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Thu, Apr 18

floca closed T28525: Design refactoring of LabelSetImage and associated classes, a subtask of T28524: Refactor LabelSetImage and associated classes., as Resolved.
Thu, Apr 18, 4:37 PM · Next Milestone
floca closed T28525: Design refactoring of LabelSetImage and associated classes as Resolved.
Thu, Apr 18, 4:37 PM · Next Milestone

Mar 20 2024

s434n triaged T30379: [Volume Visualization] Create generic initialization as Low priority.
Mar 20 2024, 1:48 PM · Next Milestone, MITK
a178n edited projects for T29557: [Segmentation] "Delete group" button is inactive if there are multiple groups but no labels, added: MITK, Next Milestone; removed Request for Discussion, MITK (v2024.06).

Discussion result - Evaluate if in case of no selection (no labels), the highlight is enough to indicate a "selected group".

Mar 20 2024, 11:43 AM · Next Milestone, MITK
a178n removed a project from T30375: [Statistics] Remove HotspotMaskGenerator or rework and fix tests: Request for Discussion.

Discussion result - Decided on (a)

Mar 20 2024, 11:33 AM · Next Milestone, MITK

Mar 19 2024

floca triaged T30375: [Statistics] Remove HotspotMaskGenerator or rework and fix tests as High priority.
Mar 19 2024, 8:50 AM · Next Milestone, MITK

Mar 18 2024

floca added a project to T30372: [Statistics] Replace secondary mask in mitk::ImageStatisticsGenerator by an "AndMaskGenerator": Breaking Change.
Mar 18 2024, 5:42 PM · Breaking Change, Next Milestone, MITK

Mar 15 2024

floca triaged T30372: [Statistics] Replace secondary mask in mitk::ImageStatisticsGenerator by an "AndMaskGenerator" as Normal priority.
Mar 15 2024, 9:31 AM · Breaking Change, Next Milestone, MITK

Mar 11 2024

floca closed T30294: {SEG] Remove label set structure, a subtask of T28524: Refactor LabelSetImage and associated classes., as Resolved.
Mar 11 2024, 10:50 AM · Next Milestone

Feb 22 2024

floca closed T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems, a subtask of T28525: Design refactoring of LabelSetImage and associated classes, as Resolved.
Feb 22 2024, 5:26 PM · Next Milestone

Dec 5 2023

floca triaged T30294: {SEG] Remove label set structure as High priority.
Dec 5 2023, 9:08 AM · Breaking Change, MITK (v2024.06)

Dec 4 2023

floca added a parent task for T30293: Introduce new interoperability/developer-friendly scene file format (including reader): Restricted Maniphest Task.
Dec 4 2023, 2:43 PM · MITK (v2024.06)
floca renamed T30293: Introduce new interoperability/developer-friendly scene file format (including reader) from Introduce new interoperability/developer-friendly scene file format to Introduce new interoperability/developer-friendly scene file format (including reader).
Dec 4 2023, 2:42 PM · MITK (v2024.06)
floca updated subscribers of T30293: Introduce new interoperability/developer-friendly scene file format (including reader).

@gaoh With that already help you? Especially the last option with in file property lists and modify mode?
I would like to keep it in XML for now because it’s much faster to realize as we do not have to change complete reader infrastructure.

Dec 4 2023, 2:39 PM · MITK (v2024.06)
floca triaged T30293: Introduce new interoperability/developer-friendly scene file format (including reader) as Normal priority.
Dec 4 2023, 2:37 PM · MITK (v2024.06)
floca closed T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem as Resolved.

@gaoh PLease feel free to reopen if there is still a problem.

Dec 4 2023, 2:22 PM · Next Milestone, Request for Discussion, MITK

Nov 29 2023

floca triaged T30286: Update to DCMQI 1.3.1 as Normal priority.
Nov 29 2023, 11:59 AM · MITK (v2024.06)
kislinsk added a comment to T30284: Control category/view toolbar visibility through preferences.

Turns out, eager plugins start too early to be of any use here (A). Regarding (B), preferences are already queried in the Workbench Window Advisors for the visibility of the category labels in tool bars, so it would be like two lines to get the preferences applied also at application startup, at the price of having to do it in each Workbench Window Advisor:

Nov 29 2023, 12:16 AM · MITK (v2024.06)

Nov 28 2023

kislinsk added a comment to T30284: Control category/view toolbar visibility through preferences.

Since it is already buried in the Diff by Jenkins comments, I paste it here as well:

Nov 28 2023, 10:07 PM · MITK (v2024.06)
kislinsk added a revision to T30284: Control category/view toolbar visibility through preferences: Restricted Differential Revision.
Nov 28 2023, 1:25 PM · MITK (v2024.06)
kislinsk added a comment to T30284: Control category/view toolbar visibility through preferences.

Pushed new branch to rMITK MITK: feature/T30284-ToolBarVisibilityThroughPreferences.

Nov 28 2023, 1:14 PM · MITK (v2024.06)
kislinsk triaged T30284: Control category/view toolbar visibility through preferences as Normal priority.
Nov 28 2023, 1:10 PM · MITK (v2024.06)
kislinsk triaged T30283: Make MITK Workbench more customizable for end-users as Normal priority.
Nov 28 2023, 12:59 PM · MITK (v2024.06)

Nov 20 2023

a178n renamed T30253: SAM tool: Installation could show error message for wrong python path from SAM tool: Installation can show error for wrong python path to SAM tool: Installation could show error message for wrong python path.
Nov 20 2023, 8:58 AM · MITK (v2024.06)

Nov 16 2023

a178n added a comment to T30253: SAM tool: Installation could show error message for wrong python path.

Pushed new branch to rMITK MITK: feature/T30253-sam-message-update.

Nov 16 2023, 1:27 PM · MITK (v2024.06)
a178n updated the task description for T30253: SAM tool: Installation could show error message for wrong python path.
Nov 16 2023, 11:27 AM · MITK (v2024.06)
a178n triaged T30253: SAM tool: Installation could show error message for wrong python path as Normal priority.
Nov 16 2023, 11:25 AM · MITK (v2024.06)

Nov 13 2023

a178n triaged T30247: MONAILabel: Improve doxygen docstrings as Normal priority.
Nov 13 2023, 10:07 AM · MITK (v2024.06)

Oct 11 2023

kislinsk lowered the priority of T30180: [Statistics] Median is approximated and completely off if sample size is small from Unbreak Now! to High.

Discussion result: Should be fixed with an exact calculation instead of an approximation based on histogram.

Oct 11 2023, 11:20 AM · MITK (v2024.06)

Sep 8 2023

floca triaged T30194: [SEG] Refactor LabelSetImage to MultiLabelSegmentation class as High priority.
Sep 8 2023, 12:15 PM · Next Milestone

Aug 1 2023

kislinsk added a comment to T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem.

I just did the Pic3D/brain test mentioned above and it works with v2023.04.

Aug 1 2023, 3:36 PM · Next Milestone, Request for Discussion, MITK
kislinsk triaged T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem as Normal priority.
Aug 1 2023, 3:11 PM · Next Milestone, Request for Discussion, MITK
kislinsk added a comment to T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem.

We could set up a test case to check if it is still an issue in the context of segmentation task lists. A segmentation task list with two tasks, one task referencing Pic3D.nrrd, the other task referencing the tilted brain.nrrd image. If this is working with the latest release it should be a proof that is not an issue anymore.

Aug 1 2023, 3:11 PM · Next Milestone, Request for Discussion, MITK

Jul 4 2023

floca closed T28139: [LabelSetImage] Ambigious meaning of "layer" in LabelSetImage, a subtask of T28525: Design refactoring of LabelSetImage and associated classes, as Resolved.
Jul 4 2023, 5:22 PM · Next Milestone

Jun 27 2023

floca updated subscribers of T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem.
In T29650#248947, @gaoh wrote:

@k656s has an example dataset. I am still at the release version before (I think 2022.10?) but I will update to the current release. Could this already help?

Yes, it could. I thought something like this was already introduced. @kislinsk, or?

Jun 27 2023, 5:46 PM · Next Milestone, Request for Discussion, MITK
gaoh updated subscribers of T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem.

@k656s has an example dataset. I am still at the release version before (I think 2022.10?) but I will update to the current release. Could this already help?
If not, I would vote for the task list view reinit after loading opiton.

Jun 27 2023, 11:05 AM · Next Milestone, Request for Discussion, MITK

Jun 23 2023

floca added projects to T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem: Request for Discussion, Next Milestone.

@gaoh do you have example data to reproduce this situation. That would help to replicate it and search for the best solution.
Which version of MITK was it?

Jun 23 2023, 2:29 PM · Next Milestone, Request for Discussion, MITK

May 17 2023

kislinsk removed a project from T24729: GetPropertyKeys() in DataNode should also return propertyKeys of BaseData: Auto-closed.
May 17 2023, 6:00 PM · MITK (v2024.06)
floca edited projects for T28156: [Segmentation] Fix timestep / timepoint types, added: Next Milestone; removed Auto-closed.
May 17 2023, 5:19 PM · MITK (v2024.06)
floca reopened T24729: GetPropertyKeys() in DataNode should also return propertyKeys of BaseData as "Open".
May 17 2023, 5:13 PM · MITK (v2024.06)

May 16 2023

kislinsk edited projects for T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds, added: MITK, Next Milestone; removed MITK (v2023.04).

Option 2 seems not to be enough, since I still can paint in other windows, even though it makes a little difference at least. Also, while free drawing a segment, you can leave a window and place a control point outside of the image which leads to the crashes reported.

May 16 2023, 8:18 AM · MITK (v2023.12), Checklist

May 15 2023

a178n added a comment to T29604: SAM as 2D Tool in MITK- iteration 2.

Pushed new branch to rMITK MITK: feature/T29604-sam-tool-2.

May 15 2023, 7:49 PM · MITK (v2024.06)
a178n triaged T29604: SAM as 2D Tool in MITK- iteration 2 as Normal priority.
May 15 2023, 7:27 PM · MITK (v2024.06)
a178n claimed T29540: SAM as 2D tool in MITK.
May 15 2023, 7:24 PM · MITK (v2024.06)

May 12 2023

kislinsk closed T27693: Packaging Python does not work/is not implemented, a subtask of T27196: Rewrite packaging of MITK, as Invalid.
May 12 2023, 6:57 AM · MITK (v2024.06), Cleared

May 8 2023

floca closed T29474: [SEG] Remove exterior label, a subtask of T28524: Refactor LabelSetImage and associated classes., as Resolved.
May 8 2023, 9:52 AM · Next Milestone
floca closed T29474: [SEG] Remove exterior label as Resolved.
May 8 2023, 9:52 AM · Next Milestone

May 3 2023

floca edited projects for T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep, added: MITK, Next Milestone, Request for Discussion; removed MITK (v2023.04).

We should discuss if it is still worth it to get it back online after all this time and with the new tools.

May 3 2023, 3:51 PM · MITK (v2024.06)
floca edited projects for T28499: Refactor/rewrite RegionGrowing3D tool, added: MITK, Next Milestone; removed MITK (v2023.04).

We should discuss if we realy try to get region growing back online with all the other tools ...

May 3 2023, 3:48 PM · MITK (v2024.06)
kislinsk closed T29451: [SEG] Response labels all not displayed on Workbench, a subtask of T29295: MONAI Label App as auto-segmentation tool in MITK, as Resolved.
May 3 2023, 11:40 AM · MITK (v2024.06)
s434n placed T29504: Initialize QmitkSlicesInterpolator with render windows instead of slice navigation controllers up for grabs.

This task should be revised / kept in mind when reworking the interpolation in general

May 3 2023, 11:15 AM · MITK (v2024.06)
s434n edited projects for T29295: MONAI Label App as auto-segmentation tool in MITK, added: Next Milestone, MITK; removed MITK (v2023.04).
May 3 2023, 11:14 AM · MITK (v2024.06)
s434n placed T28491: [Segmentation] Slice interpolation 'confirm for all slices' sometimes crahes up for grabs.

This task should be revised / checked if the problem still exists when the interpolation controller has been reworked.

May 3 2023, 11:12 AM · MITK (v2023.12)
s434n placed T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps up for grabs.
May 3 2023, 11:07 AM · Breaking Change, MITK (v2024.06), Checklist

May 2 2023

kislinsk triaged T29553: Include label instances in label set presets as High priority.
May 2 2023, 10:27 AM · MITK (v2024.06)

Apr 26 2023

floca closed T29505: [SEG] New NRRD file formate for MultiLabelSegmentation + IO classes + introduction of legacy reader, a subtask of T29392: [SEG] Add dedicated writer to store multi-label images in nifti, as Resolved.
Apr 26 2023, 6:11 PM · MITK (v2024.06)

Apr 21 2023

kalali placed T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" up for grabs.

I pushed my local branch to remote for others to continue working on it. The related differential {D594} has been updated and will remain open.

Apr 21 2023, 8:52 PM · MITK (v2024.06), Checklist, Request for Discussion
s434n claimed T29302: Movie maker plugin does not work correctly with the new mxn multi widget.
Apr 21 2023, 1:46 PM · MITK (v2024.06)

Apr 5 2023

kislinsk triaged T29516: Develop a general/global concept for key sequences and shortcuts in the MitkWorkbench as Low priority.
Apr 5 2023, 11:18 AM · MITK (v2024.06)

Mar 28 2023

floca added a subtask for T29392: [SEG] Add dedicated writer to store multi-label images in nifti: T29505: [SEG] New NRRD file formate for MultiLabelSegmentation + IO classes + introduction of legacy reader.
Mar 28 2023, 8:56 AM · MITK (v2024.06)

Mar 24 2023

floca moved T29392: [SEG] Add dedicated writer to store multi-label images in nifti from Segmentation to Cycle on the MITK (v2023.04) board.
Mar 24 2023, 8:17 PM · MITK (v2024.06)
floca claimed T29392: [SEG] Add dedicated writer to store multi-label images in nifti.
Mar 24 2023, 8:16 PM · MITK (v2024.06)

Mar 22 2023

kalali updated the task description for T29493: RenderWindow management classes need to be revised / cleaned.
Mar 22 2023, 8:41 PM · MITK (v2024.06)

Mar 21 2023

floca added a parent task for T29392: [SEG] Add dedicated writer to store multi-label images in nifti: T29495: [SEG] Rework segmentation view UX.
Mar 21 2023, 8:52 AM · MITK (v2024.06)

Mar 20 2023

kalali updated the task description for T29493: RenderWindow management classes need to be revised / cleaned.
Mar 20 2023, 1:33 PM · MITK (v2024.06)

Mar 17 2023

kalali triaged T29493: RenderWindow management classes need to be revised / cleaned as Normal priority.
Mar 17 2023, 4:49 PM · MITK (v2024.06)

Mar 3 2023

floca triaged T29474: [SEG] Remove exterior label as Normal priority.
Mar 3 2023, 4:08 PM · Next Milestone

Feb 28 2023

kislinsk added a comment to T29317: Clean up DICOM Browser plugin.

From a first glimpse it really needs to be continued before merging. Can't make much sense right now out of mitk::StoreSCPLauncherBuilder in parallel to QmitkStoreSCPLauncher::Params. Have to take a closer look.

Feb 28 2023, 10:00 AM · MITK (v2024.06)
floca added a comment to T29317: Clean up DICOM Browser plugin.

Should we integrate that in develop? Or any reason to wait?

Feb 28 2023, 8:47 AM · MITK (v2024.06)

Dec 22 2022

kislinsk added a comment to T24398: Dicom plugin: Retrieve does not work.

Have you pushed your clean ups? Not that your efforts get lost. 😉

Dec 22 2022, 12:17 PM · MITK (v2024.06)

Dec 19 2022

floca added a comment to T24398: Dicom plugin: Retrieve does not work.

Our side or also the CTK part.

Hm, lets put it as known issue and discuss its priority when we plan the spring release.

Only looked into our side so far. I'll create a separate task and push my clean-up that I already did so far.

Dec 19 2022, 10:43 AM · MITK (v2024.06)

Dec 12 2022

kislinsk triaged T29389: Python utility module as Normal priority.

A big leap into the Python direction would be to finally resolve T27923: Integrate possibility to execute Python Code in MITK , which is complete for a while now but we weren't able to figure out why it fails on Ubuntu build clients. Since the ITK v5 upgrade, we also need to adjust a little more I guess.

Dec 12 2022, 11:25 AM · MITK (v2024.06)

Nov 30 2022

floca moved T29392: [SEG] Add dedicated writer to store multi-label images in nifti from In candidates to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 11:29 AM · MITK (v2024.06)
kislinsk added a comment to T28585: The MITK-Tutorial Step 9 missing inheritence.

The plugin generator has been removed for now. Step 9 should be redesigned if the plugin generator was the blocker.

Nov 30 2022, 10:06 AM · MITK (v2024.06)
kalali closed T28108: [Release Checklists] Prepare release checklists as Resolved.
Nov 30 2022, 9:37 AM · MITK
kalali removed a subtask for T28108: [Release Checklists] Prepare release checklists: Restricted Maniphest Task.
Nov 30 2022, 9:37 AM · MITK
kalali removed a subtask for T28108: [Release Checklists] Prepare release checklists: Restricted Maniphest Task.
Nov 30 2022, 9:37 AM · MITK
kalali removed a subtask for T28108: [Release Checklists] Prepare release checklists: T26988: [Checklist] LevelWindow checklist does not provide explicit expected results for sufficient verification .
Nov 30 2022, 9:36 AM · MITK
kalali moved T29090: [3D Segmentation] Threshold tool preview draws contours in green and not in the active label color. from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 9:24 AM · MITK (v2024.06), Request for Discussion, Checklist
floca edited projects for T28776: Perfusion DataFit View: Inconsistencies in the signal conversion using the turboFLASH sequence , added: Next Milestone, MITK; removed MITK (v2023.04).
Nov 30 2022, 8:54 AM · MITK (v2024.06), Checklist
kislinsk closed T27701: Overhaul or remove PluginGenerator as Resolved.

Removed the last remnants of the plugin generator.

Nov 30 2022, 2:04 AM · MITK, Next Milestone
kislinsk added a comment to T27701: Overhaul or remove PluginGenerator.

Deleted branch from rMITK MITK: bugfix/T27701-RemovePluginGenerator.

Nov 30 2022, 2:03 AM · MITK, Next Milestone
kislinsk added a comment to T27701: Overhaul or remove PluginGenerator.

Pushed new branch to rMITK MITK: bugfix/T27701-RemovePluginGenerator.

Nov 30 2022, 2:00 AM · MITK, Next Milestone
kislinsk added a comment to T27701: Overhaul or remove PluginGenerator.

Deleted branch from rMITK MITK: bugfix/T27701-RemovePluginGenerator.

Nov 30 2022, 1:08 AM · MITK, Next Milestone

Nov 29 2022

kislinsk added a comment to T27701: Overhaul or remove PluginGenerator.

Pushed new branch to rMITK MITK: bugfix/T27701-RemovePluginGenerator.

Nov 29 2022, 10:10 PM · MITK, Next Milestone
s434n moved T29392: [SEG] Add dedicated writer to store multi-label images in nifti from Backlog to In candidates on the MITK (v2023.04) board.
Nov 29 2022, 1:44 PM · MITK (v2024.06)
s434n edited projects for T29392: [SEG] Add dedicated writer to store multi-label images in nifti, added: MITK (v2023.04); removed MITK.
Nov 29 2022, 1:44 PM · MITK (v2024.06)

Nov 25 2022

floca added a parent task for T25192: Enable DICOM SEG conversion for nrrd segmentations: T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM .
Nov 25 2022, 11:36 AM · MITK (v2024.06), MICO (Demo MICCAI 2018)
floca added a comment to T27189: REST API for data storage.

@gaoh Please help me out. what was the final status of Elisabth's work here? Totaly dropped off the radar.

Nov 25 2022, 11:27 AM · MITK (v2024.06), Restricted Project, Request for Discussion
floca added a parent task for T29389: Python utility module: T29390: How to ease the handling of external generated segmentations.
Nov 25 2022, 11:17 AM · MITK (v2024.06)

Nov 23 2022

kalali removed a parent task for T29392: [SEG] Add dedicated writer to store multi-label images in nifti: T29388: [Segmentation] Loading a nifti segmentation (nii) leads to a crash.
Nov 23 2022, 4:54 PM · MITK (v2024.06)

Nov 21 2022

kislinsk claimed T27701: Overhaul or remove PluginGenerator.
Nov 21 2022, 2:02 AM · MITK, Next Milestone

Nov 20 2022

Nils_Iseke added a comment to T27701: Overhaul or remove PluginGenerator.

Would be nice if a note is added to the documentation that the MitkPluginGenerator is currently not active. :)

Nov 20 2022, 9:09 AM · MITK, Next Milestone

Nov 18 2022

floca raised the priority of T29392: [SEG] Add dedicated writer to store multi-label images in nifti from Normal to High.
Nov 18 2022, 8:04 PM · MITK (v2024.06)
kalali added a parent task for T29335: [Segmentation] Show interactive warning for uninitialized render window geometry: T29402: [mxn multi widget] Concept for blocking individual render windows.
Nov 18 2022, 11:32 AM · MITK (v2023.04)

Nov 16 2022

kalali updated the task description for T29240: [mxn multi widget] Allow different time navigation controller for each individual render window.
Nov 16 2022, 3:51 PM · MITK (v2024.06)
kalali edited parent tasks for T29240: [mxn multi widget] Allow different time navigation controller for each individual render window, added: T29393: [mxn multi widget] Concept for individual render window synchronization; removed: T28578: [mxn multi widget] Optimization of the mxn multi widget.
Nov 16 2022, 3:49 PM · MITK (v2024.06)
floca moved T29389: Python utility module from Backlog to MITK Meeting on the Request for Discussion board.
Nov 16 2022, 11:00 AM · MITK (v2024.06)
floca moved T29381: Move Multilabel classes to Core module from Backlog to MITK Meeting on the Request for Discussion board.
Nov 16 2022, 10:59 AM · MITK, Request for Discussion
kalali moved T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" from MITK Meeting to Backlog on the Request for Discussion board.
Nov 16 2022, 8:39 AM · MITK (v2024.06), Checklist, Request for Discussion