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Jul 19 2019

steint committed rMITKe56916a2692f: Merge branch 'T26348-fix-planar-figure-out-of-image' (authored by steint).
Merge branch 'T26348-fix-planar-figure-out-of-image'
Jul 19 2019, 10:43 AM
steint committed rMITK4518136ab9be: Refactoring of calculation job ends. Fixes T26348. (authored by steint).
Refactoring of calculation job ends. Fixes T26348.
Jul 19 2019, 10:09 AM
kislinsk triaged T26396: [Segmentation] Refactor functions to create new (empty) segmentations as Wishlist priority.
Jul 19 2019, 9:35 AM · Next Milestone, Request for Discussion
kislinsk triaged T26472: CMAKE_INSTALL_PREFIX is not set for external projects of extenstions as Normal priority.
Jul 19 2019, 9:35 AM · Auto-closed, MITK
jungsi moved T23742: Implement proof of concept for new segmentation data type from MITK Meeting to Backlog on the Request for Discussion board.
Jul 19 2019, 9:33 AM · MITK
pfjaeger <p.jaeger@dkfz.de> committed rMDTPUBLIC6d01387e0ff7: repush with original account (authored by pfjaeger <p.jaeger@dkfz.de>).
repush with original account
Jul 19 2019, 2:39 AM

Jul 18 2019

Paul Ferdinand Jaeger <pjaeger@fb.com> committed rMDTPUBLICb63aba657328: fixed bug in bbox regression loss of Retina Net / Retina U-Net, that restricted… (authored by Paul Ferdinand Jaeger <pjaeger@fb.com>).
fixed bug in bbox regression loss of Retina Net / Retina U-Net, that restricted…
Jul 18 2019, 3:23 PM

Jul 15 2019

kalali added a revision to T26490: [mxn multi widget] Enable MITK mouse mode and allow mode switching: Unknown Object (Differential Revision).
Jul 15 2019, 7:05 PM · MITK, Restricted Project
kalali committed rMITK45169a22abec: Enable changing the mouse mode via the configuration toolbar (authored by kalali).
Enable changing the mouse mode via the configuration toolbar
Jul 15 2019, 6:06 PM
kalali committed rMITK1f9bd5844acf: Enable changing the interaction scheme (authored by kalali).
Enable changing the interaction scheme
Jul 15 2019, 6:06 PM
kalali added a comment to T26490: [mxn multi widget] Enable MITK mouse mode and allow mode switching.

Pushed new branch T26490-Enable-MITK-mouse-mode-and-mode-switching.

Jul 15 2019, 6:05 PM · MITK, Restricted Project
kalali added a project to T26487: After changing colormap, cannot return to grayscale: Restricted Project.

The problem is with m_Type == type inside mitk::LookupTable::SetType. This variable is always GRAYSCALE when SetType is called inside the QmitkDataNodeColorMapAction. I guess this has something to do with the cloning of the lookup table.
I will take a closer look at this on Friday.

Jul 15 2019, 5:24 PM · Restricted Project, MITK
steint committed rMITKc295e27cb164: Merge branch 'T26290-extend-rest-api' (authored by steint).
Merge branch 'T26290-extend-rest-api'
Jul 15 2019, 3:19 PM
steint committed rMITK853f3eb23a8b: Fix temporary object error on linux (authored by steint).
Fix temporary object error on linux
Jul 15 2019, 3:18 PM
eisenman committed rMITK28881fa70be8: Test distortion level mapping for Polhemus tracking tools (authored by eisenman).
Test distortion level mapping for Polhemus tracking tools
Jul 15 2019, 3:15 PM
kislinsk committed rMITK77007566ef1e: Merge remote-tracking branch 'origin/master' into T25882-RewriteCTestScript (authored by kislinsk).
Merge remote-tracking branch 'origin/master' into T25882-RewriteCTestScript
Jul 15 2019, 12:26 PM
kislinsk committed rMITK39b2f11e8a2f: Fix URL (authored by kislinsk).
Fix URL
Jul 15 2019, 12:16 PM
kislinsk committed rMITKab189a335de3: Fix name of downloaded script (authored by kislinsk).
Fix name of downloaded script
Jul 15 2019, 11:56 AM
kislinsk committed rMITK0b8482351591: Separate script configuration from actual script (authored by kislinsk).
Separate script configuration from actual script
Jul 15 2019, 11:52 AM
kalali moved T26490: [mxn multi widget] Enable MITK mouse mode and allow mode switching from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Jul 15 2019, 11:18 AM · MITK, Restricted Project
steint committed rMITKdac6f9150fbb: Merge branch 'T26290-extend-rest-api' (authored by steint).
Merge branch 'T26290-extend-rest-api'
Jul 15 2019, 10:31 AM
steint committed rMITK8061f4c8c010: Add headers to requests Make request API broader Add client config (certificate… (authored by steint).
Add headers to requests Make request API broader Add client config (certificate…
Jul 15 2019, 10:29 AM
kislinsk committed rMITK886037a97879: Unify output (authored by kislinsk).
Unify output
Jul 15 2019, 10:19 AM
kislinsk closed T23948: Provide source code of Qt, a subtask of T23721: Project "Astonishing Angelfish", as Resolved.
Jul 15 2019, 9:37 AM · Request for Discussion, MITK (v2022.10)
kislinsk closed T23948: Provide source code of Qt as Resolved.

Oops, forgot to close, uploaded source code on April 30th here: http://mitk.org/download/thirdparty/qt-src/

Jul 15 2019, 9:37 AM · MITK
neher committed rMITKfa4f84b3e205: Update CTK to current master (authored by neher).
Update CTK to current master
Jul 15 2019, 9:15 AM
neher committed rMITK331994f7133f: Disable ctk app simplePythonSHell (not needed). Remove old PythonQt comment. (authored by neher).
Disable ctk app simplePythonSHell (not needed). Remove old PythonQt comment.
Jul 15 2019, 9:12 AM
kislinsk raised a concern with rMITKbf9d6a1ff701: Use --binary option.

Didn't check the implications of the binary option but if it simplify things without new quirks I'm in. However, why not simply change the PATCH_COMMAND variable to already include the binary option? We even could add -N -p -i as well as the command is used in the same way at each location.

Jul 15 2019, 7:19 AM

Jul 13 2019

neher committed rMITKbf9d6a1ff701: Use --binary option (authored by neher).
Use --binary option
Jul 13 2019, 11:56 AM
neher added a comment to T26501: Patching on windows fails.

Pushed new branch T26501-WinPatchBinary.

Jul 13 2019, 11:56 AM · Auto-closed, MITK
neher triaged T26501: Patching on windows fails as Normal priority.
Jul 13 2019, 11:55 AM · Auto-closed, MITK

Jul 12 2019

neher closed T26500: Move diffusion with python to seperate build config for windows as Resolved.
Jul 12 2019, 8:58 PM · MITK Diffusion
neher committed rMITKDIFF051d6741fd37: Merge branch 'T26499-WinPython' (authored by neher).
Merge branch 'T26499-WinPython'
Jul 12 2019, 8:58 PM
neher committed rMITKDIFF880be72dba6f: Enable python for standard release build config on windows (authored by neher).
Enable python for standard release build config on windows
Jul 12 2019, 8:57 PM
neher added a comment to T26500: Move diffusion with python to seperate build config for windows.

Pushed new branch T26500-WinPython.

Jul 12 2019, 8:57 PM · MITK Diffusion
neher triaged T26500: Move diffusion with python to seperate build config for windows as Normal priority.
Jul 12 2019, 8:56 PM · MITK Diffusion
neher added a comment to T26467: Update CTK.

Apparently now there is another issue with the imp module.
http://cdash.mitk.org/viewBuildError.php?buildid=698943

Jul 12 2019, 8:35 PM · MITK
eisenman added a comment to T26464: Incorporate distortion sensing information in tracking data.

As discussed in the Telco, option 1 is implemented and the original distortion level value can be accessed from PolhemusTool via the new DistortionLevel enumeration.

Jul 12 2019, 7:52 PM · Restricted Project, IGT, MITK
eisenman committed rMITK5bdf9656fa9b: Extract distortion sensing information from Polhemus Liberty response frame and… (authored by eisenman).
Extract distortion sensing information from Polhemus Liberty response frame and…
Jul 12 2019, 7:48 PM
eisenman committed rMITK8f1a5a815afc: Fix typos (authored by eisenman).
Fix typos
Jul 12 2019, 7:48 PM
eisenman added a comment to T26464: Incorporate distortion sensing information in tracking data.

Pushed new branch T26464-PolhemusLibertyDistortionSensingInformation.

Jul 12 2019, 7:47 PM · Restricted Project, IGT, MITK
kislinsk committed rMITKd1434cc8ea5b: Support colored output (authored by kislinsk).
Support colored output
Jul 12 2019, 4:42 PM
petersej added a member for Deep Learning: m167k.
Jul 12 2019, 2:52 PM
kislinsk changed the edit policy for Deep Learning.
Jul 12 2019, 2:49 PM
jungsi added a comment to T23742: Implement proof of concept for new segmentation data type.
  • Auflistung von Anforderungen!
  • Check
    • Dicom Derived Tag (verbinden der repräsentationen und originale) (Source)
    • Dicom Surface Segmentation
    • Source Entity und Image (Tags) Referenced Image and Instance Sequence
  • Bei Contour Tools Contours speichern
  • Mischen der Masterrepräsentationen in Anwendung und Speichern
  • Komplexität bei Arbeit mit binär und fractional (Toolunterstützung)
  • Wird ContourModel noch woanders verwendet? Noch aktuell?
  • Complexity Plugin
  • Tool defines what data works
  • Wishlist GUI abstrakt toolkitunabhängig definieren (Parameterdefinition)
Jul 12 2019, 2:34 PM · MITK
neher committed rMITKaaab7695d3f1: Update CTK to current master (authored by neher).
Update CTK to current master
Jul 12 2019, 1:36 PM
neher committed rMITK1eeb2ca8d61f: Update PythonQt (authored by neher).
Update PythonQt
Jul 12 2019, 1:25 PM
neher closed T26498: Diffusion cmdapps only output MITK git hash as Resolved.
Jul 12 2019, 9:57 AM · MITK, MITK Diffusion
neher committed rMITK03c21aff05a7: Merge branch 'T26498-DiffusionRevision' (authored by neher).
Merge branch 'T26498-DiffusionRevision'
Jul 12 2019, 9:56 AM
neher committed rMITKDIFFaf2a36c765ea: Merge branch 'T26498-GiffusionRevision' (authored by neher).
Merge branch 'T26498-GiffusionRevision'
Jul 12 2019, 9:55 AM
neher committed rMITKDIFFf38f97d7f248: Add mitkDiffusionVersion.h and overload command line parser (authored by neher).
Add mitkDiffusionVersion.h and overload command line parser
Jul 12 2019, 9:53 AM
neher added a comment to T26498: Diffusion cmdapps only output MITK git hash.

Pushed new branch T26498-GiffusionRevision.

Jul 12 2019, 9:53 AM · MITK, MITK Diffusion
neher committed rMITK5e37cfc808bf: Make member variables protected (authored by neher).
Make member variables protected
Jul 12 2019, 9:53 AM
neher added a comment to T26498: Diffusion cmdapps only output MITK git hash.

Pushed new branch T26498-DiffusionRevision.

Jul 12 2019, 9:52 AM · MITK, MITK Diffusion

Jul 11 2019

petersej added a member for trixi: m167k.
Jul 11 2019, 5:52 PM
floca added a comment to T23948: Provide source code of Qt.

@kislinsk Shouldn't we raise priority, if we run otherwise in a licesnsing gray zone?

Jul 11 2019, 5:14 PM · MITK
eisenman moved T26464: Incorporate distortion sensing information in tracking data from Backlog to In Progress on the IGT board.
Jul 11 2019, 3:38 PM · Restricted Project, IGT, MITK
m167k triaged T26499: Restore functionality of 3d histogram for NumpyVisdomLogger as Normal priority.
Jul 11 2019, 3:34 PM · trixi
neher added a comment to T26498: Diffusion cmdapps only output MITK git hash.

The has is located in mitkVersion.h, so probably the extension repositories need a similar header.

Jul 11 2019, 3:32 PM · MITK, MITK Diffusion
neher triaged T26498: Diffusion cmdapps only output MITK git hash as Normal priority.
Jul 11 2019, 3:31 PM · MITK, MITK Diffusion
groehl added a member for IMSY: gruber.
Jul 11 2019, 1:27 PM
kalali renamed T26490: [mxn multi widget] Enable MITK mouse mode and allow mode switching from PACS mode is not preferred, allow MITK mode in BlackSwan to [mxn multi widget] Enable MITK mouse mode and allow mode switching.
Jul 11 2019, 1:09 PM · MITK, Restricted Project
kalali added a comment to T26486: PACS mouse mode does not allow scrolling with mouse wheel.

Ok but the simple solution would be to re-enable the MITK mouse mode.
This task is more of a general discussion how the PACS mode should work, according to common PACSes.

Jul 11 2019, 1:07 PM · Breaking Change, MITK (v2021.10)
kalali moved T26486: PACS mouse mode does not allow scrolling with mouse wheel from Backlog to MITK Meeting on the Request for Discussion board.
Jul 11 2019, 11:50 AM · Breaking Change, MITK (v2021.10)
kleina triaged T26486: PACS mouse mode does not allow scrolling with mouse wheel as High priority.

According to Nina this is kind of a dealbreaker for her and really slows her down. I would give this one a high priority in BlackSwan context.

Jul 11 2019, 11:49 AM · Breaking Change, MITK (v2021.10)
kalali updated the task description for T25947: The data manager shows unreadable names.
Jul 11 2019, 11:19 AM · Request for Discussion, Restricted Project, MITK
kalali closed T24760: Restrictions and assumptions for the BlackSwan project, a subtask of T23758: Introduction of custom multi widget editor, as Invalid.
Jul 11 2019, 11:14 AM · Restricted Project, MITK
kalali closed T24760: Restrictions and assumptions for the BlackSwan project as Invalid.

We already got some feedback from users so this task is invalid. For the next version, check T26476.

Jul 11 2019, 11:14 AM · MITK
kalali added a parent task for T26496: [mxn multi widget] Re-initializations reset all render windows: Unknown Object (Maniphest Task).
Jul 11 2019, 11:10 AM · MITK (v2022.10), Restricted Project
kalali triaged T26496: [mxn multi widget] Re-initializations reset all render windows as High priority.
Jul 11 2019, 11:10 AM · MITK (v2022.10), Restricted Project
kalali renamed T26394: [Render window manager] Provide tree view / model from Provide tree view / model for the render window manager to [Render window manager] Provide tree view / model for the.
Jul 11 2019, 10:59 AM · MITK (v2023.04), Restricted Project
kalali removed a subtask for T25601: Modernize render window manager: T26394: [Render window manager] Provide tree view / model.
Jul 11 2019, 10:59 AM · Restricted Project, MITK
kalali edited parent tasks for T26394: [Render window manager] Provide tree view / model, added: Unknown Object (Maniphest Task); removed: T25601: Modernize render window manager.
Jul 11 2019, 10:59 AM · MITK (v2023.04), Restricted Project
kalali added a comment to T26394: [Render window manager] Provide tree view / model.

Sometimes adding a new segmentation will not show the segmentation -> layer / tree problem? Need to investigate further.

Jul 11 2019, 10:58 AM · MITK (v2023.04), Restricted Project
kalali added a parent task for T25947: The data manager shows unreadable names: Unknown Object (Maniphest Task).
Jul 11 2019, 10:53 AM · Request for Discussion, Restricted Project, MITK
kalali moved T25947: The data manager shows unreadable names from Backlog to MITK Meeting on the Request for Discussion board.
Jul 11 2019, 10:50 AM · Request for Discussion, Restricted Project, MITK
kalali renamed T25947: The data manager shows unreadable names from The data manager does not show the data node name anymore to The data manager shows unreadable names.
Jul 11 2019, 10:50 AM · Request for Discussion, Restricted Project, MITK
kalali moved T19477: Select which dicom tags are used to create a nodes name from Backlog to MITK Meeting on the Request for Discussion board.
Jul 11 2019, 10:50 AM · MITK (v2024.12), Request for Discussion, Bugzilla
kalali added a project to T19477: Select which dicom tags are used to create a nodes name: Request for Discussion.

I'd like to discuss this as I am currently not happy with the node naming of DICOM images. The names are totally unreadable and changing each node name is unnecessary. It would be easier to define a name pattern and have this applied for all current and future nodes of the MITK session.

Jul 11 2019, 10:50 AM · MITK (v2024.12), Request for Discussion, Bugzilla
kalali added a comment to T26487: After changing colormap, cannot return to grayscale.

I cannot reproduce this using Windows.
I can reproduce this using Ubuntu 18.04, gcc 7.4.0.

Jul 11 2019, 10:29 AM · Restricted Project, MITK
kalali added a parent task for T26485: [Segmentation] PACS mode is active while segmentation is drawn: Unknown Object (Maniphest Task).
Jul 11 2019, 10:25 AM · MITK (v2021.10)
kalali added a parent task for T26486: PACS mouse mode does not allow scrolling with mouse wheel: Unknown Object (Maniphest Task).
Jul 11 2019, 10:25 AM · Breaking Change, MITK (v2021.10)
kalali added a parent task for T26495: [mxn multi widget] Not able to chose level-window presets: Unknown Object (Maniphest Task).
Jul 11 2019, 10:24 AM · Restricted Project, MITK
kalali updated the task description for T26495: [mxn multi widget] Not able to chose level-window presets.
Jul 11 2019, 10:23 AM · Restricted Project, MITK
kalali triaged T26495: [mxn multi widget] Not able to chose level-window presets as Normal priority.
Jul 11 2019, 10:23 AM · Restricted Project, MITK
kalali added a parent task for T26494: [Render window manager] Change view to currently active render window: Unknown Object (Maniphest Task).
Jul 11 2019, 10:19 AM · Restricted Project, MITK
kalali triaged T26494: [Render window manager] Change view to currently active render window as Normal priority.
Jul 11 2019, 10:19 AM · Restricted Project, MITK
kalali added a parent task for T26493: [mxn multi widget] Allow render window resizing: Unknown Object (Maniphest Task).
Jul 11 2019, 10:16 AM · Restricted Project, MITK
kalali triaged T26493: [mxn multi widget] Allow render window resizing as Normal priority.
Jul 11 2019, 10:16 AM · Restricted Project, MITK
kalali added a comment to T25604: New concept for switching between different render windows.

Concerning the active render window see T26492.

Jul 11 2019, 10:11 AM · Auto-closed, Request for Discussion, Restricted Project, MITK
kalali added a parent task for T26492: [mxn multi widget] Send active render window: Unknown Object (Maniphest Task).
Jul 11 2019, 10:10 AM · Breaking Change, MITK (v2021.10)
kalali triaged T26492: [mxn multi widget] Send active render window as Normal priority.
Jul 11 2019, 10:09 AM · Breaking Change, MITK (v2021.10)
kalali updated the task description for T26490: [mxn multi widget] Enable MITK mouse mode and allow mode switching.
Jul 11 2019, 10:07 AM · MITK, Restricted Project
kalali added a parent task for T26491: [Render window manager] Node renaming is not allowed: Unknown Object (Maniphest Task).
Jul 11 2019, 10:04 AM · Restricted Project, MITK
kalali triaged T26491: [Render window manager] Node renaming is not allowed as Normal priority.
Jul 11 2019, 10:04 AM · Restricted Project, MITK
kalali created T26490: [mxn multi widget] Enable MITK mouse mode and allow mode switching.
Jul 11 2019, 9:59 AM · MITK, Restricted Project
reicht closed Restricted Maniphest Task, a subtask of T26299: [Webbased DICOM parsing and file handling], as Resolved.
Jul 11 2019, 9:55 AM · CSI-HD
reicht closed Restricted Maniphest Task, a subtask of T26299: [Webbased DICOM parsing and file handling], as Resolved.
Jul 11 2019, 9:47 AM · CSI-HD
reicht changed the visibility for T26299: [Webbased DICOM parsing and file handling].
Jul 11 2019, 9:44 AM · CSI-HD
steint added a comment to T26473: Optimize QmitkChartWidget interface.

I can see your point.

Jul 11 2019, 9:12 AM · Moved to git.dkfz.de, MITK