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Dec 6 2019

kislinsk committed rMITK385425e1a97f: Make license recognizable by GitHub (authored by kislinsk).
Make license recognizable by GitHub
Dec 6 2019, 1:51 PM
kislinsk added a comment to T26893: GitHub doesn't recognize our license.

Pushed new branch T26893-GitHubCompatibleLicenseFile.

Dec 6 2019, 1:51 PM · MITK
zimmerer committed rVAEe7ae6475e091: 'Fixed' Readme again due to some Readme DKFZ License rules (authored by zimmerer).
'Fixed' Readme again due to some Readme DKFZ License rules
Dec 6 2019, 1:32 PM
zimmerer committed rVAEa5375acfad21: 'Fix readme' (authored by zimmerer).
'Fix readme'
Dec 6 2019, 11:32 AM
ramien committed rREGRCNN2457655bb3dd: retina net anchor match fix (authored by ramien).
retina net anchor match fix
Dec 6 2019, 10:15 AM
kislinsk removed a project from T16153: Jump to center of mass of segmentation on click: Request for Discussion.

We decided in the MITK meeting that is a complex issue regarding UI-integration at other places as soon as you have multi-label segmentations. That's why we propose to keep the functionality at your plugin for the moment.

Dec 6 2019, 9:57 AM · Bugzilla, MITK
kislinsk removed a project from T26712: DICOM StructuredReport export for planar figures - right place for the contribution: Request for Discussion.
Dec 6 2019, 9:47 AM · d:cipher, MITK
kislinsk removed a project from T26451: DICOM plugin cannot parse DICOM directories in macOS installer: Request for Discussion.

We came to the conclusion that we need example data to reproduce this issue on our site. Can we arrange a transfer (see above)?

Dec 6 2019, 9:46 AM · MITK (2018-04-4)

Dec 5 2019

floca added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

I have the same error on my local Ubuntu VM. But only if configure via CMake command line. If I use the CMake gui and set the same values, then everything works fine.
Generator does not matter I have the problem with make and ninja; with one and multiple jobs.

Dec 5 2019, 9:39 PM · MITK
kalali added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

Using my local windows I get the output message:

CUSTOMBUILD : CMake warning :  [D:\MITK-BSQ\build2\CTK.vcxproj]
    Manually-specified variables were not used by the project:
Dec 5 2019, 5:52 PM · MITK
ramien committed rREGRCNNe2039681daf6: seg default bugs, searching (authored by ramien).
seg default bugs, searching
Dec 5 2019, 4:57 PM
ramien committed rREGRCNN9746f1e42b8a: tracking exit hangup related matplotlib (authored by ramien).
tracking exit hangup related matplotlib
Dec 5 2019, 4:57 PM
ramien committed rREGRCNN0343afe3cad2: undefault sysmetrics logging (authored by ramien).
undefault sysmetrics logging
Dec 5 2019, 4:57 PM
ramien committed rREGRCNNf3478c69ac26: shorter --dev cycle (authored by ramien).
shorter --dev cycle
Dec 5 2019, 4:57 PM
kleina committed rOBSHYPPOPYff89adc44f40: Updated readme (License and project description). (authored by kleina).
Updated readme (License and project description).
Dec 5 2019, 3:19 PM
kalali added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

Happens with VM and Azure. Local windows works (for now).

Dec 5 2019, 2:08 PM · MITK
kislinsk committed rMITKeb0b237d7c3e: Merge branch 'T26888-FixUpBundleWritePermissionsOnMacOS' (authored by kislinsk).
Merge branch 'T26888-FixUpBundleWritePermissionsOnMacOS'
Dec 5 2019, 1:30 PM
kislinsk committed rMITKe7aa9ff9efc7: Mark bundle items writable before calling install_name_tool (authored by kislinsk).
Mark bundle items writable before calling install_name_tool
Dec 5 2019, 1:28 PM
kislinsk added a comment to T26888: MITK_BUILD_CONFIGURATION "All" reveals some failing tests on CI build clients.

Pushed new branch T26888-FixUpBundleWritePermissionsOnMacOS.

Dec 5 2019, 1:28 PM · MITK
zimmerer committed rVAE3bba2f0e57a0: Create README.md (authored by zimmerer).
Create README.md
Dec 5 2019, 11:39 AM
kalali added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

Well, first time works.

Dec 5 2019, 10:25 AM · MITK
kislinsk added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

Maybe Git is not in PATH?

Dec 5 2019, 10:23 AM · MITK
kalali triaged T26897: Build error: Could not find git for clone of qRestAPI as Normal priority.
Dec 5 2019, 10:08 AM · MITK
neher triaged T26896: Fix tractseg as Normal priority.
Dec 5 2019, 9:56 AM · MITK Diffusion
neher closed T26895: Update readme as Resolved.
Dec 5 2019, 9:47 AM · MITK Diffusion
neher committed rMITKDIFF3ff5d3765612: Merge branch 'T26895-Readme' (authored by neher).
Merge branch 'T26895-Readme'
Dec 5 2019, 9:45 AM
neher committed rMITKDIFF7127f8d4460c: Readme update (authored by neher).
Readme update
Dec 5 2019, 9:44 AM
neher committed rMITKDIFFf2ecff53c0a2: Merge branch 'T26895-Readme' (authored by neher).
Merge branch 'T26895-Readme'
Dec 5 2019, 9:40 AM
neher committed rMITKDIFF718ed27e97c4: Updated readme and moved python requirements (authored by neher).
Updated readme and moved python requirements
Dec 5 2019, 9:40 AM
neher added a comment to T26895: Update readme.

Pushed new branch T26895-Readme.

Dec 5 2019, 9:40 AM · MITK Diffusion
neher created T26895: Update readme.
Dec 5 2019, 9:39 AM · MITK Diffusion
neher closed T26894: Adjust copyright notice in headers as Resolved.
Dec 5 2019, 9:39 AM · MITK Diffusion
neher committed rMITKDIFF308f897735b8: Merge branch 'T26894-Copyright' (authored by neher).
Merge branch 'T26894-Copyright'
Dec 5 2019, 9:29 AM
neher committed rMITKDIFF61f9998dc554: MBI -> MIC (authored by neher).
MBI -> MIC
Dec 5 2019, 9:28 AM
neher added a comment to T26894: Adjust copyright notice in headers.

Pushed new branch T26894-Copyright.

Dec 5 2019, 9:28 AM · MITK Diffusion
neher triaged T26894: Adjust copyright notice in headers as Normal priority.
Dec 5 2019, 9:27 AM · MITK Diffusion
kislinsk triaged T26893: GitHub doesn't recognize our license as Normal priority.
Dec 5 2019, 9:13 AM · MITK

Dec 4 2019

kislinsk committed rMITK78a8dc37f609: Merge branch 'T25256-UnifyLicenseAndCopyright' (authored by kislinsk).
Merge branch 'T25256-UnifyLicenseAndCopyright'
Dec 4 2019, 11:53 PM
kislinsk committed rMITKce5dc8011723: Unified license text and copyright headers (authored by kislinsk).
Unified license text and copyright headers
Dec 4 2019, 11:53 PM
kislinsk added a comment to T26501: Patching on windows fails.

This happens on Windows systems with the wrong checkout type for line endings. So not really a bug. We should investigate if the binary option is worth it anyway, as it is currently a big hassle to get patches right in the first place on Windows.

Dec 4 2019, 11:38 PM · MITK
kislinsk closed T26889: OpenIGTLink does not link on Linux with CMake 3.16 as Wontfix.

Will be fixed in CMake 3.16.1.

Dec 4 2019, 11:31 PM · MITK
kislinsk added a comment to T25256: MITK license file features "Division of Medical and Biological Informatics".
Dec 4 2019, 6:41 PM · MITK
kislinsk committed rMITK12e52aeac5c9: Merge branch 'T25256-UnifyLicenseAndCopyright' (authored by kislinsk).
Merge branch 'T25256-UnifyLicenseAndCopyright'
Dec 4 2019, 6:40 PM
kislinsk committed rMITK1d57ec84fc1d: Unified license text and copyright headers (authored by kislinsk).
Unified license text and copyright headers
Dec 4 2019, 6:39 PM
kislinsk added a comment to T25256: MITK license file features "Division of Medical and Biological Informatics".

Pushed new branch T25256-UnifyLicenseAndCopyright.

Dec 4 2019, 6:38 PM · MITK
kislinsk claimed T25256: MITK license file features "Division of Medical and Biological Informatics".
Dec 4 2019, 5:32 PM · MITK
ramien committed rREGRCNN3cd3a9218a9e: readme fix (authored by ramien).
readme fix
Dec 4 2019, 11:39 AM
ramien committed rREGRCNN8e121ec75cb3: readme fix (authored by ramien).
readme fix
Dec 4 2019, 11:39 AM
jaegerp committed rMDTPUBLICe52b6dc867ba: update copyright in readme (authored by jaegerp).
update copyright in readme
Dec 4 2019, 10:47 AM
kislinsk added a comment to T26889: OpenIGTLink does not link on Linux with CMake 3.16.

Found a very recent OpenIGTLink issue: https://github.com/openigtlink/OpenIGTLink/issues/218
CMake issue tracker: https://gitlab.kitware.com/cmake/cmake/issues/20065

Dec 4 2019, 8:29 AM · MITK
kislinsk added a comment to T26889: OpenIGTLink does not link on Linux with CMake 3.16.

A script to easily reproduce the error:

Dec 4 2019, 7:44 AM · MITK
kislinsk triaged T26889: OpenIGTLink does not link on Linux with CMake 3.16 as Normal priority.
Dec 4 2019, 6:52 AM · MITK
kislinsk triaged T26888: MITK_BUILD_CONFIGURATION "All" reveals some failing tests on CI build clients as Normal priority.
Dec 4 2019, 6:27 AM · MITK

Dec 3 2019

floca committed rMITKfcb0a4eb1c8a: Added system independent output path generation. (authored by floca).
Added system independent output path generation.
Dec 3 2019, 9:04 PM
ramien committed rREGRCNNeec44b5618e5: re-added assets (authored by ramien).
re-added assets
Dec 3 2019, 7:00 PM
ramien committed rREGRCNNfcd0566f7434: re-added assets (authored by ramien).
re-added assets
Dec 3 2019, 6:59 PM
ramien committed rREGRCNN58bdb2dab478: rm code analysis (authored by ramien).
rm code analysis
Dec 3 2019, 6:53 PM
ramien committed rREGRCNNaca6ec1df0e3: setup cleanup (authored by ramien).
setup cleanup
Dec 3 2019, 6:48 PM
ramien committed rREGRCNN4c921ae7f932: setup cleanup (authored by ramien).
setup cleanup
Dec 3 2019, 6:46 PM
ramien committed rREGRCNN762da7eef4d5: readme fix (authored by ramien).
readme fix
Dec 3 2019, 6:41 PM
ramien committed rREGRCNN9ea9f6450dff: exts setup fix (authored by ramien).
exts setup fix
Dec 3 2019, 6:30 PM
ramien committed rREGRCNNed282e33717f: merge master into public (authored by ramien).
merge master into public
Dec 3 2019, 6:28 PM
ramien committed rREGRCNNd9cc2109989a: exts setup fix (authored by ramien).
exts setup fix
Dec 3 2019, 6:28 PM
floca committed rMITK29e20f6291dd: Quickfix / hack to avoid parsing errors for flow arguments under linux. (authored by floca).
Quickfix / hack to avoid parsing errors for flow arguments under linux.
Dec 3 2019, 5:43 PM
floca committed rMITK05ccf5cfbbcf: Removed unnecessary out commented code (authored by floca).
Removed unnecessary out commented code
Dec 3 2019, 5:43 PM
kislinsk closed T26887: Upgrade OpenCV to support Visual Studio 2019 as Resolved.
Dec 3 2019, 4:32 PM · MITK
kislinsk edited projects for T26887: Upgrade OpenCV to support Visual Studio 2019, added: MITK; removed MITK (2018-04-4).
Dec 3 2019, 4:21 PM · MITK
j762e committed rMITK4b80587b8479: Merge branch 'T26777-GCC-Fix' (authored by j762e).
Merge branch 'T26777-GCC-Fix'
Dec 3 2019, 4:08 PM
j762e committed rMITK3b1048ef882d: Disable ChartTestDriver due to incomplete test definition (authored by j762e).
Disable ChartTestDriver due to incomplete test definition
Dec 3 2019, 4:05 PM
kislinsk committed rMITK40e721dba80e: Merge branch 'T26887-OpenCVUpgrade' (authored by kislinsk).
Merge branch 'T26887-OpenCVUpgrade'
Dec 3 2019, 4:05 PM
kislinsk committed rMITKeb3058d3772a: Upgrade OpenCV from version 3.4.2 to 3.4.8 (authored by kislinsk).
Upgrade OpenCV from version 3.4.2 to 3.4.8
Dec 3 2019, 4:04 PM
kislinsk added a comment to T26887: Upgrade OpenCV to support Visual Studio 2019.

Pushed new branch T26887-OpenCVUpgrade.

Dec 3 2019, 4:03 PM · MITK
kislinsk edited projects for T26887: Upgrade OpenCV to support Visual Studio 2019, added: MITK (2018-04-4); removed MITK.
Dec 3 2019, 3:57 PM · MITK
kislinsk triaged T26887: Upgrade OpenCV to support Visual Studio 2019 as Normal priority.
Dec 3 2019, 3:49 PM · MITK
ramien committed rREGRCNN1518a0356e02: save (authored by ramien).
save
Dec 3 2019, 3:29 PM
ramien committed rMDTPUBLICd7c195033c04: added .gitignore (authored by ramien).
added .gitignore
Dec 3 2019, 3:00 PM
ramien committed rMDTPUBLICb98bfc86d818: install batchgenerators via pip (authored by ramien).
install batchgenerators via pip
Dec 3 2019, 3:00 PM
gaoh renamed T26885: Open NBIA Dataset - linux mitk workbench- crashes from Open NBIA Dataset with in the linux mitk workbench- crashes to Open NBIA Dataset - linux mitk workbench- crashes.
Dec 3 2019, 2:33 PM · MITK
gaoh triaged T26885: Open NBIA Dataset - linux mitk workbench- crashes as Low priority.
Dec 3 2019, 2:32 PM · MITK
kislinsk committed rMITK243727aebfd5: Merge branch 'T26883-TestContinuousBuildJobTriggers' (authored by kislinsk).
Merge branch 'T26883-TestContinuousBuildJobTriggers'
Dec 3 2019, 1:47 PM
kislinsk committed rMITK28c51b6bc45c: Test continuous build job triggers (authored by kislinsk).
Test continuous build job triggers
Dec 3 2019, 1:47 PM
kalali set the image for CI to F1453999: profile.
Dec 3 2019, 11:27 AM
j762e committed rMITK1d8cd949d16c: Merge branch 'T26777-GCC-Fix' (authored by j762e).
Merge branch 'T26777-GCC-Fix'
Dec 3 2019, 11:13 AM
j762e committed rMITKe577df4c1b0e: Fix compiler error (authored by j762e).
Fix compiler error
Dec 3 2019, 11:13 AM

Dec 2 2019

ramien committed rMDTPUBLIC264bff906049: readme typo fix (authored by ramien).
readme typo fix
Dec 2 2019, 9:09 PM
j762e committed rMITKf546a2e440ef: Merge branch 'T26777-GCC-Fix' (authored by j762e).
Merge branch 'T26777-GCC-Fix'
Dec 2 2019, 6:03 PM
j762e committed rMITK74c7f8746848: Correct use of map.insert() (authored by j762e).
Correct use of map.insert()
Dec 2 2019, 6:02 PM
j762e committed rMITKb75db92e40e1: Merge branch 'T26777-GCC-Fix' (authored by j762e).
Merge branch 'T26777-GCC-Fix'
Dec 2 2019, 5:22 PM
j762e committed rMITKd2b7f66cc1e2: std::map::insert_or_assign is only in C++ starting from C++17 (authored by j762e).
std::map::insert_or_assign is only in C++ starting from C++17
Dec 2 2019, 5:21 PM
j762e added a comment to T26777: Refactoring QmitkChartExample.

Pushed new branch T26777-GCC-Fix.

Dec 2 2019, 5:20 PM · MITK
j762e committed rMITK9a7b5772bc79: Merge branch 'T26777-Refactor-QmitkChartWidget' (authored by j762e).
Merge branch 'T26777-Refactor-QmitkChartWidget'
Dec 2 2019, 5:00 PM
ramien committed rREGRCNN238e7915a0f0: egg info cleaning (authored by ramien).
egg info cleaning
Dec 2 2019, 4:41 PM
ramien committed rREGRCNNdd978d866738: cf change (authored by ramien).
cf change
Dec 2 2019, 4:17 PM
neher closed T25793: [MITK Diffusion] Check for zeros and nans in fiber fit as Resolved.
Dec 2 2019, 4:06 PM · MITK Diffusion
neher committed rMITKDIFF4571cbba5af8: Merge branch 'T25793-FitNan' (authored by neher).
Merge branch 'T25793-FitNan'
Dec 2 2019, 4:05 PM
neher committed rMITKDIFFfb8af10cdc14: Catching division by zero (authored by neher).
Catching division by zero
Dec 2 2019, 4:04 PM
neher added a comment to T25793: [MITK Diffusion] Check for zeros and nans in fiber fit.

Pushed new branch T25793-FitNan.

Dec 2 2019, 4:04 PM · MITK Diffusion
neher edited projects for T25793: [MITK Diffusion] Check for zeros and nans in fiber fit, added: MITK Diffusion; removed MITK.
Dec 2 2019, 4:04 PM · MITK Diffusion
neher placed T26501: Patching on windows fails up for grabs.
Dec 2 2019, 3:42 PM · MITK
neher committed rMITKDIFFc2a6898d8b32: Merge branch 'T26879-TrkVoxelSize' (authored by neher).
Merge branch 'T26879-TrkVoxelSize'
Dec 2 2019, 3:41 PM