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Nov 19 2019

• kirchnth closed T19099: 2D Streaming in mitkWorkbench/BlueBerry (?) as Resolved.

This has been closed years ago - not sure why it has been reopened.

Nov 19 2019, 4:45 PM · Bugzilla, MITK

Nov 12 2019

• kirchnth triaged T26808: mitkPhotoacousticVolumeTest fails on Ubuntu (only) as Normal priority.
Nov 12 2019, 5:48 PM · MITK, Photoacoustics
• kirchnth closed T26798: mitkPAFilterServiceTest fails as Resolved.
Nov 12 2019, 5:45 PM · MITK, Photoacoustics

Nov 11 2019

• kirchnth committed rMITK8a6a7a858b95: Merge branch 'T26759-radiusfixforrealz' (authored by • kirchnth).
Merge branch 'T26759-radiusfixforrealz'
Nov 11 2019, 7:02 PM
• kirchnth committed rMITK5e48a9541d24: Merge branch 'master' of https://phabricator.mitk.org/source/mitk (authored by • kirchnth).
Merge branch 'master' of https://phabricator.mitk.org/source/mitk
Nov 11 2019, 7:02 PM
• kirchnth committed rMITKa0185365fe79: fixed usedLines on GPU + minor cleanup (authored by • kirchnth).
fixed usedLines on GPU + minor cleanup
Nov 11 2019, 6:58 PM
• kirchnth committed rMITK52ea3168637f: elementPositions[] went out of range causing weird apparent apodization (authored by • kirchnth).
elementPositions[] went out of range causing weird apparent apodization
Nov 11 2019, 5:29 PM

Nov 8 2019

• kirchnth committed rMITK49ac2ed488ee: rewrote that code because we couldn't understand it - there are still issues WIP (authored by • kirchnth).
rewrote that code because we couldn't understand it - there are still issues WIP
Nov 8 2019, 6:49 PM
• kirchnth committed rMITKd66b6b5b92dc: this should fix the test issue by replication of the behavior of GPU code on… (authored by • kirchnth).
this should fix the test issue by replication of the behavior of GPU code on…
Nov 8 2019, 3:13 PM
• kirchnth added a reverting change for rMITKc5c54c6401e3: something we tried out - but it broke apodization: rMITK7d111b31db9b: Revert "something we tried out - but it broke apodization".
Nov 8 2019, 3:13 PM
• kirchnth committed rMITK7d111b31db9b: Revert "something we tried out - but it broke apodization" (authored by • kirchnth).
Revert "something we tried out - but it broke apodization"
Nov 8 2019, 3:13 PM
• kirchnth committed rMITKc5c54c6401e3: something we tried out - but it broke apodization (authored by • kirchnth).
something we tried out - but it broke apodization
Nov 8 2019, 1:05 PM
• kirchnth committed rMITKf3ffab2e6e6a: minor leftover gui issue (authored by • kirchnth).
minor leftover gui issue
Nov 8 2019, 9:51 AM
• kirchnth added a reverting change for rMITK712937da269b: this fixes a minor leftover style issue in the plugin: rMITK1eadc1a7d2ca: Revert "this fixes a minor leftover style issue in the plugin".
Nov 8 2019, 9:51 AM
• kirchnth committed rMITK1eadc1a7d2ca: Revert "this fixes a minor leftover style issue in the plugin" (authored by • kirchnth).
Revert "this fixes a minor leftover style issue in the plugin"
Nov 8 2019, 9:51 AM
• kirchnth committed rMITK712937da269b: this fixes a minor leftover style issue in the plugin (authored by • kirchnth).
this fixes a minor leftover style issue in the plugin
Nov 8 2019, 9:51 AM
• kirchnth triaged T26798: mitkPAFilterServiceTest fails as High priority.

sorry that this took me a month to get to

Nov 8 2019, 9:35 AM · MITK, Photoacoustics
• kirchnth added a comment to T26798: mitkPAFilterServiceTest fails.

this is due to radius behavior changes

Nov 8 2019, 9:34 AM · MITK, Photoacoustics
• kirchnth created T26798: mitkPAFilterServiceTest fails.
Nov 8 2019, 9:33 AM · MITK, Photoacoustics

Nov 7 2019

• kirchnth placed T23189: Saving large (nrrd) files is ridiculously slow due to compression up for grabs.
Nov 7 2019, 5:30 PM · MITK
• kirchnth closed T26683: make ippai modularerer as Wontfix.
Nov 7 2019, 5:28 PM · IMSY, Photoacoustics
• kirchnth closed T26797: PA Beamforming Plugin redesign as Resolved.
Nov 7 2019, 5:13 PM · Photoacoustics, MITK
• kirchnth committed rMITKd3cd783b76af: Merge branch 'T26797-redesignPAplugin' (authored by • kirchnth).
Merge branch 'T26797-redesignPAplugin'
Nov 7 2019, 3:56 PM
• kirchnth committed rMITK5fc6c8f501a8: some more tooltips and minor changes (authored by • kirchnth).
some more tooltips and minor changes
Nov 7 2019, 3:55 PM
• kirchnth committed rMITK0cfd3226413b: redesigned UI for PA image processing and set new sensible defaults and… (authored by • kirchnth).
redesigned UI for PA image processing and set new sensible defaults and…
Nov 7 2019, 3:21 PM
• kirchnth added a comment to T26797: PA Beamforming Plugin redesign.

Pushed new branch T26797-redesignPAplugin.

Nov 7 2019, 3:21 PM · Photoacoustics, MITK
• kirchnth triaged T26797: PA Beamforming Plugin redesign as Wishlist priority.
Nov 7 2019, 12:47 PM · Photoacoustics, MITK
• kirchnth closed T26796: PA Beamforming writes the bf result of the first Slice in all Slices as Resolved.
Nov 7 2019, 12:44 PM · Photoacoustics, MITK
• kirchnth closed T26785: camiPhotoacousticsWorkstation build config does not build Commandline Tool as Resolved.
Nov 7 2019, 12:43 PM · MITK, Photoacoustics
• kirchnth committed rMITK3899f0a19eb9: camiPhotoacousticsWorkstation buildconfig does not build the relevant command… (authored by • kirchnth).
camiPhotoacousticsWorkstation buildconfig does not build the relevant command…
Nov 7 2019, 12:43 PM

Nov 6 2019

• kirchnth committed rMITK40e7fb0dd829: Merge branch 'T26796-openclindexfix' (authored by • kirchnth).
Merge branch 'T26796-openclindexfix'
Nov 6 2019, 6:21 PM
• kirchnth committed rMITK58735c09042a: fixed an index that caused reading from slice 0 always (authored by • kirchnth).
fixed an index that caused reading from slice 0 always
Nov 6 2019, 6:20 PM
• kirchnth added a comment to T26796: PA Beamforming writes the bf result of the first Slice in all Slices.

Pushed new branch T26796-openclindexfix.

Nov 6 2019, 6:20 PM · Photoacoustics, MITK
• kirchnth committed rMITK542c14204f31: the slice index was missing in DAS.cl for curved arrays ... fixed that oversight (authored by • kirchnth).
the slice index was missing in DAS.cl for curved arrays ... fixed that oversight
Nov 6 2019, 6:13 PM
• kirchnth added a comment to T26796: PA Beamforming writes the bf result of the first Slice in all Slices.

Pushed new branch T26796-opencloversightfixed.

Nov 6 2019, 6:13 PM · Photoacoustics, MITK
• kirchnth added a comment to T26796: PA Beamforming writes the bf result of the first Slice in all Slices.

traced the error to the DAS.cl

Nov 6 2019, 5:43 PM · Photoacoustics, MITK
• kirchnth updated subscribers of T26796: PA Beamforming writes the bf result of the first Slice in all Slices.
Nov 6 2019, 5:21 PM · Photoacoustics, MITK
• kirchnth triaged T26796: PA Beamforming writes the bf result of the first Slice in all Slices as High priority.
Nov 6 2019, 5:19 PM · Photoacoustics, MITK
• kirchnth added a revision to T26785: camiPhotoacousticsWorkstation build config does not build Commandline Tool: Unknown Object (Differential Revision).
Nov 6 2019, 4:17 PM · MITK, Photoacoustics
• kirchnth committed rMITKbf78254487a4: included command line tools in build configuration (authored by • kirchnth).
included command line tools in build configuration
Nov 6 2019, 2:57 PM
• kirchnth added a comment to T26785: camiPhotoacousticsWorkstation build config does not build Commandline Tool.

Pushed new branch T26785-incluceCLtoolsInBuildConfig.

Nov 6 2019, 2:57 PM · MITK, Photoacoustics
• kirchnth added a project to T26785: camiPhotoacousticsWorkstation build config does not build Commandline Tool: MITK.
Nov 6 2019, 2:57 PM · MITK, Photoacoustics
• kirchnth added a comment to T26795: scrolling in a 2d render window scrolls simultaneously in all three directions .

also occurs in clean build - in addition: opening the Workbench for the first time after build causes a crash

Nov 6 2019, 2:35 PM · Noteworthy, MITK
• kirchnth added a comment to T26795: scrolling in a 2d render window scrolls simultaneously in all three directions .

note that I did not use a clean build

Nov 6 2019, 2:30 PM · Noteworthy, MITK
• kirchnth triaged T26795: scrolling in a 2d render window scrolls simultaneously in all three directions as High priority.
Nov 6 2019, 2:29 PM · Noteworthy, MITK

Oct 28 2019

• kirchnth committed rMITKad875063ff2b: Merge branch 'T26759-quick-conversion-fix' (authored by • kirchnth).
Merge branch 'T26759-quick-conversion-fix'
Oct 28 2019, 2:57 PM
• kirchnth committed rMITKc436f649e29a: caused gcc warning (authored by • kirchnth).
caused gcc warning
Oct 28 2019, 2:56 PM

Sep 18 2019

• kirchnth closed T26690: Photoacoustic Image Processing has WarningsAsErrors with gcc as Resolved.

this should do it

Sep 18 2019, 6:09 PM · Photoacoustics, MITK
• kirchnth committed rMITKfc81837e4f63: Merge branch 'T26690-fixPAgccWarningsInCommandLineToolToo' (authored by • kirchnth).
Merge branch 'T26690-fixPAgccWarningsInCommandLineToolToo'
Sep 18 2019, 6:00 PM
• kirchnth added a comment to T26690: Photoacoustic Image Processing has WarningsAsErrors with gcc.

Pushed new branch T26690-fixPAgccWarningsInCommandLineToolToo.

Sep 18 2019, 5:59 PM · Photoacoustics, MITK
• kirchnth committed rMITK3d0bcd2006c5: Merge branch 'T26690-fixPAgccWarnings' (authored by • kirchnth).
Merge branch 'T26690-fixPAgccWarnings'
Sep 18 2019, 5:38 PM
• kirchnth added a comment to T26690: Photoacoustic Image Processing has WarningsAsErrors with gcc.

Pushed new branch T26690-fixPAgccWarnings.

Sep 18 2019, 5:37 PM · Photoacoustics, MITK
• kirchnth triaged T26690: Photoacoustic Image Processing has WarningsAsErrors with gcc as High priority.
Sep 18 2019, 4:31 PM · Photoacoustics, MITK

Sep 17 2019

• kirchnth added a comment to T26683: make ippai modularerer.

nvmd about making deeplearning dependencies optional - seems like this is not practical

Sep 17 2019, 3:42 PM · IMSY, Photoacoustics
• kirchnth triaged T26683: make ippai modularerer as Normal priority.
Sep 17 2019, 2:34 PM · IMSY, Photoacoustics

Mar 13 2019

• kirchnth closed T25122: PA Bandpass shifts images for each slice a bit more as Invalid.
Mar 13 2019, 2:53 PM · MITK, Photoacoustics
• kirchnth moved T25714: Write volume reconstruction from wip to Backlog on the Photoacoustics board.
Mar 13 2019, 2:51 PM · IMSY, Photoacoustics

Sep 17 2018

• kirchnth added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

OpenIGTLink-495e505.zip835 KBDownload
is the local oigtl zipped source files in that last commit

Sep 17 2018, 2:16 PM · Photoacoustics, Restricted Project, IGT, MITK

Sep 14 2018

• kirchnth committed rMITKd78ede1444c1: new ansatz to fix T24778 oitgl release 3 doesnt install as is (but only on… (authored by • kirchnth).
new ansatz to fix T24778 oitgl release 3 doesnt install as is (but only on…
Sep 14 2018, 4:00 PM
• kirchnth added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

Pushed new branch T24778--update-oigtl-to-current-master.

Sep 14 2018, 3:59 PM · Photoacoustics, Restricted Project, IGT, MITK

Sep 13 2018

• kirchnth moved T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04] from Backlog to wip on the Photoacoustics board.
Sep 13 2018, 2:07 PM · Photoacoustics, Restricted Project, IGT, MITK

Sep 7 2018

• kirchnth added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

@franza yes i had the same problem - i did not get around to have a close look at it yet :/

Sep 7 2018, 12:36 PM · Photoacoustics, Restricted Project, IGT, MITK

Aug 13 2018

• groehl awarded T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04] a The World Burns token.
Aug 13 2018, 1:31 PM · Photoacoustics, Restricted Project, IGT, MITK
• groehl awarded T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04] a The World Burns token.
Aug 13 2018, 1:30 PM · Photoacoustics, Restricted Project, IGT, MITK

Jul 24 2018

• kirchnth moved T25122: PA Bandpass shifts images for each slice a bit more from Backlog to wip on the Photoacoustics board.
Jul 24 2018, 1:48 PM · MITK, Photoacoustics

Jul 23 2018

• kirchnth added a parent task for T24679: Motion compensation for PAUS imaging: Unknown Object (Maniphest Task).
Jul 23 2018, 8:13 PM · MITK, Photoacoustics
• kirchnth added a parent task for T25122: PA Bandpass shifts images for each slice a bit more: Unknown Object (Maniphest Task).
Jul 23 2018, 8:12 PM · MITK, Photoacoustics
• kirchnth triaged T25122: PA Bandpass shifts images for each slice a bit more as Normal priority.
Jul 23 2018, 8:11 PM · MITK, Photoacoustics
• kirchnth added a comment to T24679: Motion compensation for PAUS imaging.

@adler is this finished and merged back to the master?

Jul 23 2018, 3:01 PM · MITK, Photoacoustics
• kirchnth closed T23538: Annotation Rendering Tests fail as Resolved.

old and obsolete task

Jul 23 2018, 2:53 PM · Restricted Project, MITK

Jul 11 2018

• kirchnth committed rMITK3125db623bed: fixed build warnings/errors for gcc (authored by • kirchnth).
fixed build warnings/errors for gcc
Jul 11 2018, 4:21 PM

Jul 2 2018

• kirchnth committed rMITK3c252649449d: Merge branch 'T25018-memoryfix' (authored by • kirchnth).
Merge branch 'T25018-memoryfix'
Jul 2 2018, 2:21 PM
• kirchnth committed rMITKa9db46002c1d: this fixes a memory leak (authored by • kirchnth).
this fixes a memory leak
Jul 2 2018, 2:20 PM

Jun 25 2018

• kirchnth added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

@kislinsk can you upload https://github.com/openigtlink/OpenIGTLink/archive/v3.0.tar.gz under the name OpenIGTLink-release-3.0.tar.gz please?
cf. T24971

Jun 25 2018, 6:54 PM · Photoacoustics, Restricted Project, IGT, MITK
• kirchnth lowered the priority of T24971: .zip files do not extract in superbuild (Windows non-NTFS file system) from High to Low.

fixed it there but i'll leave it open because it remains a general issue

Jun 25 2018, 3:26 PM · Restricted Project, IGT, MITK
• kirchnth updated subscribers of T24971: .zip files do not extract in superbuild (Windows non-NTFS file system).
Jun 25 2018, 3:10 PM · Restricted Project, IGT, MITK
• kirchnth renamed T24971: .zip files do not extract in superbuild (Windows non-NTFS file system) from openCV does not extract in superbuild (Windows) to .zip files do not extract in superbuild (Windows non-NTFS file system).
Jun 25 2018, 3:10 PM · Restricted Project, IGT, MITK
• kirchnth added a comment to T24971: .zip files do not extract in superbuild (Windows non-NTFS file system).

with the .tar.gz and new hash it works

Jun 25 2018, 3:09 PM · Restricted Project, IGT, MITK
• kirchnth claimed T24971: .zip files do not extract in superbuild (Windows non-NTFS file system).

yep those seem to work
also: apparently this issue occurs when building on non-NTFS disks i.e. exFAT (testing now but we might think about only having .tar.gz files on thirdparty)

Jun 25 2018, 3:02 PM · Restricted Project, IGT, MITK
• kirchnth added a comment to T24971: .zip files do not extract in superbuild (Windows non-NTFS file system).

Note that the issue seems to occur for .zip files from thirdparty in general - but not on all windows machines
the .tar.gz files all work fine

Jun 25 2018, 2:55 PM · Restricted Project, IGT, MITK
• kirchnth added a comment to T24971: .zip files do not extract in superbuild (Windows non-NTFS file system).
In T24971#138723, @kislinsk wrote:

Note that giving new tasks a high priority most probably means that it is important enough that you work on it instead of expecting someone will do so. So go ahead. :-)

Jun 25 2018, 2:52 PM · Restricted Project, IGT, MITK

Jun 19 2018

• kirchnth added a parent task for T24908: Add hardware signal delay compensation to Photoacoustics Algorithms Module: Unknown Object (Maniphest Task).
Jun 19 2018, 9:01 PM · MITK, Photoacoustics
• kirchnth committed rMITKa1bf947fe208: Merge branch 'T24921-fixOOM' (authored by • kirchnth).
Merge branch 'T24921-fixOOM'
Jun 19 2018, 7:30 PM
• kirchnth committed rMITK14601dd242e1: changed to more default default values (authored by • kirchnth).
changed to more default default values
Jun 19 2018, 5:32 PM
• kirchnth committed rMITK6d8e179747c3: Fixed the Bandpass Frequencies to have the correct meaning and range Added a… (authored by • kirchnth).
Fixed the Bandpass Frequencies to have the correct meaning and range Added a…
Jun 19 2018, 5:28 PM
• kirchnth committed rMITK4d86c7a00cc9: Merge branch 'master' of https://phabricator.mitk.org/source/mitk into T24921… (authored by • kirchnth).
Merge branch 'master' of https://phabricator.mitk.org/source/mitk into T24921…
Jun 19 2018, 5:28 PM
• kirchnth committed rMITKaf3940244436: fixes gcc compile warnings (initialization) (authored by • kirchnth).
fixes gcc compile warnings (initialization)
Jun 19 2018, 2:28 PM

Jun 8 2018

• kirchnth committed rMITK71faba58d154: Merge branch 'T24740-PhotoacousticsAlgorithms-Tests' (authored by • kirchnth).
Merge branch 'T24740-PhotoacousticsAlgorithms-Tests'
Jun 8 2018, 4:38 PM
• kirchnth closed T24740: Write tests for PhotoacousticsAlgorithms as Resolved.

fixed that band pass re-sampling and will now merge it into master.

Jun 8 2018, 3:42 PM · Photoacoustics, MITK
• kirchnth committed rMITK69f2056cf13b: fixed the check power of two check and resampling for the band pass filter also… (authored by • kirchnth).
fixed the check power of two check and resampling for the band pass filter also…
Jun 8 2018, 3:37 PM

Jun 7 2018

• kirchnth committed rMITK47fd4fbb5097: removed refactoring errors (authored by • kirchnth).
removed refactoring errors
Jun 7 2018, 4:50 PM
• kirchnth added a comment to T24740: Write tests for PhotoacousticsAlgorithms.
[529.464] Instantiating BandpassFilter...
[529.464] Instantiating BandpassFilter...[Done]
[532.181] SingleVoxel: 0.514558
[532.181] HighPass: 0
[532.181] LowPass: 1e+06
[532.181] cutoffPixelHighPass: 0
[532.181] cutoffPixelLowPass: 1023.5
[532.771] Destructed BandpassFilter.
[532.771] [PhotoacousticFilterService] destructed filter service
terminate called after throwing an instance of 'itk::ExceptionObject'
  what():  /home/thomaskirchner/projects/refac/mitk-superbuild/ep/src/ITK/Modules/Core/Common/src/itkMultiThreader.cxx:399:
itk::ERROR: MultiThreader(0x7efc8800bec0): Exception occurred during SingleMethodExecute
/home/thomaskirchner/projects/refac/mitk/Modules/PhotoacousticsAlgorithms/include/../ITKFilter/ITKUltrasound/itkVnlFFT1DRealToComplexConjugateImageFilter.hxx:66:
itk::ERROR: VnlFFT1DRealToComplexConjugateImageFilter(0x7efc88012890): Illegal Array DIM for FFT
Jun 7 2018, 4:49 PM · Photoacoustics, MITK

May 29 2018

• kirchnth committed rMITK1f437c4ead6a: fixed faulty function call in PA plugin (authored by • kirchnth).
fixed faulty function call in PA plugin
May 29 2018, 4:30 PM
• kirchnth committed rMITKd7b75b31e65b: fixes for linux gpu implementations (authored by • kirchnth).
fixes for linux gpu implementations
May 29 2018, 4:00 PM

May 25 2018

• kirchnth committed rMITK84f74a33b297: switched openigtlink lib used to release 3 and dealt with the ensuing build… (authored by • kirchnth).
switched openigtlink lib used to release 3 and dealt with the ensuing build…
May 25 2018, 4:13 PM
• kirchnth added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

Pushed new branch T24778-update-oigtl-to-v3.

May 25 2018, 4:12 PM · Photoacoustics, Restricted Project, IGT, MITK

May 15 2018

• kirchnth triaged T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04] as High priority.
May 15 2018, 3:43 PM · Photoacoustics, Restricted Project, IGT, MITK
• kirchnth added a comment to T24333: Noteworthy new features since MITK 2016.11.

T22228 is a new plugin with a lot of beamforming functionality for photoacoustics and ultrasound

May 15 2018, 2:22 PM · MITK (2018-04)

Apr 19 2018

• kirchnth closed T24688: Memory leak while cropping in PA image processing as Resolved.
Apr 19 2018, 7:18 PM · Photoacoustics, MITK
• kirchnth committed rMITK9cc018487fcb: Merge branch 'T24688-leak-quick-fix' (authored by • kirchnth).
Merge branch 'T24688-leak-quick-fix'
Apr 19 2018, 7:17 PM
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