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Apr 26 2022

floca closed T29135: Using Hyperopt with categorical parameters results in invalid best results as Resolved by committing rOBSHYPPOPYa698b0534296: Fixed T29135.
Apr 26 2022, 4:10 PM · Hyppopy

Apr 22 2022

floca renamed T29135: Using Hyperopt with categorical parameters results in invalid best results from When using Hyperopt withdoes not work properly with categorical parameters to Using Hyperopt with categorical parameters results in invalid best results.
Apr 22 2022, 12:05 PM · Hyppopy
floca created T29135: Using Hyperopt with categorical parameters results in invalid best results.
Apr 22 2022, 12:02 PM · Hyppopy

Dec 20 2021

kleina placed T28332: Support cascaded MPI processing up for grabs.

We did the draft together, but it was not implemented into Hyppopy yet.

Dec 20 2021, 3:00 PM · Hyppopy

Jun 7 2021

kleina moved T28300: [MPI] MPI as a general dependency might be problematic from In Progress to Bugfixes on the Hyppopy board.
Jun 7 2021, 3:08 PM · Request for Discussion, Hyppopy

May 10 2021

kleina added a comment to T28332: Support cascaded MPI processing.

Sure, here it is:
https://phabricator.mitk.org/rOBSHYPPOPYa340b927d14acdef69cea4e64b92524270066920

May 10 2021, 9:32 AM · Hyppopy

May 7 2021

floca added a comment to T28332: Support cascaded MPI processing.

I updated the draft in the branch directly (same file).

  • I did not change the send/recv to scatter/gather. In my opinion send/recv makes more sense, but we can discuss this.
  • In my opinion, we maybe don't need the "cleaning up" up the mpi_processes here, because it might be taken care of by our current implementation.

Let me know when you had time to look at it and if there are any questions. I'd like to discuss it a bit.

Could you point me to the commit? I cannot find it ?!?

May 7 2021, 9:41 PM · Hyppopy

Apr 22 2021

kleina closed T28410: MPISolverWrapper's direct call of blackbox internal seems wrong as Resolved by committing rOBSHYPPOPYace9c97f5ba3: Fixed MPISolverWrapper's direct call of blackbox internal.
Apr 22 2021, 10:08 AM · Hyppopy

Apr 21 2021

kleina reopened T28410: MPISolverWrapper's direct call of blackbox internal seems wrong as "Open".
Apr 21 2021, 4:12 PM · Hyppopy
kleina closed T28410: MPISolverWrapper's direct call of blackbox internal seems wrong as Resolved by committing rOBSHYPPOPYa2cfa7ce75ac: Fixed MPISolverWrapper's direct call of blackbox internal.
Apr 21 2021, 3:33 PM · Hyppopy
kleina added a project to T28300: [MPI] MPI as a general dependency might be problematic: Request for Discussion.
Apr 21 2021, 3:27 PM · Request for Discussion, Hyppopy
kleina moved T28376: Blackbox class - reorder the loss function call try from In Progress to Done on the Hyppopy board.
Apr 21 2021, 3:25 PM · Hyppopy
kleina moved T28298: Check for all print outputs in code base and convert them to log messages from In Progress to Done on the Hyppopy board.
Apr 21 2021, 3:25 PM · Hyppopy
kleina closed T28376: Blackbox class - reorder the loss function call try as Resolved by committing rOBSHYPPOPY5f8b57e426c0: Reordered the loss function call try..
Apr 21 2021, 3:25 PM · Hyppopy
kleina added a revision to T28376: Blackbox class - reorder the loss function call try: Restricted Differential Revision.
Apr 21 2021, 1:21 PM · Hyppopy
kleina removed a project from T28376: Blackbox class - reorder the loss function call try: Request for Discussion.
Apr 21 2021, 1:13 PM · Hyppopy
kleina moved T28410: MPISolverWrapper's direct call of blackbox internal seems wrong from In Progress to Done on the Hyppopy board.
Apr 21 2021, 1:12 PM · Hyppopy
kleina added a revision to T28410: MPISolverWrapper's direct call of blackbox internal seems wrong: Restricted Differential Revision.
Apr 21 2021, 1:10 PM · Hyppopy
floca added a comment to T28376: Blackbox class - reorder the loss function call try.

Thanks

Apr 21 2021, 12:19 PM · Hyppopy
kleina moved T28410: MPISolverWrapper's direct call of blackbox internal seems wrong from Done to In Progress on the Hyppopy board.
Apr 21 2021, 12:18 PM · Hyppopy
kleina added a comment to T28376: Blackbox class - reorder the loss function call try.

Your argument makes sense to me. I did not have a specific order in mind when implementing it, so I do not have any counterargument here.

Apr 21 2021, 12:17 PM · Hyppopy
kleina moved T28376: Blackbox class - reorder the loss function call try from Backlog to In Progress on the Hyppopy board.
Apr 21 2021, 12:15 PM · Hyppopy
kleina closed T28298: Check for all print outputs in code base and convert them to log messages as Resolved by committing rOBSHYPPOPY8c13e7810091: Converted "print" outputs to "log" outputs..
Apr 21 2021, 12:06 PM · Hyppopy
kleina added a revision to T28298: Check for all print outputs in code base and convert them to log messages: Restricted Differential Revision.
Apr 21 2021, 9:14 AM · Hyppopy
kleina reopened T28410: MPISolverWrapper's direct call of blackbox internal seems wrong as "Open".

Forgot something and didn't request review correctly. I will open this one agian.

Apr 21 2021, 8:33 AM · Hyppopy

Apr 19 2021

kleina moved T28332: Support cascaded MPI processing from In Progress to Testing/Evaluations on the Hyppopy board.
Apr 19 2021, 5:23 PM · Hyppopy

Apr 15 2021

kleina claimed T28332: Support cascaded MPI processing.

I updated the draft in the branch directly (same file).

Apr 15 2021, 5:02 PM · Hyppopy
kleina moved T28332: Support cascaded MPI processing from Backlog to In Progress on the Hyppopy board.
Apr 15 2021, 4:59 PM · Hyppopy

Apr 7 2021

kleina moved T28300: [MPI] MPI as a general dependency might be problematic from Backlog to In Progress on the Hyppopy board.
Apr 7 2021, 2:19 PM · Request for Discussion, Hyppopy
kleina moved T28410: MPISolverWrapper's direct call of blackbox internal seems wrong from In Progress to Done on the Hyppopy board.
Apr 7 2021, 2:19 PM · Hyppopy
kleina moved T26148: Integrate virtual energy function for evaluations tasks from In Progress to Done on the Hyppopy board.
Apr 7 2021, 2:19 PM · Hyppopy
kleina closed T28410: MPISolverWrapper's direct call of blackbox internal seems wrong as Resolved.

fixed in https://github.com/MIC-DKFZ/Hyppopy/tree/fix/T28410-direct-call-of-blackbox-internal

Apr 7 2021, 2:18 PM · Hyppopy
kleina added a comment to T28410: MPISolverWrapper's direct call of blackbox internal seems wrong.

I agree with the raised point. I checked the classes again and do not see a valid reason behind the blackbox_func call. I will fix this.

Apr 7 2021, 1:48 PM · Hyppopy
kleina claimed T28410: MPISolverWrapper's direct call of blackbox internal seems wrong.
Apr 7 2021, 1:43 PM · Hyppopy
kleina moved T28410: MPISolverWrapper's direct call of blackbox internal seems wrong from Backlog to In Progress on the Hyppopy board.
Apr 7 2021, 1:43 PM · Hyppopy
kleina added a project to T28410: MPISolverWrapper's direct call of blackbox internal seems wrong: Hyppopy.
Apr 7 2021, 1:43 PM · Hyppopy
kleina moved T28298: Check for all print outputs in code base and convert them to log messages from Backlog to In Progress on the Hyppopy board.
Apr 7 2021, 1:42 PM · Hyppopy
kleina claimed T28298: Check for all print outputs in code base and convert them to log messages.
Apr 7 2021, 1:41 PM · Hyppopy

Mar 15 2021

floca raised the priority of T26805: Make the MPI master work as well from Wishlist to Low.
Mar 15 2021, 11:38 PM · Hyppopy
floca changed the visibility for T26805: Make the MPI master work as well.
Mar 15 2021, 11:36 PM · Hyppopy
floca closed T28333: Allow auto wrapping of blackbox for MPI as Resolved.
Mar 15 2021, 11:33 PM · Hyppopy

Mar 13 2021

floca created T28376: Blackbox class - reorder the loss function call try.
Mar 13 2021, 10:33 AM · Hyppopy

Mar 8 2021

kleina moved T25982: add all hp space modalities loguniform, ... from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26086: Fix hard coded paths from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26146: restructure gridsearch to be memory safe from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26227: Own documentation section for hyper parameter aspects from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26226: Different style for frequency definition in the parameter space definition (for grid search and alike) from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26096: Add groups to hyperparameter dict structure from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26241: VirtualFunction should get better name from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26240: File headers are "strange" from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26242: Solvers exceptions due to missing hyper parameter configs should be more telling. from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:04 AM · Hyppopy
kleina moved T26243: Missing number of iterations is not handled if there is an incomplete config section from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:04 AM · Hyppopy
kleina moved T26325: Add code coverage for hyppopy from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:04 AM · Hyppopy

Feb 24 2021

floca reopened T28333: Allow auto wrapping of blackbox for MPI as "Open".
Feb 24 2021, 12:04 AM · Hyppopy
floca added a comment to T28333: Allow auto wrapping of blackbox for MPI.

@kleina can ou review the branch somewhen if the change is OK?

Feb 24 2021, 12:03 AM · Hyppopy
floca closed T28333: Allow auto wrapping of blackbox for MPI as Resolved by committing rOBSHYPPOPY75cdf9ddd63f: Fixed T28333.
Feb 24 2021, 12:03 AM · Hyppopy

Feb 23 2021

floca triaged T28333: Allow auto wrapping of blackbox for MPI as Normal priority.
Feb 23 2021, 11:48 PM · Hyppopy
floca triaged T28332: Support cascaded MPI processing as Normal priority.
Feb 23 2021, 11:41 PM · Hyppopy

Feb 11 2021

kleina added a comment to T28300: [MPI] MPI as a general dependency might be problematic.

That makes a lot of sense. I personally like the idea of a "optional dependency" better. I will have a look.

Feb 11 2021, 9:40 AM · Request for Discussion, Hyppopy

Feb 10 2021

floca triaged T28300: [MPI] MPI as a general dependency might be problematic as High priority.
Feb 10 2021, 10:21 PM · Request for Discussion, Hyppopy
floca triaged T28299: [MPI] mpi4py dependency breaks ReadTheDocs builds as Normal priority.
Feb 10 2021, 10:03 PM · Hyppopy
floca triaged T28298: Check for all print outputs in code base and convert them to log messages as Normal priority.
Feb 10 2021, 9:34 PM · Hyppopy

Sep 7 2020

kleina removed a parent task for T26805: Make the MPI master work as well: Unknown Object (Maniphest Task).
Sep 7 2020, 9:52 PM · Hyppopy

Sep 3 2020

floca created T27704: HyppopySolver: Setting default values unused #2.
Sep 3 2020, 8:55 PM · Hyppopy
floca placed T25960: Evaluate UseCase C (radiomics) up for grabs.
Sep 3 2020, 11:29 AM · Hyppopy
floca placed T25959: Evaluate UseCase B (registration) up for grabs.
Sep 3 2020, 11:29 AM · Hyppopy
floca placed T25958: Evaluate UseCase A (hippocampus data) up for grabs.
Sep 3 2020, 11:29 AM · Hyppopy

Jan 16 2020

floca triaged T26239: BlackboxFunction custom parameters in own "bucket" and not in "params" as Normal priority.
Jan 16 2020, 3:18 PM · Hyppopy

Nov 11 2019

kleina triaged T26805: Make the MPI master work as well as Wishlist priority.
Nov 11 2019, 10:56 AM · Hyppopy

May 22 2019

floca triaged T26345: Number Shift in the resulting Dataframe as Normal priority.
May 22 2019, 9:15 PM · Hyppopy

May 11 2019

floca triaged T26326: CI for hyppopy as Normal priority.
May 11 2019, 6:09 PM · Hyppopy
floca closed T26325: Add code coverage for hyppopy as Resolved by committing rOBSHYPPOPY28b51f16932d: Fixed T26325.
May 11 2019, 6:05 PM · Hyppopy
floca added a comment to T26325: Add code coverage for hyppopy.

Code coverage can be checked now.
And everything is setup up to use it with codecov.io

May 11 2019, 6:02 PM · Hyppopy
floca renamed T26325: Add code coverage for hyppopy from Add codecov for hyppopy to Add code coverage for hyppopy.
May 11 2019, 5:56 PM · Hyppopy
floca created T26325: Add code coverage for hyppopy.
May 11 2019, 12:16 PM · Hyppopy

May 9 2019

s635r triaged T26319: Add randomness to QuasirandomSolver as Low priority.
May 9 2019, 5:10 PM · Hyppopy
s635r triaged T26322: Improve VisdomViewer Visualization as Low priority.
May 9 2019, 5:09 PM · Hyppopy
s635r triaged T26321: Searchspace Reconstruction as Low priority.
May 9 2019, 5:07 PM · Hyppopy

May 8 2019

s635r renamed T26319: Add randomness to QuasirandomSolver from Improve QuasirandomSolver to Add randomness to QuasirandomSolver .
May 8 2019, 11:30 AM · Hyppopy
s635r created T26319: Add randomness to QuasirandomSolver .
May 8 2019, 11:30 AM · Hyppopy
s635r triaged T26318: Supress console output from 3rd parties as Low priority.
May 8 2019, 10:38 AM · Hyppopy
s635r closed T26241: VirtualFunction should get better name as Resolved.
May 8 2019, 10:32 AM · Hyppopy

Apr 30 2019

s635r closed T25982: add all hp space modalities loguniform, ... as Invalid.
Apr 30 2019, 2:28 PM · Hyppopy
s635r closed T26096: Add groups to hyperparameter dict structure as Resolved.
Apr 30 2019, 2:27 PM · Hyppopy
s635r closed T26086: Fix hard coded paths as Resolved.
Apr 30 2019, 2:23 PM · Hyppopy
s635r closed T26146: restructure gridsearch to be memory safe as Resolved.
Apr 30 2019, 2:23 PM · Hyppopy
s635r closed T26240: File headers are "strange" as Resolved.
Apr 30 2019, 2:22 PM · Hyppopy
s635r closed T26242: Solvers exceptions due to missing hyper parameter configs should be more telling. as Resolved.
Apr 30 2019, 2:14 PM · Hyppopy
s635r closed T26148: Integrate virtual energy function for evaluations tasks as Resolved.
Apr 30 2019, 2:13 PM · Hyppopy

Apr 5 2019

floca closed T26243: Missing number of iterations is not handled if there is an incomplete config section as Resolved.
Apr 5 2019, 10:08 AM · Hyppopy
floca triaged T26242: Solvers exceptions due to missing hyper parameter configs should be more telling. as Normal priority.
Apr 5 2019, 10:06 AM · Hyppopy
floca added a project to T26241: VirtualFunction should get better name: Hyppopy.
Apr 5 2019, 9:50 AM · Hyppopy
floca triaged T26240: File headers are "strange" as Normal priority.
Apr 5 2019, 9:46 AM · Hyppopy

Apr 4 2019

floca created T26239: BlackboxFunction custom parameters in own "bucket" and not in "params".
Apr 4 2019, 4:45 PM · Hyppopy
s635r added a comment to T26227: Own documentation section for hyper parameter aspects.

Was too fast? Thought you might meant what I added. If you had something else in mind shall I reopen the task?

Apr 4 2019, 12:18 PM · Hyppopy
floca added a comment to T26227: Own documentation section for hyper parameter aspects.

Uh oh, that was fast. ;)
I hadn't even made up my mind on that matter. My first purpose was to open up the discussion on that topic...

Apr 4 2019, 11:54 AM · Hyppopy
s635r closed T26227: Own documentation section for hyper parameter aspects as Resolved.
Apr 4 2019, 11:33 AM · Hyppopy

Apr 3 2019

s635r added a comment to T26227: Own documentation section for hyper parameter aspects.

What other aspects do you mean?

Apr 3 2019, 1:57 PM · Hyppopy
s635r closed T26226: Different style for frequency definition in the parameter space definition (for grid search and alike) as Resolved.
Apr 3 2019, 1:55 PM · Hyppopy
floca created T26227: Own documentation section for hyper parameter aspects.
Apr 3 2019, 12:15 PM · Hyppopy