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Aug 2 2016

cordes added a comment to T19612: Can we remove topRightControls (QFrame) in berryNativeTabFolder?.

without_TRC

without_toprightcontrol.png (68×616 px, 9 KB)

Aug 2 2016, 10:23 AM · Auto-closed, MITK, Bugzilla
cordes added projects to T19612: Can we remove topRightControls (QFrame) in berryNativeTabFolder?: MITK, Bugzilla.
Aug 2 2016, 10:23 AM · Auto-closed, MITK, Bugzilla
cordes added a comment to F1309: with_toprightcontrol.png.

with TRC

Aug 2 2016, 10:23 AM
cordes added a comment to T19589: TextOverlay3D should interpret offset as relative to the camera.

Rendering tests work fine on osx.

Aug 2 2016, 10:23 AM · MITK (2016-03), Bugzilla
cordes added a comment to T19520: libMitkCLVigraRandomForest.dylib fails to load on Mac OS X.

More details please!

Aug 2 2016, 10:22 AM · MITK (2016-03), Bugzilla
cordes added a comment to T19520: libMitkCLVigraRandomForest.dylib fails to load on Mac OS X.

Can't confirm this problem anymore. I'll close this bug.

Aug 2 2016, 10:22 AM · MITK (2016-03), Bugzilla
cordes added projects to T19472: outline binary property has no effect: MITK, Bugzilla.
Aug 2 2016, 10:22 AM · MITK (2016-11), Bugzilla
cordes added projects to T19456: Base geometry is not thread safe: MITK, Bugzilla.
Aug 2 2016, 10:22 AM · MITK (2016-11), Bugzilla
cordes added a comment to T19424: Wrong install name for Vigra libraries for Mac OS X.

I can't confirm/reproduce this bug. No errors are thrown during MITK startup. And miniapps are working fine.

Aug 2 2016, 10:22 AM · MITK (2016-03), Bugzilla
cordes added projects to T19393: Display rgb image values during crosshair interaction (status bar): MITK, Bugzilla.
Aug 2 2016, 10:22 AM · Auto-closed, MITK, Bugzilla
cordes added projects to T19309: Make status bar pixel value precision of current crosshair positon editable in mitk preferences: MITK, Bugzilla.
Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added a comment to F1269: Screen Shot 2015-09-08 at 2.01.45 PM.png.

StatusBar

Aug 2 2016, 10:21 AM
cordes added projects to T19281: Silent/Enhanced output information mode for IO operations: MITK, Bugzilla.
Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added projects to T19257: "Show only selected nodes" changes visibility of helper objects: MITK, Bugzilla.
Aug 2 2016, 10:21 AM · MITK, Bugzilla
cordes added a comment to T19232: Update classification miniapp structure.

ToDo: Qt creator does not resolve some includes names (no auto completion is accessible)

Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added a comment to T19229: Destruction in berryHelpPluginActivator broken - assertion fails.

Hey Daniel, I couldn't reproduce the assertion on osx.
But I pushed a branch with the proposed fix.

Aug 2 2016, 10:21 AM · MITK (2015-05-2), Bugzilla
cordes added a comment to T19229: Destruction in berryHelpPluginActivator broken - assertion fails.

[7128fa]: Merge branch 'bug-19229-fixberryHelpPluginActivatorQScoppedPointerDele

Merged commits:

2015-08-12 19:21:16 Jonas Cordes [f85a28]
Manual call of deleteLater (Qt4 fix)

Aug 2 2016, 10:21 AM · MITK (2015-05-2), Bugzilla
cordes added a comment to T19229: Destruction in berryHelpPluginActivator broken - assertion fails.

Hey Daniel, I had to merge it now & thanks for the suggestion!

Aug 2 2016, 10:21 AM · MITK (2015-05-2), Bugzilla
cordes added projects to T19232: Update classification miniapp structure: MITK, Bugzilla.
Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added a comment to T19229: Destruction in berryHelpPluginActivator broken - assertion fails.

On Qt4 the instruction QScopedPointerDeleteLater is not available. I reopened the bug.

Aug 2 2016, 10:21 AM · MITK (2015-05-2), Bugzilla
cordes added projects to T19224: fix return value of time geometry in mitkITKDICOMSeriesReaderHelper: MITK, Bugzilla.
Aug 2 2016, 10:21 AM · Auto-closed, Bugzilla, MITK
cordes added a comment to F1251: fix.patch.

patch mitkITKDICOMSeriesReaderHelper

Aug 2 2016, 10:21 AM
cordes added a comment to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental).

[97ac4d]: COMP: Merge branch 'bug-19168-ICHSegmentationPlugin-integration'

Merged commits:

2015-07-09 18:09:57 Michael Goetz [9637bd]
fix c++11 ...

Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added a comment to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental).

[015924]: COMP: Merge branch 'bug-19168-ICHSegmentationPlugin-integration'

Merged commits:

2015-07-09 16:21:49 Jonas Cordes [1707f1]
remove comment and include

Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added a comment to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental).

[a8f08f]: COMP: Merge branch 'bug-19168-ICHSegmentationPlugin-integration'

Merged commits:

2015-07-09 17:01:56 Jonas Cordes [e211b0]
fix initialisation

Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added a comment to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental).

[737e2e]: Merge branch 'bug-19168-ICHSegmentationPlugin-integration'

Merged commits:

2015-07-09 15:29:25 Jonas Cordes [03a2a9]
fix cmakelists

Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added a comment to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental).

[9ebb0d]: Merge branch 'bug-19168-ICHSegmentationPlugin-integration'

Merged commits:

2015-07-10 10:41:51 Jonas Cordes [d3fccf]
fix include name

Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added a comment to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental).

[02ce4e]: Merge branch 'bug-19168-ICHSegmentationPlugin-GUI'

Merged commits:

2015-07-17 14:54:25 Jonas Cordes [5a136d]
generalize AddImageAsDataNode for all basedata types, add method to export manual created rf, update gui
using icon from the noun project: process by Takao Umehara

Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added a comment to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental).

[0ea995]: COMP: Merge branch 'bug-19168-ICHSegmentationPlugin-integration'

Merged commits:

2015-07-09 16:06:10 Jonas Cordes [4155db]
fix initialisation

Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added a comment to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental).

[34696d]: Merge branch 'bug-19168-ICHSegmentationPlugin-docu'

Merged commits:

2015-07-17 08:54:56 Jonas Cordes [e06b0b]
update plugin docu

Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added a comment to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental).

[90678d]: Merge branch 'bug-19168-ICHSegmentationPlugin-integration'

Merged commits:

2015-07-09 18:30:19 Jonas Cordes [818d03]
rename includes add CLUtilities dependency to cl.segm. plugin

Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added projects to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental): MITK, Bugzilla.
Aug 2 2016, 10:21 AM · Bugzilla, MITK
cordes added projects to T19163: Undo/Redo not working: MITK, Bugzilla.
Aug 2 2016, 10:21 AM · MITK (2015-05-2), Bugzilla
cordes added a comment to T19126: Fill/Erase tool leads to crashes in MAC OS X on several occasions.

No crash on OS X!

Aug 2 2016, 10:20 AM · MITK (2016-03), Bugzilla
cordes added a comment to T19089: Some application menu entries are not shown on Mac OS X.

All menu entries are available! However, the menu itself is added first if the MITK Application is focused once.

Aug 2 2016, 10:20 AM · Auto-closed, MITK, Bugzilla
cordes added a comment to T19004: Preferences - External Programs: Path line edit not editable.

I think, it isn't good practise to set a path to /usr/.
libav forces the common user to install it into /usr/local/bin (the common way for install toolkits like this). There should be no interaction to get access to tools at this location.

Aug 2 2016, 10:20 AM · Auto-closed, MITK, Bugzilla
cordes added projects to T19004: Preferences - External Programs: Path line edit not editable: MITK, Bugzilla.
Aug 2 2016, 10:20 AM · Auto-closed, MITK, Bugzilla
cordes added a comment to T19004: Preferences - External Programs: Path line edit not editable.

/usr/ is a hidden folder so you have to change some OSX system preferences. That does not make the thing! It would be nice to make it editable. If it is not wanted just close it.

Aug 2 2016, 10:20 AM · Auto-closed, MITK, Bugzilla
cordes added projects to T18987: Segmentation plugin: seg. warnings are not displayed if image is loaded via cmd parameter: MITK, Bugzilla.
Aug 2 2016, 10:20 AM · MITK, Bugzilla
cordes added projects to T18984: Region Growing 3D: volume rendering doesn't fits with adaptive region growing changes: MITK, Bugzilla.
Aug 2 2016, 10:20 AM · MITK (2016-11), Bugzilla
cordes added projects to T18978: Otsu 3D tool: colour visualisation of label number and coloured region in table widged: MITK, Bugzilla.
Aug 2 2016, 10:20 AM · Auto-closed, MITK, Bugzilla
cordes added projects to T18974: Threshold tool: no gray value image information available via crosshair interaction: MITK, Bugzilla.
Aug 2 2016, 10:20 AM · Auto-closed, MITK, Bugzilla
cordes added projects to T18975: Threshold tool: no undo/redo available: MITK, Bugzilla.
Aug 2 2016, 10:20 AM · Auto-closed, MITK, Bugzilla
cordes added a comment to T18870: Add classification module to MITK.

[73023c]: Merge branch 'bug-18870-ParallelWeightedPrediction'

Merged commits:

2015-08-13 11:01:23 Jonas Cordes [9efa26]
add weighted test

Aug 2 2016, 10:19 AM · Bugzilla, MITK
cordes added a comment to T18870: Add classification module to MITK.

[5f8053]: COMP: Merge branch 'bug-18870-ParallelWeightedPrediction'

Merged commits:

2015-08-13 13:29:58 Jonas Cordes [fc4cea]
replace deprecated auto_ptr with unique_ptr

Aug 2 2016, 10:19 AM · Bugzilla, MITK
cordes added a comment to T18870: Add classification module to MITK.

[095abb]: Merge branch 'bug-18870-RandomForestIO'

Merged commits:

2015-08-11 23:46:46 Jonas Cordes [e13d43]
itemlist is now element of the abstact classifier
property list observer for parameter conversion
simple property access-names

Aug 2 2016, 10:19 AM · Bugzilla, MITK
cordes added a comment to T18870: Add classification module to MITK.

[105866]: Merge branch 'bug-18870-20150720-Integration2'

Merged commits:

2015-07-20 15:51:59 Michael Goetz [4bceeb]
Added new Interface for TreeWEight

Aug 2 2016, 10:19 AM · Bugzilla, MITK
cordes added a comment to T18870: Add classification module to MITK.

[87753c]: COMP: Merge branch 'bug-18870-DataCollection-fix-leaks'

Merged commits:

2015-07-22 13:26:41 Jonas Cordes [f91acc]
fix debug leaks

Aug 2 2016, 10:19 AM · Bugzilla, MITK
cordes added a comment to T18870: Add classification module to MITK.

[0b9853]: COMP: Merge branch 'bug-18870-DataCollection-fix-leaks'

Merged commits:

2015-07-22 13:35:10 Jonas Cordes [b32d8f]
add include

Aug 2 2016, 10:19 AM · Bugzilla, MITK
cordes added a comment to T18857: General icons not visible in installed Workbench.

add required libqsvgicon.dylib (see T19679)

Aug 2 2016, 10:19 AM · MITK (2016-11), Bugzilla
cordes added projects to T18840: Delete selected datanodes use Ctrl+, Backspace on OSX: MITK, Bugzilla.
Aug 2 2016, 10:19 AM · Auto-closed, MITK, Bugzilla
cordes added projects to T18838: datamanger view hides imagenavigator tab: MITK, Bugzilla.
Aug 2 2016, 10:19 AM · MITK (2015-03), Bugzilla
cordes added a comment to F1232: Screen Shot 2015-03-11 at 15.26.16.png.

screenshot

Aug 2 2016, 10:19 AM
cordes added a comment to T18807: Menu bar moved down into the application.

[3f1ef8]: Merge branch 'bug-18807-menubar-osx'

Merged commits:

2015-03-04 16:33:02 Jonas Cordes [20eb3c]
add exception for APPLE

Aug 2 2016, 10:19 AM · MITK (2015-03), Bugzilla
cordes added projects to T18807: Menu bar moved down into the application: MITK, Bugzilla.
Aug 2 2016, 10:19 AM · MITK (2015-03), Bugzilla
cordes added a comment to F1228: Screen Shot 2015-03-04 at 14.03.22.png.

screenshot

Aug 2 2016, 10:19 AM
cordes added a comment to T18792: Crash on "reset perspective" after a "close perspective" action.

Thanks for testing.

Aug 2 2016, 10:19 AM · MITK (2015-03), Bugzilla
cordes added projects to T18791: Crash on multicomponent image segmentation using 3d interpolation: MITK, Bugzilla.
Aug 2 2016, 10:19 AM · Auto-closed, MITK, Bugzilla
cordes added projects to T18792: Crash on "reset perspective" after a "close perspective" action: MITK, Bugzilla.
Aug 2 2016, 10:19 AM · MITK (2015-03), Bugzilla
cordes added a comment to T18791: Crash on multicomponent image segmentation using 3d interpolation.

e.g. diffusion weighted images are multi component images (rename *.dwi to *.nrrd, if DI-MITK is disabled)

Aug 2 2016, 10:19 AM · Auto-closed, MITK, Bugzilla
cordes added a comment to T18737: [Yosemite] OpenCV SuperBuild doesn't compile.

The unorderd map include was found correctly.

Aug 2 2016, 10:18 AM · MITK (2015-03), Bugzilla
cordes added projects to T18737: [Yosemite] OpenCV SuperBuild doesn't compile: MITK, Bugzilla.
Aug 2 2016, 10:18 AM · MITK (2015-03), Bugzilla
cordes added projects to T18665: Autocrop does not work correctly with rotated images: MITK, Bugzilla.
Aug 2 2016, 10:18 AM · MITK (2016-11), Bugzilla
cordes added a comment to F1213: Screen Shot 2015-01-22 at 12.43.01.png.

atocrop displacment

Aug 2 2016, 10:18 AM
cordes added a comment to T18593: Component slider applied to all datanodes but not updated.

[c3c784]: Merge branch 'bug-18593-compnentslider-fix-position'

Merged commits:

2015-04-08 17:05:37 Jonas Cordes [c0ac23]
undo PropertyRemoved calls

Aug 2 2016, 10:17 AM · MITK (2015-03), Bugzilla
cordes added a comment to T18593: Component slider applied to all datanodes but not updated.

[2f58ae]: Merge branch 'bug-18593-compnentslider-fix-position'

Merged commits:

2015-04-01 15:48:13 Jonas Cordes [4ae112]
call PropertyRemoved for completeness

Aug 2 2016, 10:17 AM · MITK (2015-03), Bugzilla
cordes added projects to T18593: Component slider applied to all datanodes but not updated: MITK, Bugzilla.
Aug 2 2016, 10:17 AM · MITK (2015-03), Bugzilla
cordes added a comment to T18567: Enable 2D morphological operations in segmentation utility plugin.

ToDo: adaptation of check-list

Aug 2 2016, 10:17 AM · MITK (2015-03), Bugzilla
cordes added projects to T18567: Enable 2D morphological operations in segmentation utility plugin: MITK, Bugzilla.
Aug 2 2016, 10:17 AM · MITK (2015-03), Bugzilla
cordes added a comment to T18535: Crash on closing MITK Workbench.

Works well too on osx.

Aug 2 2016, 10:17 AM · MITK (2015-03), Bugzilla
cordes added a comment to T18535: Crash on closing MITK Workbench.

Bug still exist.

Aug 2 2016, 10:17 AM · MITK (2015-03), Bugzilla
cordes added a comment to F1195: stack.txt.

callstack

Aug 2 2016, 10:17 AM
cordes added projects to T18535: Crash on closing MITK Workbench: MITK, Bugzilla.
Aug 2 2016, 10:17 AM · MITK (2015-03), Bugzilla
cordes added projects to T18534: MITK Diffusion crashes on startup if diffusiondicomimport view is open: MITK, Bugzilla.
Aug 2 2016, 10:17 AM · MITK (2015-03), Bugzilla
cordes added a comment to T18521: [Mac, Qt5] Workbench Views don't react to mouse events properly.

it seems to be working well in MITK. Also the rearrangement of views was no problem in MITK (is this also your observation?). I tested it on osx 10.11 using qt 5.5.1 and osx 10.10 using qt 5.4.2 - both debug debug builds. A big step forward, good work!!

Aug 2 2016, 10:17 AM · MITK (2016-03), Bugzilla
cordes added a comment to T18521: [Mac, Qt5] Workbench Views don't react to mouse events properly.

We attempted to isolate the bug. But no clear issue was found. The combination of Blueberry framework and qt5 leads to the problem (maybe some qt5 related object renamings...). Sorry, but there was no more to get.
I will stay tuned!

Aug 2 2016, 10:17 AM · MITK (2016-03), Bugzilla
cordes added a comment to T18521: [Mac, Qt5] Workbench Views don't react to mouse events properly.

yes it's 18517 and already fixed! Thank you!

Aug 2 2016, 10:17 AM · MITK (2016-03), Bugzilla
cordes added projects to T18521: [Mac, Qt5] Workbench Views don't react to mouse events properly: MITK, Bugzilla.
Aug 2 2016, 10:17 AM · MITK (2016-03), Bugzilla
cordes added projects to T18518: [Mac, Qt5] Qt related warnings during startup: MITK, Bugzilla.
Aug 2 2016, 10:17 AM · MITK (2016-11), Bugzilla
cordes added a comment to T18518: [Mac, Qt5] Qt related warnings during startup.

The first warning is related to the (never seen) splash screen of mitkDiffusion.

Aug 2 2016, 10:17 AM · MITK (2016-11), Bugzilla
cordes added a comment to T18518: [Mac, Qt5] Qt related warnings during startup.

[53ed74]: Merge branch 'bug-18518-qtrelatedwarnings'

Merged commits:

2014-12-09 11:36:57 Jonas Cordes [dc4236]
activating the MitkDiffusion splash screen to suppress qt warning
We have to add the main qrc file to resolve resource identifier

Aug 2 2016, 10:17 AM · MITK (2016-11), Bugzilla
cordes added projects to T18517: [Mac, Qt5] Wrong qt style if plugin tab is at top location: MITK, Bugzilla.
Aug 2 2016, 10:17 AM · MITK (2015-03), Bugzilla
cordes added a comment to F1190: Screen Shot 2014-12-03 at 13.00.43.png.

example

Aug 2 2016, 10:17 AM
cordes added a comment to T18517: [Mac, Qt5] Wrong qt style if plugin tab is at top location.

in QT_version < 5 the "setUnifiedTitleAndToolBarOnMac" was set

Aug 2 2016, 10:17 AM · MITK (2015-03), Bugzilla
cordes added a comment to T18517: [Mac, Qt5] Wrong qt style if plugin tab is at top location.

[d379f3]: Merge branch 'bug-18517-qt5ToolBarStyleAdaptions'

Merged commits:

2014-12-09 14:49:04 Jonas Cordes [7e932e]
set UnifiedTitleAndToolBarOnMac to default (false) if qt version > 5

Aug 2 2016, 10:17 AM · MITK (2015-03), Bugzilla
cordes added a comment to T18421: 'untitled' added by QFileDialog to folder path.

solved using qt5, close?

Aug 2 2016, 10:16 AM · MITK (2015-03), Bugzilla
cordes added projects to T18421: 'untitled' added by QFileDialog to folder path: MITK, Bugzilla.
Aug 2 2016, 10:16 AM · MITK (2015-03), Bugzilla
cordes added a comment to T18420: Crash during diffusion mosaic data import.

[62ff1f]: Merge branch 'bug-18420-DiffusionDICOMMosaicLoadingCrash'

Merged commits:

2014-12-03 17:36:03 Jan Hering [5f55c2]
Fixed mosaic index computation

Aug 2 2016, 10:16 AM · MITK (2015-03), Bugzilla
cordes added projects to T18420: Crash during diffusion mosaic data import: MITK, Bugzilla.
Aug 2 2016, 10:16 AM · MITK (2015-03), Bugzilla
cordes added projects to T18403: Apply current shown level window setting to all selected images: MITK, Bugzilla.
Aug 2 2016, 10:16 AM · Bugzilla, MITK
cordes added a comment to T18374: DiffusionImage dynamic cast fails on clang.

[34b042]: Merge branch 'bug-18374-dynamic-cast-error'

Merged commits:

2014-10-29 16:05:52 Jonas Cordes [356cb2]
add MITK_EXPORT to DiffusionImage to fix dylib symbol visibility

Aug 2 2016, 10:16 AM · MITK (2015-03), Bugzilla
cordes added projects to T18374: DiffusionImage dynamic cast fails on clang: MITK, Bugzilla.
Aug 2 2016, 10:16 AM · MITK (2015-03), Bugzilla
cordes added projects to T18300: crash in DICOM series reader if patient name is not set: MITK, Bugzilla.
Aug 2 2016, 10:15 AM · MITK (2014-10), Bugzilla
cordes added a comment to T18300: crash in DICOM series reader if patient name is not set.

Yes, from my view is there no problem

Aug 2 2016, 10:15 AM · MITK (2014-10), Bugzilla
cordes added projects to T18294: No I/O available for diffusion weighted images: MITK, Bugzilla.
Aug 2 2016, 10:15 AM · MITK (2014-10), Bugzilla
cordes added a comment to T18294: No I/O available for diffusion weighted images.

is working on current master

Aug 2 2016, 10:15 AM · MITK (2014-10), Bugzilla
cordes added a comment to T18271: MitkContourModel does not autoload.

[af6c4d]: Merge branch 'bug-18271-autoload-MitkContourModel'

Merged commits:

2015-04-01 13:58:03 Jonas Cordes [847755]
add auto load instruction

Aug 2 2016, 10:15 AM · Auto-closed, MITK, Bugzilla
cordes added a comment to T18270: package error: install_name_tool and strip.

output during make package

Aug 2 2016, 10:15 AM · Bugzilla, MITK
cordes added projects to T18270: package error: install_name_tool and strip: MITK, Bugzilla.
Aug 2 2016, 10:15 AM · Bugzilla, MITK
cordes added a comment to T18243: fiberbundlex can only be saved as .fib.

[9a470f]: COMP Merge branch 'bug-18243-comp'

Merged commits:

2014-10-16 16:50:24 Jonas Cordes [fa8910]
add fibertrackingModule activator

Aug 2 2016, 10:15 AM · MITK (2014-10), Bugzilla