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Oct 11 2019

kislinsk added a member for Mint Medical GmbH: hentsch.
Oct 11 2019, 11:27 AM
kislinsk removed a member for MITK: hentsch.
Oct 11 2019, 11:23 AM
m167k added a member for trixi: d246a.
Oct 11 2019, 9:24 AM

Oct 10 2019

floca moved T23742: Implement proof of concept for new segmentation data type from Backlog to MITK Meeting on the Request for Discussion board.
Oct 10 2019, 9:52 PM · MITK
kislinsk added a comment to T26721: Prepare Qt 5.13 compatibility.

We need to fix CTK as well.

Oct 10 2019, 4:31 PM · MITK
kislinsk added a comment to T26721: Prepare Qt 5.13 compatibility.

Pushed new branch T26721-Qt-5.13.

Oct 10 2019, 4:30 PM · MITK
fvdnabee added a comment to T26736: Starting second MITK instance fails under GNU/Linux.

Note: on another computer (running Ubuntu + 1080ti's with nvidia 430.50 drivers), MITK with newInstance also falls backs to a non core profile but the second instance does start successfully.
I'm thinking that maybe my system is missing a library or that it is related to the MESA drivers for intel's UHD?

Oct 10 2019, 12:51 PM · Auto-closed, MITK
fvdnabee created T26736: Starting second MITK instance fails under GNU/Linux.
Oct 10 2019, 12:20 PM · Auto-closed, MITK
kislinsk claimed T26721: Prepare Qt 5.13 compatibility.

At least on Windows the Qt 5.13.1 CMake scripts do not work when trying to find Qt5UiTools as the script isn't able to find the release and debug library paths of Qt5Core. I had to manually set the corresponding CMake variables in the MITK-superbuild, the CTK-superbuild, the CTK-build, and the MITK-build.

Oct 10 2019, 11:17 AM · MITK
kislinsk merged task T26720: Fix build problems with Qt 5.13 into T26721: Prepare Qt 5.13 compatibility.
Oct 10 2019, 11:14 AM
kislinsk merged T26720: Fix build problems with Qt 5.13 into T26721: Prepare Qt 5.13 compatibility.
Oct 10 2019, 11:14 AM · MITK
kislinsk closed T26728: Fix macOS 10.15 compiler errors as Resolved.
Oct 10 2019, 11:13 AM · MITK

Oct 8 2019

kislinsk added a comment to T26728: Fix macOS 10.15 compiler errors.

Pushed new branch T26728-macOS-10.15.

Oct 8 2019, 5:16 PM · MITK
kislinsk triaged T26728: Fix macOS 10.15 compiler errors as Normal priority.
Oct 8 2019, 5:08 PM · MITK
kalali added a comment to T26727: Change dependent files to work with the new concept.

Pushed new branch T26727-Change-stdmultiwidget-dependent-files.

Oct 8 2019, 4:02 PM · Noteworthy, MITK

Oct 7 2019

kalali triaged T26727: Change dependent files to work with the new concept as Normal priority.
Oct 7 2019, 7:56 PM · Noteworthy, MITK

Oct 4 2019

floca added a comment to T26463: MatchPoint Registration Manipulator Segmentation Fault.

@isensee

  1. Does it work if you select two normal images (not segmentations)?
  2. Does the seg fault also happens if you use the Registration Evaluator plugin with the image and the segmentation?
  3. Could you provied example data, please?
Oct 4 2019, 3:34 PM · MITK
kalali added a project to T25930: [Segmentation] Fill/Erase crashes at non-zero timestep / Issue with ArbitraryTimeGeometry: Restricted Project.

Also if checking validity, consider T24766.

Oct 4 2019, 11:07 AM · MITK, Restricted Project
kalali added a project to T25725: "Show in" action is currently not implemented: Restricted Project.
Oct 4 2019, 10:22 AM · MITK (v2022.10)

Oct 2 2019

floca closed T26698: Perfusion Curve Description Parameters View- no time series selectable as Resolved.
Oct 2 2019, 5:34 PM · MITK
floca committed rMITKc41303acbd40: Merge branch 'T26698-PerfusionCurveDescription_data_not_selectable' (authored by floca).
Merge branch 'T26698-PerfusionCurveDescription_data_not_selectable'
Oct 2 2019, 5:33 PM
floca added a comment to T26698: Perfusion Curve Description Parameters View- no time series selectable.

Pushed new branch T26698-PerfusionCurveDescription_data_not_selectable.

Oct 2 2019, 5:32 PM · MITK
floca claimed T26698: Perfusion Curve Description Parameters View- no time series selectable.
Oct 2 2019, 5:30 PM · MITK
nolden triaged T26721: Prepare Qt 5.13 compatibility as Low priority.
Oct 2 2019, 1:54 PM · MITK

Oct 1 2019

nolden created T26720: Fix build problems with Qt 5.13.
Oct 1 2019, 4:04 PM
schererj added a member for Kaapana (internal): graf.
Oct 1 2019, 1:27 PM

Sep 30 2019

nolden added a revision to T26431: Fix gcc 9 and clang 8 compilation: Unknown Object (Differential Revision).
Sep 30 2019, 4:34 PM · MITK
hettich added a comment to T19347: Direction of crosshair orientation decoration.

This is still inconsistent, see screenshots:

LPS_Deco_Bildschirmfoto_2019-09-30_13-44-19.png (1×3 px, 235 KB)

Sep 30 2019, 3:37 PM · MITK, Bugzilla
nolden committed rMITK1a5a833c568b: Fixed Python 3.7 build errors and some warnings (authored by nolden).
Fixed Python 3.7 build errors and some warnings
Sep 30 2019, 1:20 PM
nolden committed rMITK6fc185bd8f1f: Fixed some exception catch warnings (authored by nolden).
Fixed some exception catch warnings
Sep 30 2019, 1:20 PM
nolden committed rMITK14e2a7bd2858: Fixed exception catch warnings (authored by nolden).
Fixed exception catch warnings
Sep 30 2019, 1:20 PM
nolden committed rMITKbda8c3526996: Don't treat cast function warnings as errors (authored by nolden).
Don't treat cast function warnings as errors
Sep 30 2019, 1:20 PM
nolden committed rMITKc83dbd285d90: Fixed threads related python build error (authored by nolden).
Fixed threads related python build error
Sep 30 2019, 1:20 PM
nolden committed rMITK4080d473bc81: Fixed warnings in exception handling (authored by nolden).
Fixed warnings in exception handling
Sep 30 2019, 1:20 PM

Sep 27 2019

eisenman moved T26563: Workbench crashes when freeze button in spacing calibration tab is clicked from Backlog to Finished on the IGT board.
Sep 27 2019, 4:28 PM · IGT, MITK
eisenman closed T26563: Workbench crashes when freeze button in spacing calibration tab is clicked as Resolved.
Sep 27 2019, 4:28 PM · IGT, MITK
eisenman committed rMITK8c1591700541: Merge branch 'T26563-FreezeButtonCrash' (authored by eisenman).
Merge branch 'T26563-FreezeButtonCrash'
Sep 27 2019, 4:27 PM
eisenman added a comment to T26563: Workbench crashes when freeze button in spacing calibration tab is clicked.

Pushed new branch T26563-FreezeButtonCrash.

Sep 27 2019, 4:25 PM · IGT, MITK
petersej added a parent task for T24694: Make plots in experiment view removable: T25582: Rewrite trixi in React.
Sep 27 2019, 2:42 PM · trixi
petersej added a parent task for T25300: Collapse/Expand sub configs tables in experiment browser comparison (and only show sub keys): T25582: Rewrite trixi in React.
Sep 27 2019, 2:42 PM · trixi
petersej added a parent task for T24831: Load javascript libraries via npm: T25582: Rewrite trixi in React.
Sep 27 2019, 2:42 PM · trixi, Restricted Project
petersej added subtasks for T25582: Rewrite trixi in React: T25300: Collapse/Expand sub configs tables in experiment browser comparison (and only show sub keys), T24831: Load javascript libraries via npm, T24694: Make plots in experiment view removable.
Sep 27 2019, 2:42 PM · Restricted Project, trixi
petersej added a comment to T24694: Make plots in experiment view removable.

Option for browser rewrite T25582

Sep 27 2019, 2:40 PM · trixi
petersej added a comment to T24831: Load javascript libraries via npm.

Do this on first startup of browser/implement module check in browser?

Sep 27 2019, 2:39 PM · trixi, Restricted Project
petersej added a comment to T25300: Collapse/Expand sub configs tables in experiment browser comparison (and only show sub keys).

Do this for browser rewrite T25582

Sep 27 2019, 2:37 PM · trixi
petersej added a subtask for T25582: Rewrite trixi in React: Unknown Object (Maniphest Task).
Sep 27 2019, 2:23 PM · Restricted Project, trixi
eisenman claimed T26563: Workbench crashes when freeze button in spacing calibration tab is clicked.
Sep 27 2019, 11:48 AM · IGT, MITK
floca removed a project from T24710: Check failing dicom data in MITK-Data: Request for Discussion.

We have discussed, how to proceed with corrupted images (see above).

Sep 27 2019, 11:39 AM · DICOM, Restricted Project, MITK
eisenman added a comment to T24919: Unhandled exception raised when enabling tool projection.

Could you please set the status to resolved if the branch is merged?

Sep 27 2019, 11:30 AM · MITK, IGT

Sep 26 2019

kislinsk removed a watcher for MITK: thkim.
Sep 26 2019, 2:11 PM
kislinsk removed a watcher for MITK: azias.
Sep 26 2019, 2:11 PM

Sep 25 2019

kalali closed T26276: Segmentation created for multiple timepoints on 3D+t images as Resolved.
Sep 25 2019, 3:46 PM · MITK
kalali closed T26276: Segmentation created for multiple timepoints on 3D+t images, a subtask of T24766: Last time step of 3D+t data with arbitrary time geometry not selectable by image navigator spinbox, as Resolved.
Sep 25 2019, 3:46 PM · MITK
kalali closed T24766: Last time step of 3D+t data with arbitrary time geometry not selectable by image navigator spinbox as Resolved.
Sep 25 2019, 3:42 PM · MITK
kislinsk changed the edit policy for CI.
Sep 25 2019, 3:16 PM
floca added a project to T24710: Check failing dicom data in MITK-Data: Request for Discussion.

I looked into all DICOM images that make this problems and are located in the DICOMReader/ directory.

Sep 25 2019, 2:21 PM · DICOM, Restricted Project, MITK
kislinsk updated the task description for T26702: Support mosaic images.
Sep 25 2019, 9:31 AM · Auto-closed, MITK
kislinsk updated subscribers of T26702: Support mosaic images.
Sep 25 2019, 9:30 AM · Auto-closed, MITK

Sep 24 2019

kislinsk added a comment to T26702: Support mosaic images.

More information on Siemens Mosaic Images, see: https://nipy.org/nibabel/dicom/spm_dicom.html

Sep 24 2019, 4:08 PM · Auto-closed, MITK
nolden added a revision to T26701: Build errors with Python 3.7 and latest gcc: Unknown Object (Differential Revision).
Sep 24 2019, 2:28 PM · MITK
kislinsk updated subscribers of T26702: Support mosaic images.

Example data is located in E230-Daten/MITK.

Sep 24 2019, 10:49 AM · Auto-closed, MITK
kislinsk updated subscribers of T26702: Support mosaic images.
Sep 24 2019, 10:47 AM · Auto-closed, MITK
kislinsk claimed T26702: Support mosaic images.
Sep 24 2019, 10:45 AM · Auto-closed, MITK
kislinsk triaged T26702: Support mosaic images as Wishlist priority.
Sep 24 2019, 10:44 AM · Auto-closed, MITK
nolden added a comment to T26701: Build errors with Python 3.7 and latest gcc.

Possible fix is a reordering of includes in mitkPythonService.h , I could not find out exactly what's wrong.

Sep 24 2019, 10:38 AM · MITK
nolden triaged T26701: Build errors with Python 3.7 and latest gcc as High priority.
Sep 24 2019, 10:29 AM · MITK

Sep 23 2019

kalali added a project to T22838: Provide Jenkinsfile for CI: CI.
Sep 23 2019, 3:16 PM · CI, Restricted Project, MITK
kalali added a project to T24536: Create more Nightlies with minimum configuration etc.: CI.
Sep 23 2019, 3:15 PM · Auto-closed, CI, MITK
kompan triaged T26698: Perfusion Curve Description Parameters View- no time series selectable as Normal priority.
Sep 23 2019, 11:11 AM · MITK
kislinsk updated kislinsk.
Sep 23 2019, 9:02 AM
kislinsk updated kislinsk.
Sep 23 2019, 9:02 AM
kislinsk updated kislinsk.
Sep 23 2019, 9:01 AM

Sep 20 2019

jsolislemus added a comment to T26451: DICOM plugin cannot parse DICOM directories in macOS installer.

On computer A our own built (and packaged) work well.

Sep 20 2019, 4:34 PM · MITK
neher committed rMITKDIFF8b68094dc001: Merge branch 'T26696-IVIM-GUI' (authored by neher).
Merge branch 'T26696-IVIM-GUI'
Sep 20 2019, 10:49 AM
neher committed rMITKDIFF138312bffe06: Update gui (authored by neher).
Update gui
Sep 20 2019, 10:49 AM
neher added a comment to T26696: Refactor IVIM GUI.

Pushed new branch T26696-IVIM-GUI.

Sep 20 2019, 10:49 AM · MITK Diffusion
neher triaged T26696: Refactor IVIM GUI as Normal priority.
Sep 20 2019, 10:47 AM · MITK Diffusion
kislinsk added a parent task for T26276: Segmentation created for multiple timepoints on 3D+t images: T24766: Last time step of 3D+t data with arbitrary time geometry not selectable by image navigator spinbox.
Sep 20 2019, 4:21 AM · MITK
kislinsk added a subtask for T24766: Last time step of 3D+t data with arbitrary time geometry not selectable by image navigator spinbox: T26276: Segmentation created for multiple timepoints on 3D+t images.
Sep 20 2019, 4:21 AM · MITK
kislinsk added a comment to T24766: Last time step of 3D+t data with arbitrary time geometry not selectable by image navigator spinbox.

@kalali Resolved?

Sep 20 2019, 4:20 AM · MITK
kislinsk created CI.
Sep 20 2019, 4:09 AM

Sep 19 2019

floca added a comment to T26269: [image statistics plugin] refactor to use new node selection widget.

The widget still can't tell if the selected mask fits the selected image, which can cause errors.

May be I missed the point. But it is de facto possible.
You can already define a filter predicate and you can specify a filter/check lambda. Both ways would allow to control if the geometries fit or not. These techiques should be used. If you have any questions, please ask.

Sep 19 2019, 3:46 PM · MITK
floca added a comment to T26694: [image statistics plugin] Add multithreading .

I wouldn't value the node name of statistic nodes that high, as it has questionable importance/value.

  1. It is an open discussion if the statistic nodes should be visible at all in the data managers/storage inspectors. I currently tend to declare them as helpernodes that are not visible any ways.
  2. The name is not needed for the statistics view. For relations we use the relation rules.
  3. Name properties of nodes must not be "stable"; e.g. the name of an image node could change and then it would not fit any more to the image name encoded in the statistic node name.
Sep 19 2019, 3:28 PM · MITK
kraeuter added a comment to T26694: [image statistics plugin] Add multithreading .

The statistic nodes aren't named properly.
All statistic nodes are named after the last thread started, in a small selection they are all named the same.

Sep 19 2019, 3:12 PM · MITK
kraeuter added a comment to T26269: [image statistics plugin] refactor to use new node selection widget.

The widget still can't tell if the selected mask fits the selected image, which can cause errors.

Sep 19 2019, 3:04 PM · MITK
kraeuter added a comment to T26694: [image statistics plugin] Add multithreading .

Pushed new branch T26694-AddMultiThreading.

Sep 19 2019, 2:57 PM · MITK
kraeuter triaged T26694: [image statistics plugin] Add multithreading as Normal priority.
Sep 19 2019, 2:54 PM · MITK

Sep 18 2019

kirchnth closed T26690: Photoacoustic Image Processing has WarningsAsErrors with gcc as Resolved.

this should do it

Sep 18 2019, 6:09 PM · Photoacoustics, MITK
kirchnth committed rMITKfc81837e4f63: Merge branch 'T26690-fixPAgccWarningsInCommandLineToolToo' (authored by kirchnth).
Merge branch 'T26690-fixPAgccWarningsInCommandLineToolToo'
Sep 18 2019, 6:00 PM
kirchnth added a comment to T26690: Photoacoustic Image Processing has WarningsAsErrors with gcc.

Pushed new branch T26690-fixPAgccWarningsInCommandLineToolToo.

Sep 18 2019, 5:59 PM · Photoacoustics, MITK
kirchnth committed rMITK3d0bcd2006c5: Merge branch 'T26690-fixPAgccWarnings' (authored by kirchnth).
Merge branch 'T26690-fixPAgccWarnings'
Sep 18 2019, 5:38 PM
kirchnth added a comment to T26690: Photoacoustic Image Processing has WarningsAsErrors with gcc.

Pushed new branch T26690-fixPAgccWarnings.

Sep 18 2019, 5:37 PM · Photoacoustics, MITK
kirchnth triaged T26690: Photoacoustic Image Processing has WarningsAsErrors with gcc as High priority.
Sep 18 2019, 4:31 PM · Photoacoustics, MITK
eisenman closed T26689: Make annotation radius configurable via UI as Resolved.
Sep 18 2019, 2:05 PM · Restricted Project, IMSY
eisenman closed T26687: Export annotation center points in pixel coordinates as Resolved.
Sep 18 2019, 2:05 PM · Restricted Project, IMSY
eisenman added a comment to T26689: Make annotation radius configurable via UI.

Pushed new branch T26689-MakeAnnotationRadiusConfigurable.

Sep 18 2019, 2:03 PM · Restricted Project, IMSY
eisenman triaged T26689: Make annotation radius configurable via UI as High priority.
Sep 18 2019, 1:34 PM · Restricted Project, IMSY
sattler committed rMITK881636b85baf: Merge branch 'T26658-Transducers_smallFix' (authored by sattler).
Merge branch 'T26658-Transducers_smallFix'
Sep 18 2019, 1:01 PM
sattler committed rMITK200cddfe5017: Merge branch 'T26658-Transducers_smallFix' (authored by sattler).
Merge branch 'T26658-Transducers_smallFix'
Sep 18 2019, 11:59 AM
sattler added a comment to T26658: Implement beamforming in MITK for curved transducers.

Pushed new branch T26658-Transducers_smallFix.

Sep 18 2019, 11:58 AM · MITK, Photoacoustics