are shown in multi-task challenge report for violin plot as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27656: make sure data set is data.frame as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27411: Improve labels in cluster dendrogram as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27327: warning in docx report as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27449: Consistent handling of plots created for multi-task data sets as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27287: is warning given if na.treat unspecified in rank-first and obligatory otherwise as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27694: Fix failing unit tests as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27253: Notify user when multi-task data set is interpreted as single-task data set as Resolved.

Dec 20 2020, 9:31 PM · challengeR (v1.0)

eisenman closed T27385: Variables holding the aggregated value are named differently for single- and multi-task challenges as Resolved.

Dec 20 2020, 9:31 PM · challengeR (v1.0)

eisenman closed T27657: When missing algorithm performances are added as NAs, task is also NA as Resolved.

Dec 20 2020, 9:31 PM · challengeR (v1.0)

eisenman closed T27715: Specify minimum required versions of dependencies as Resolved.

Dec 20 2020, 9:31 PM · challengeR (v1.0)

eisenman closed T27252: Multiple cases per algorithm are not detected when missing data was added before as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27740: Add missing imports as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27658: LaTeX Warning: There were undefined references as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27475: Legend of blob plot has missing legend title and algorithms as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27474: Legend of line plot has missing legend title and algorithm as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27677: Update text in reports (feedback from Lena) as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27769: Top x performing algorithms are not mentioned in the reports anymore as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27338: Report contains misleading information on missing values as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27773: package dependencies as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27294: add multiple figure output formats in report with option clean=TRUE as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27337: Report contains wrong ranking method when rank-then-aggregate is used as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27452: Provide plot function for dendrogram as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27714: Report contains weird R output as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27453: Create complete network plot in its function as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27776: Failing unit tests for subset of tasks as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27685: changes in subset() as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27777: Failing unit tests for challenge as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27774: wrong text in report on algorithm subsets as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27447: significanceMap function raises warning about deprecated function call as Resolved.

Dec 20 2020, 9:27 PM · challengeR (v1.0)

eisenman closed T27770: Inconsistency in report description as Resolved.

Dec 20 2020, 9:27 PM · challengeR (v1.0)

eisenman closed T27282: Implement tests for ranking method "test-then-rank" based on Wilcoxon signed rank test as Resolved.

Dec 20 2020, 9:27 PM · challengeR (v1.0)

eisenman closed T27686: tutorial can be added as vignette to embed it in the package as Resolved.

Dec 20 2020, 9:27 PM · challengeR (v1.0)

eisenman closed T27450: Consistent use of attribute indicating whether small metric values lead to a better rank as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27804: Message text from violin plot is cut off in the PDF report as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27793: Plot titles are missing in some line plots as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27778: turn off networks as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27456: Extraction of task subset from (bootstrap) ranking does not raise an error for invalid task name as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27794: Stacked frequency plots should switch to single page layout as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27802: Revise signature of function testThenRank as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27922: Remove network plot from report overview as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27278: Writing documentation for main functions as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27929: Provide documentation for plot functions as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27930: Revise examples given in the vignettes as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27996: Restructure troubleshooting section as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27420: report text as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T28055: respect color scheme also for box plots as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T28033: +scale_* seems to not work in combination with ggList objects as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27963: Task names printed as R output in Sec. 3.1 of multi-task report as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27360: compatibility with R4.0.0 as Resolved.

Also successfully checked for Ubuntu 18.04 and R version 4.0.3.

Dec 20 2020, 9:24 PM · challengeR (v1.0)

eisenman closed T27707: na.treat obligatory for report as Resolved.

Dec 20 2020, 9:23 PM · challengeR (v1.0)

eisenman closed T27241: Readme improvements as Resolved.

Dec 20 2020, 9:23 PM · challengeR (v1.0)

eisenman closed T27915: Podium plot shrinks for long algorithm names as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27748: Decide on limit for algorithms in plot legends as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27943: Plot function stability() raises error when used with default values as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T28085: Report generation is broken as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27971: Provide code for podium plot in vignette "Visualizations" as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27292: Fix toolkit authors as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T28112: colors in box plots multitask not consistent as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27291: update license file as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27998: Interpretation of consensus ranking values needs further explanation as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman closed T28119: Unit tests are failing on Ubuntu due to mismatching messages as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman closed T28097: test errors in aggregateThenRank and rankThenAggregate as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman closed T28123: Add notes for Linux users to readme as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman closed T28120: Write release notes for challengeR v1.0 as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman moved T28125: challangeR Release v1.0.0 from Backlog to In Progress on the challengeR (v1.0) board.

Dec 20 2020, 8:29 PM · challengeR (v1.0)

eisenman moved T28120: Write release notes for challengeR v1.0 from In Progress to Done on the challengeR (v1.0) board.

Dec 20 2020, 8:27 PM · challengeR (v1.0)

eisenman closed T28121: Remove parallel bootstrapping from quick-start scripts as Wontfix.

Dec 20 2020, 8:26 PM · challengeR (v1.0)

eisenman triaged T28125: challangeR Release v1.0.0 as High priority.

Dec 20 2020, 8:26 PM · challengeR (v1.0)

eisenman closed T28122: Fix layout of logos at the end of the readme file as Resolved.

Dec 20 2020, 8:20 PM · challengeR (v1.0)

Dec 18 2020

eisenman added a comment to T28120: Write release notes for challengeR v1.0.

Changes:

Revision of the underlying data structure
Roxygen documentation for main functionality
Vignettes for quickstart and overview of available plots demonstrating the use of their corresponding plot functions
Introduction of unit tests (package coverage >70%)
Troubleshooting section covering potential issues during setup
Finally: Extensive bug fixes and improvements (for a complete overview please check the Phabricator tasks)

Dec 18 2020, 12:22 PM · challengeR (v1.0)

eisenman moved T28120: Write release notes for challengeR v1.0 from Backlog to In Progress on the challengeR (v1.0) board.

Dec 18 2020, 12:01 PM · challengeR (v1.0)

eisenman moved T28122: Fix layout of logos at the end of the readme file from In Progress to Done on the challengeR (v1.0) board.

Dec 18 2020, 10:35 AM · challengeR (v1.0)

eisenman moved T28122: Fix layout of logos at the end of the readme file from Backlog to In Progress on the challengeR (v1.0) board.

Dec 18 2020, 10:15 AM · challengeR (v1.0)

eisenman moved T28123: Add notes for Linux users to readme from In Progress to Done on the challengeR (v1.0) board.

Dec 18 2020, 10:15 AM · challengeR (v1.0)

eisenman moved T28123: Add notes for Linux users to readme from Backlog to In Progress on the challengeR (v1.0) board.

Dec 18 2020, 9:26 AM · challengeR (v1.0)

Dec 17 2020

eisenman created T28123: Add notes for Linux users to readme.

Dec 17 2020, 6:46 PM · challengeR (v1.0)

eisenman moved T28097: test errors in aggregateThenRank and rankThenAggregate from In Progress to Done on the challengeR (v1.0) board.

Dec 17 2020, 6:38 PM · challengeR (v1.0)

eisenman claimed T28097: test errors in aggregateThenRank and rankThenAggregate.

Dec 17 2020, 6:05 PM · challengeR (v1.0)

eisenman moved T28097: test errors in aggregateThenRank and rankThenAggregate from Backlog to In Progress on the challengeR (v1.0) board.

Dec 17 2020, 6:03 PM · challengeR (v1.0)

eisenman moved T28119: Unit tests are failing on Ubuntu due to mismatching messages from In Progress to Done on the challengeR (v1.0) board.

Dec 17 2020, 6:03 PM · challengeR (v1.0)