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Jul 31 2019

jsolislemus added a comment to T26451: DICOM plugin cannot parse DICOM directories in macOS installer.

I tried using the Logging as @floca suggested, however I am not familiar with what I should be looking for (attached MitkWorkbench_.log file). I tried downloading the MITK Workbench binaries corresponding to v2018.04.2 and got the same error, attaching the screenshot.

Jul 31 2019, 2:10 PM · MITK
kislinsk moved T25882: Rewrite dashboard script for CDash 2.6 from Backlog to Postpone on the MITK (2018-04-4) board.
Jul 31 2019, 1:29 PM · CI, MITK (v2021.02), Restricted Project
kislinsk moved T26237: Improve performance for interactions in 2d widgets from Backlog to Postpone on the MITK (2018-04-4) board.
Jul 31 2019, 1:28 PM · MITK
kislinsk moved T26427: Support software rendering from Backlog to Postpone on the MITK (2018-04-4) board.
Jul 31 2019, 1:28 PM · Auto-closed, MITK
neher triaged T26540: Warning as error in ultrasoundtrackingnavigation as High priority.
Jul 31 2019, 1:25 PM · IGT, MITK
jeyoganath added a comment to T25608: OpenCV example (view VideoPlayer, org.mitk.examples.gui.opencv) is not functional any more..

What is the current status on this task? Is the new example already integrated in the master or one of the release branches?

Jul 31 2019, 12:47 PM · Auto-closed, MITK, IGT
kislinsk closed T26537: CMake creates Debug/Release files instead of directories in MITK_BINARY_DIR/bin as Resolved.
Jul 31 2019, 12:29 PM · MITK
kislinsk committed rMITK13270076fbeb: Merge branch 'T26537-FilesInsteadOfDirectories' (authored by kislinsk).
Merge branch 'T26537-FilesInsteadOfDirectories'
Jul 31 2019, 12:29 PM
kislinsk added a comment to T26537: CMake creates Debug/Release files instead of directories in MITK_BINARY_DIR/bin.

Pushed new branch T26537-FilesInsteadOfDirectories.

Jul 31 2019, 12:28 PM · MITK
kislinsk triaged T26537: CMake creates Debug/Release files instead of directories in MITK_BINARY_DIR/bin as High priority.
Jul 31 2019, 12:26 PM · MITK
floca added a comment to T26451: DICOM plugin cannot parse DICOM directories in macOS installer.

It would be helpfull to see the log output in order to see if a different reader configuration was choosen and which. Please activate the log window and check the out put of the read process.

Jul 31 2019, 9:55 AM · MITK
kleina moved T26439: Extending embeddings.py with gensen and skipthought from In Progress to Review/Discussion on the NLP board.
Jul 31 2019, 9:49 AM · NLP
neher closed T26467: Update CTK as Resolved.
Jul 31 2019, 8:24 AM · MITK

Jul 30 2019

eisenman closed T26535: CMake raises a warning during configuration of MITK-IGT as Resolved.
Jul 30 2019, 7:12 PM · MITK, IGT
eisenman committed rMITK72faa3774603: Merge branch 'T26535-FixCMakeWarningInIGTConfig' (authored by eisenman).
Merge branch 'T26535-FixCMakeWarningInIGTConfig'
Jul 30 2019, 7:10 PM
eisenman added a comment to T26535: CMake raises a warning during configuration of MITK-IGT.

Pushed new branch T26535-FixCMakeWarningInIGTConfig.

Jul 30 2019, 7:00 PM · MITK, IGT
eisenman added a project to T26535: CMake raises a warning during configuration of MITK-IGT: MITK.
Jul 30 2019, 7:00 PM · MITK, IGT
eisenman moved T26535: CMake raises a warning during configuration of MITK-IGT from Backlog to In Progress on the IGT board.
Jul 30 2019, 6:27 PM · MITK, IGT
neher closed T26462: Refactor diffusion repository structure as Resolved.
Jul 30 2019, 4:48 PM · MITK Diffusion, MITK
eisenman triaged T26535: CMake raises a warning during configuration of MITK-IGT as Low priority.
Jul 30 2019, 3:59 PM · MITK, IGT
neher committed rMITK1d31d3dbc541: Update CTK to current master (authored by neher).
Update CTK to current master
Jul 30 2019, 3:08 PM
kislinsk closed T26525: Problem installing MITK 2018.04.2 + AIAA as Resolved.
Jul 30 2019, 2:58 PM · MITK
ivanwilliammd added a comment to T26525: Problem installing MITK 2018.04.2 + AIAA.

Thank you @kislinsk, I will continue the thread in AIAA Github

Jul 30 2019, 2:36 PM · MITK
kislinsk added a comment to T26525: Problem installing MITK 2018.04.2 + AIAA.

See our latest news items on mitk.org for links to documentation resources.

Jul 30 2019, 2:14 PM · MITK
steint committed rMITK5ca8b441c84e: Merge branch 'T26290-extend-rest-api' (authored by steint).
Merge branch 'T26290-extend-rest-api'
Jul 30 2019, 2:05 PM
ivanwilliammd triaged T26525: Problem installing MITK 2018.04.2 + AIAA as Normal priority.
Jul 30 2019, 2:01 PM · MITK
kislinsk committed rMITK9f4ecc883e50: Merge branch 'T17598-RemovePlanarFigureSegmentation' (authored by kislinsk).
Merge branch 'T17598-RemovePlanarFigureSegmentation'
Jul 30 2019, 12:38 PM
kislinsk closed T17598: Improvement of PlanarFigureSegmentation module for contours with strongly different sizes as Resolved.
Jul 30 2019, 12:38 PM · MITK, Bugzilla
kislinsk added a comment to T17598: Improvement of PlanarFigureSegmentation module for contours with strongly different sizes.

Pushed new branch T17598-RemovePlanarFigureSegmentation.

Jul 30 2019, 12:37 PM · MITK, Bugzilla
kislinsk closed T26521: Remove GPGPU module as Resolved.
Jul 30 2019, 12:32 PM · MITK
kislinsk committed rMITKcc00ad55eb0a: Merge branch 'T26521-RemoveGPGPUModule' (authored by kislinsk).
Merge branch 'T26521-RemoveGPGPUModule'
Jul 30 2019, 12:32 PM
kislinsk added a comment to T26521: Remove GPGPU module.

Pushed new branch T26521-RemoveGPGPUModule.

Jul 30 2019, 12:31 PM · MITK
kislinsk triaged T26521: Remove GPGPU module as Wishlist priority.
Jul 30 2019, 12:28 PM · MITK
kislinsk renamed T18723: Remove GLUT from Update freeglut to version 3.0, which has native CMake support to Remove GLUT.
Jul 30 2019, 12:28 PM · MITK, Bugzilla
kislinsk closed T19254: RDF: Design an error handling concept for RDF module as Invalid.
Jul 30 2019, 12:27 PM · MITK, Bugzilla
kislinsk closed T24194: Clean up QtWidgetsExt as Wontfix.
Jul 30 2019, 12:24 PM · Restricted Project
kislinsk closed T26520: Remove RDF module and Redland, Rasqal, Raptor2 dependencies as Resolved.
Jul 30 2019, 12:16 PM · MITK
kislinsk committed rMITK7fea10d328d9: Merge branch 'T26520-RemoveRDFAndDependencies' (authored by kislinsk).
Merge branch 'T26520-RemoveRDFAndDependencies'
Jul 30 2019, 12:16 PM
kislinsk added a comment to T26520: Remove RDF module and Redland, Rasqal, Raptor2 dependencies.

Pushed new branch T26520-RemoveRDFAndDependencies.

Jul 30 2019, 12:15 PM · MITK
kislinsk triaged T26520: Remove RDF module and Redland, Rasqal, Raptor2 dependencies as Wishlist priority.
Jul 30 2019, 12:09 PM · MITK
kislinsk closed Restricted Maniphest Task, a subtask of T23721: Project "Astonishing Angelfish", as Resolved.
Jul 30 2019, 12:08 PM · Request for Discussion, MITK (v2022.10)
kislinsk committed rMITK60a127d06c86: Merge branch 'T18723-RemoveGLUT' (authored by kislinsk).
Merge branch 'T18723-RemoveGLUT'
Jul 30 2019, 12:01 PM
kislinsk added a comment to T18723: Remove GLUT.

Pushed new branch T18723-RemoveGLUT.

Jul 30 2019, 12:00 PM · MITK, Bugzilla
kislinsk claimed T18723: Remove GLUT.
Jul 30 2019, 11:57 AM · MITK, Bugzilla
kislinsk added a comment to T18723: Remove GLUT.

Freeglut is not needed anymore and can be removed as dependency.

Jul 30 2019, 11:57 AM · MITK, Bugzilla
kislinsk closed T22654: Extending the Segmentation plugin with a multi-region threshold-based tool as Wontfix.

FYI: Nvidia used the new MITK extension mechanism to integrate their segmentation tools into MITK without touching the MITK source code.
https://github.com/NVIDIA/ai-assisted-annotation-client/tree/master/mitk-plugin

Jul 30 2019, 11:27 AM · Pull Request, MITK
kislinsk closed T25720: MITK last version without VMTK option as Invalid.

VMTK, as an experimental third-party dependency, was removed from MITK.

Jul 30 2019, 11:01 AM · MITK
kislinsk merged T25721: MITK last version without VMTK option into T25720: MITK last version without VMTK option.
Jul 30 2019, 11:00 AM · MITK
kislinsk merged task T25721: MITK last version without VMTK option into T25720: MITK last version without VMTK option.
Jul 30 2019, 11:00 AM · MITK
floca added a comment to T26033: Update ModelFit manual.

@kompan : Thanks! I think we should remove the arxiv version, as the final paper is open access to. Thanks.

Jul 30 2019, 9:21 AM · Restricted Project, MITK
neher closed T26517: ENable render window maneger in diffusion as Resolved.
Jul 30 2019, 8:57 AM · MITK Diffusion
neher committed rMITKDIFF6fa4f3a34f97: Merge branch 'T26517-EnableRenderWindowManager' (authored by neher).
Merge branch 'T26517-EnableRenderWindowManager'
Jul 30 2019, 8:52 AM
neher committed rMITKDIFF717140d853ff: Enabled corresponding view (authored by neher).
Enabled corresponding view
Jul 30 2019, 8:51 AM
neher added a comment to T26517: ENable render window maneger in diffusion.

Pushed new branch T26517-EnableRenderWindowManager.

Jul 30 2019, 8:51 AM · MITK Diffusion
kompan closed T26033: Update ModelFit manual as Resolved.
Jul 30 2019, 7:45 AM · Restricted Project, MITK

Jul 29 2019

kalali added members for SIDT: kislinsk, jungsi, steint, thomass.
Jul 29 2019, 4:32 PM
kalali removed a member for SIDT: s635r.
Jul 29 2019, 4:31 PM
neher added a comment to T26467: Update CTK.

Pushed new branch T26467-UpdateCtk2.

Jul 29 2019, 9:38 AM · MITK
neher triaged T26517: ENable render window maneger in diffusion as Wishlist priority.
Jul 29 2019, 9:34 AM · MITK Diffusion

Jul 26 2019

kalali closed T26491: [Render window manager] Node renaming is not allowed as Resolved.
Jul 26 2019, 5:05 PM · Restricted Project, MITK
kalali added a comment to T26491: [Render window manager] Node renaming is not allowed.

Pushed new branch T26491-Allow-node-renaming.

Jul 26 2019, 5:05 PM · Restricted Project, MITK
kalali claimed T26491: [Render window manager] Node renaming is not allowed.
Jul 26 2019, 12:56 PM · Restricted Project, MITK
kalali closed T26494: [Render window manager] Change view to currently active render window as Resolved.
Jul 26 2019, 12:54 PM · Restricted Project, MITK
kalali added a comment to T26494: [Render window manager] Change view to currently active render window.

Has been resolved in T26492.

Jul 26 2019, 12:54 PM · Restricted Project, MITK
kalali closed T26492: [mxn multi widget] Send active render window as Resolved.
Jul 26 2019, 12:51 PM · Breaking Change, MITK (v2021.10)
kalali added a comment to T26492: [mxn multi widget] Send active render window.

Pushed new branch T26492-Send-active-render-window.

Jul 26 2019, 12:50 PM · Breaking Change, MITK (v2021.10)

Jul 24 2019

kalali closed T24161: Common interface for Custom-/Std-Multi widget (editor), a subtask of T24215: Refactor classes to use the QmitkAbstractMultiWidget(Editor), as Resolved.
Jul 24 2019, 12:40 PM · Noteworthy, MITK
kalali closed T24161: Common interface for Custom-/Std-Multi widget (editor) as Resolved.

Branch has unpublished commits. Merging into T26492 to publish it.

Jul 24 2019, 12:40 PM · Restricted Project, MITK

Jul 23 2019

kalali renamed T26394: [Render window manager] Provide tree view / model from [Render window manager] Provide tree view / model for the to [Render window manager] Provide tree view / model.
Jul 23 2019, 2:40 PM · MITK (v2023.04), Restricted Project
kompan closed T25981: ModelFit: actualize/fix wiki page as Resolved.
Jul 23 2019, 8:50 AM · Restricted Project, Restricted Project, MITK

Jul 22 2019

kalali claimed T24161: Common interface for Custom-/Std-Multi widget (editor).
Jul 22 2019, 5:03 PM · Restricted Project, MITK
floca added a comment to T26473: Optimize QmitkChartWidget interface.

@steint I think I would have made it slightly different, but this is more a case of tast than hard facts (at least I have no good arguments against it right now ;).
So bottom line: We should go with the changes. Thanks. If we learn that something is missing, nothing stops us to revisit and refactor.

Jul 22 2019, 4:02 PM · Moved to git.dkfz.de, MITK
eisenman closed T26464: Incorporate distortion sensing information in tracking data as Resolved.
Jul 22 2019, 3:27 PM · Restricted Project, IGT, MITK
eisenman committed rMITK8df9b337939a: Merge branch 'T26464-PolhemusLibertyDistortionSensingInformation' (authored by eisenman).
Merge branch 'T26464-PolhemusLibertyDistortionSensingInformation'
Jul 22 2019, 3:17 PM
kompan committed rMITK1eed61c3d4d6: Rename mitkTestArtifactGenerator to mitkTestDynamicImageGenerator. (authored by kompan).
Rename mitkTestArtifactGenerator to mitkTestDynamicImageGenerator.
Jul 22 2019, 9:08 AM
kompan committed rMITK4ec99d65f137: Merge branch 'master' of https://phabricator.mitk.org/source/mitk (authored by kompan).
Merge branch 'master' of https://phabricator.mitk.org/source/mitk
Jul 22 2019, 9:08 AM

Jul 19 2019

kalali claimed T26492: [mxn multi widget] Send active render window.
Jul 19 2019, 4:19 PM · Breaking Change, MITK (v2021.10)
kalali added a comment to T26492: [mxn multi widget] Send active render window.

The active render window inside the multi widget editor is only set if the layout is changed.
It needs to be set if the user interacts with the render window.

Jul 19 2019, 4:19 PM · Breaking Change, MITK (v2021.10)
steint added a comment to T26473: Optimize QmitkChartWidget interface.

@floca Do you agree?

Jul 19 2019, 3:51 PM · Moved to git.dkfz.de, MITK
steint added a comment to T26070: Stacked Data ignores set chart type.

Stacked bar charts are also supported, but handled differently than stacked area charts.

Jul 19 2019, 3:37 PM · Auto-closed, Restricted Project, MITK
steint committed rMITKd0cae88bc4df: Add missing existing label check (authored by steint).
Add missing existing label check
Jul 19 2019, 3:17 PM
kalali closed T26490: [mxn multi widget] Enable MITK mouse mode and allow mode switching as Resolved.
Jul 19 2019, 3:04 PM · MITK, Restricted Project
kislinsk committed rMITK1a3fa6c51140: Make Git calls more convenient and improve revision info (authored by kislinsk).
Make Git calls more convenient and improve revision info
Jul 19 2019, 3:02 PM
steint committed rMITKa7b0acfb472e: Interface extension for chart widget: UpdateData (authored by steint).
Interface extension for chart widget: UpdateData
Jul 19 2019, 3:01 PM
kalali committed rMITK6e4f328a4a22: Enable MITK mouse mode and allow mode switching (authored by kalali).
Enable MITK mouse mode and allow mode switching
Jul 19 2019, 3:00 PM
kalali committed rMITKc49c3cc67d23: Add function description (authored by kalali).
Add function description
Jul 19 2019, 3:00 PM
kalali committed rMITKbfcae17d3b8c: Add default interaction scheme (authored by kalali).
Add default interaction scheme
Jul 19 2019, 3:00 PM
kalali committed rMITK2f9722e259e2: Add exception if interaction event handler is not valid (authored by kalali).
Add exception if interaction event handler is not valid
Jul 19 2019, 3:00 PM
steint added a comment to T26473: Optimize QmitkChartWidget interface.

Pushed new branch T26473-optimize-chart-widget-interface.

Jul 19 2019, 3:00 PM · Moved to git.dkfz.de, MITK
kalali closed T26487: After changing colormap, cannot return to grayscale as Resolved.
Jul 19 2019, 1:18 PM · Restricted Project, MITK
kalali committed rMITK9e687a1442ba: Initialize data members using the copy constructor (authored by kalali).
Initialize data members using the copy constructor
Jul 19 2019, 1:18 PM
kalali committed rMITK36bfa18f0d2b: Initialize data members using the copy constructor (authored by kalali).
Initialize data members using the copy constructor
Jul 19 2019, 1:18 PM
zimmerer closed T25853: Auto-start does not work with visdom version 0.1.8.8 as Resolved.
Jul 19 2019, 12:20 PM · trixi
kalali added a revision to T26487: After changing colormap, cannot return to grayscale: Unknown Object (Differential Revision).
Jul 19 2019, 12:16 PM · Restricted Project, MITK
floca updated subscribers of T26033: Update ModelFit manual.

@kompan: Could you be so kind and take care when you have some time left? Thanks!

Jul 19 2019, 12:15 PM · Restricted Project, MITK
floca updated subscribers of T25981: ModelFit: actualize/fix wiki page.

@kompan: Could you be so kind and take care when you have some time left?

Jul 19 2019, 12:14 PM · Restricted Project, Restricted Project, MITK
steint committed rMITK35f9c9cd4250: Merge branch 'T26348-fix-planar-figure-out-of-image' (authored by steint).
Merge branch 'T26348-fix-planar-figure-out-of-image'
Jul 19 2019, 12:01 PM
steint committed rMITK5e76f564c825: Fixed linux errors. (authored by steint).
Fixed linux errors.
Jul 19 2019, 11:58 AM
zimmerer triaged T26509: Give warning in trixi-browser if experiment could not be removed (e.g. write access) as Low priority.
Jul 19 2019, 11:22 AM · trixi
kislinsk removed a project from T26486: PACS mouse mode does not allow scrolling with mouse wheel: Request for Discussion.
Jul 19 2019, 11:15 AM · Breaking Change, MITK (v2021.10)