Page MenuHomePhabricator
Feed All Stories

Feb 14 2020

kompan committed rMITKb10562e946fe: In PrepareBaselineImage(), add baseline image averaging functionality. (authored by kompan).
In PrepareBaselineImage(), add baseline image averaging functionality.
Feb 14 2020, 8:54 AM
kompan committed rMITKb8f7753da951: First attempt to average two baseline images. (authored by kompan).
First attempt to average two baseline images.
Feb 14 2020, 8:54 AM
kompan committed rMITK9b9081f93052: Add timepoint selection for baseline averaging in UI (authored by kompan).
Add timepoint selection for baseline averaging in UI
Feb 14 2020, 8:54 AM
kompan added a comment to T22085: Perfusion Conversion to Concentration: Average Baseline signal.

Pushed new branch T22085-PerfusionConversionToConcentration-AverageBaselineSignal.

Feb 14 2020, 8:53 AM · Restricted Project, MITK
kislinsk moved T27016: Use OpenStack for our CI system from Restricted Project Column to Restricted Project Column on the Restricted Project board.

Then let's wait until we talked to the Openstack admins regarding Windows instances. If we can have them in the same Openstack project, resource requirements change anyway. If we cannot have them in the same project, we may just want to increase RAM to 160 GB to have 10 Linux build clients.

Feb 14 2020, 6:41 AM · Restricted Project, CI
kislinsk updated the task description for T27033: Clean up stale remote branches.
Feb 14 2020, 6:29 AM · Auto-closed, MITK

Feb 13 2020

floca moved T27046: Segmentation View and Multilabel Segmentation must not be active together (toolmanager inconsistency) from Backlog to MITK Meeting on the Request for Discussion board.
Feb 13 2020, 9:45 PM · Cleared, MITK (v2021.02)
floca moved T27069: OpenGL error / crash when opening context menu from Backlog to MITK Meeting on the Request for Discussion board.
Feb 13 2020, 9:44 PM · MITK
floca moved T27083: Workarround for the OpenGL context menu crash from Backlog to MITK Meeting on the Request for Discussion board.
Feb 13 2020, 9:44 PM · Request for Discussion, MITK
floca moved T27090: Provide standard NodePredicates from Backlog to MITK Meeting on the Request for Discussion board.
Feb 13 2020, 9:44 PM · MITK (v2024.06), Request for Discussion
floca moved T27122: PlanarFigureMaskGenerator::GetPrincipalAxis() is too pedantic from Backlog to MITK Meeting on the Request for Discussion board.
Feb 13 2020, 9:44 PM · MITK
floca closed T27006: [Perfusion] - Problems selecting T1 map as Resolved.

I close this task for now. Reason:

  • The problem of selecting a T1 map was identified. There is a workarround (see above) and it will be finally covered by T27043.
  • The fact that the current T1 conversion can be missunderstood is covered by T27047.
  • Adding an additional conversion option will be discussed by @Sara and @kompan and may spawn new tasks.
Feb 13 2020, 9:38 PM · MITK
floca changed the visibility for T27047: Perfusion- Conversion from signal to concentration: Rename Using T1-map.
Feb 13 2020, 9:36 PM · Cleared, MITK (v2021.02)
floca added a project to T27047: Perfusion- Conversion from signal to concentration: Rename Using T1-map: MITK.
Feb 13 2020, 9:36 PM · Cleared, MITK (v2021.02)
floca added a comment to T27016: Use OpenStack for our CI system.

P.S. :Great :)

Feb 13 2020, 9:27 PM · Restricted Project, CI
floca added a comment to T27016: Use OpenStack for our CI system.

Regarding ressources: Say what you prefer. I'll take care. If 7 would mean, we give back CPU resources. It is no problem. CPUs can be overbooked an if we have no machine configured using the CPU it does not cost money.

Feb 13 2020, 9:27 PM · Restricted Project, CI
kislinsk added a comment to T27016: Use OpenStack for our CI system.

Was able to (probably) completely provision Ubuntu 18.04 instances for MITK builds with a cloud-config file.

Feb 13 2020, 6:50 PM · Restricted Project, CI
eisenman added a comment to T27003: Extend representation object handling in NavigationDataObjectVisualizationFilter.

Can this be contributed to the master as is?

Feb 13 2020, 5:35 PM · IGT, MITK, Restricted Project
eisenman updated subscribers of T27003: Extend representation object handling in NavigationDataObjectVisualizationFilter.
Feb 13 2020, 5:34 PM · IGT, MITK, Restricted Project
floca committed rMITK27f345713145: fixed gcc compile error (authored by floca).
fixed gcc compile error
Feb 13 2020, 4:48 PM
floca committed rMITK84cd40490b1e: Optimized layout of the utilities view. (authored by floca).
Optimized layout of the utilities view.
Feb 13 2020, 4:48 PM
floca committed rMITK4b0ec85ee9b4: Removed binary property observer (authored by floca).
Removed binary property observer
Feb 13 2020, 4:48 PM
floca committed rMITK5d49b2a20a3c: Fixed regression with contour marker feature (authored by floca).
Fixed regression with contour marker feature
Feb 13 2020, 4:48 PM
floca committed rMITK4ad541e94d16: Fixed review remarks (authored by floca).
Fixed review remarks
Feb 13 2020, 4:48 PM
floca committed rMITKbbe4142eb6c7: fixed gcc compile errors. (authored by floca).
fixed gcc compile errors.
Feb 13 2020, 4:48 PM
kahl committed rMITK183917ff31f6: removed cancel, added option for default network (authored by kahl).
removed cancel, added option for default network
Feb 13 2020, 3:55 PM
floca committed rMITKf3c291c1ca4e: Fixed T27091 and fixed T27092 (authored by floca).
Fixed T27091 and fixed T27092
Feb 13 2020, 11:49 AM
floca closed T27091: Matchpoint moving and target mask not set as Resolved by committing rMITKf3c291c1ca4e: Fixed T27091 and fixed T27092.
Feb 13 2020, 11:49 AM · MITK, Restricted Project
floca committed rMITK73be073ac2a5: Fixed T27078 (authored by floca).
Fixed T27078
Feb 13 2020, 11:45 AM
kalali renamed T27046: Segmentation View and Multilabel Segmentation must not be active together (toolmanager inconsistency) from Segmentation View and Multilabel Segmentation must not be active together (toolmanager inconsitency) to Segmentation View and Multilabel Segmentation must not be active together (toolmanager inconsistency).
Feb 13 2020, 11:09 AM · Cleared, MITK (v2021.02)
thomass committed rMITK00ae9bf751a0: Reorganize plugin list in documentation, changed some list levels and fixed… (authored by thomass).
Reorganize plugin list in documentation, changed some list levels and fixed…
Feb 13 2020, 9:56 AM
thomass claimed T27094: [MITKDoc] Revise Segmentation Utilities Plugin Documentation.
Feb 13 2020, 9:51 AM · Cleared, MITK (v2021.02)
thomass claimed T27098: [MITKDoc] Revise Image Cropper Plugin Documentation.
Feb 13 2020, 9:51 AM · Cleared, MITK (v2021.02)
floca resigned from rMITK2f1b90756f29: Move project from PythonPackageExample to PythonPackage. Add example console….
Feb 13 2020, 8:43 AM
floca accepted rMITK2f1b90756f29: Move project from PythonPackageExample to PythonPackage. Add example console….
Feb 13 2020, 8:43 AM

Feb 12 2020

floca moved T26741: Finishing new node selection concept from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Feb 12 2020, 10:56 PM · Restricted Project
floca moved T27091: Matchpoint moving and target mask not set from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Feb 12 2020, 10:51 PM · MITK, Restricted Project
floca added a comment to T26451: DICOM plugin cannot parse DICOM directories in macOS installer.

OK, will look into it. If you could feedback insights regarding the master, it would be great. Thanks.

Feb 12 2020, 10:26 PM · MITK
floca reopened T27091: Matchpoint moving and target mask not set as "Open".

not yet in the master.

Feb 12 2020, 10:22 PM · MITK, Restricted Project
floca committed rMITKf1e6a54bf09f: fixed gcc compile errors. (authored by floca).
fixed gcc compile errors.
Feb 12 2020, 7:17 PM
floca committed rMITKb7e9fbe27be5: Fixed T27078 (authored by floca).
Fixed T27078
Feb 12 2020, 7:17 PM
floca closed T27078: Workbench crashes if statistics are computed with a double ellipse with equal diameter as Resolved by committing rMITKb7e9fbe27be5: Fixed T27078.
Feb 12 2020, 7:17 PM · MITK
floca added a comment to T27078: Workbench crashes if statistics are computed with a double ellipse with equal diameter.

Pushed new branch T27078-Crashes_with_empty_double_ellipse.

Feb 12 2020, 7:17 PM · MITK
floca added a parent task for T27078: Workbench crashes if statistics are computed with a double ellipse with equal diameter: Unknown Object (Maniphest Task).
Feb 12 2020, 7:16 PM · MITK
floca added a parent task for T27050: Crash with planar figures and stastics/measurement: Unknown Object (Maniphest Task).
Feb 12 2020, 7:16 PM · Restricted Project, MITK
floca lowered the priority of T27050: Crash with planar figures and stastics/measurement from High to Normal.

It seems to happen in a function ConvertHistogramToMap() that does not exist any more in the current master. We should observe if the propblem still exists, if the new code is used.

Feb 12 2020, 7:16 PM · Restricted Project, MITK
floca added a comment to T27050: Crash with planar figures and stastics/measurement.

At least we got a crash dump as first hint:

Feb 12 2020, 7:14 PM · Restricted Project, MITK
floca added a comment to T27078: Workbench crashes if statistics are computed with a double ellipse with equal diameter.

This crash was a subset. Currently we would have had always crashes if something went wrong with the calculation (like planar figure with no arear).

Feb 12 2020, 7:10 PM · MITK
floca added a revision to T27078: Workbench crashes if statistics are computed with a double ellipse with equal diameter: Unknown Object (Differential Revision).
Feb 12 2020, 7:09 PM · MITK
floca claimed T27078: Workbench crashes if statistics are computed with a double ellipse with equal diameter.
Feb 12 2020, 7:08 PM · MITK
floca updated the task description for T27123: Wrong value in statistic view for some PlanarFigures constellation.
Feb 12 2020, 7:02 PM · MITK
floca triaged T27123: Wrong value in statistic view for some PlanarFigures constellation as Unbreak Now! priority.
Feb 12 2020, 7:02 PM · MITK
kislinsk renamed T27122: PlanarFigureMaskGenerator::GetPrincipalAxis() is too pedantic from PlanarFigureMaskGenerator::GetPrincipalAxis() is to pedantic to PlanarFigureMaskGenerator::GetPrincipalAxis() is too pedantic.
Feb 12 2020, 6:40 PM · MITK
floca added a parent task for T27122: PlanarFigureMaskGenerator::GetPrincipalAxis() is too pedantic: Unknown Object (Maniphest Task).
Feb 12 2020, 6:38 PM · MITK
floca created T27122: PlanarFigureMaskGenerator::GetPrincipalAxis() is too pedantic.
Feb 12 2020, 6:37 PM · MITK
kalali placed T26854: Unattended Qt installation up for grabs.
Feb 12 2020, 3:50 PM · CI, Restricted Project, MITK
kislinsk moved T27016: Use OpenStack for our CI system from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Feb 12 2020, 3:50 PM · Restricted Project, CI
kislinsk moved T27016: Use OpenStack for our CI system from Backlog to In Progress on the CI board.
Feb 12 2020, 3:49 PM · Restricted Project, CI
kislinsk claimed T27016: Use OpenStack for our CI system.
Feb 12 2020, 3:49 PM · Restricted Project, CI
kislinsk added a comment to T27016: Use OpenStack for our CI system.

Was able to successfully connect an OpenStack Ubuntu 18.04 to Jenkins via SSH. Currently writing a cloud-config file to provision the instances for MITK.

Feb 12 2020, 3:49 PM · Restricted Project, CI
kalali added a comment to T27016: Use OpenStack for our CI system.

@kislinsk Could you describe the current status?

Feb 12 2020, 3:40 PM · Restricted Project, CI
floca added a comment to T27120: Remove old deprecated property names of DICOM information.

I know. I was just talking about removing the code from our DICOMReader, that gernerates these deprecated properties. The rest could stay as is, so scene files should should not be feel an impact. And we also have the mapping code in place.

Feb 12 2020, 3:33 PM · MITK (v2024.06), Request for Discussion
kislinsk added a comment to T27120: Remove old deprecated property names of DICOM information.

FYI: When changing/removing properties there's always the chance that old mitk scene files are suddenly incompatible as properties are stored in them. If that's an issue, property aliases may be a solution for a legacy mapping between property names.

Feb 12 2020, 1:29 PM · MITK (v2024.06), Request for Discussion
floca closed T25984: add Meaning of dicom tags to data (node) properties as Resolved.

I would close it because we have the DICOM property view for that. This view shows the DICOM properties with also the human readable name of the tag. In addition it shows the value slice and time resolved.

Feb 12 2020, 11:55 AM · DICOM, MITK, Restricted Project
floca added a comment to T23551: MITK does not support Dicom Subgroup Tags.

@thomass Is this still relevant? If yes, what do you mean with sub groups. I don't know this term from DICOM?

Feb 12 2020, 11:53 AM · MITK
floca triaged T27120: Remove old deprecated property names of DICOM information as Normal priority.
Feb 12 2020, 11:50 AM · MITK (v2024.06), Request for Discussion
neher closed T27118: Package fails as Resolved.
Feb 12 2020, 11:34 AM · MITK Diffusion
kompan committed rMITK1177fd1daf67: Remove "The" in front of plugin names. (authored by kompan).
Remove "The" in front of plugin names.
Feb 12 2020, 11:32 AM
neher committed rMITKDIFF758dcd522fb9: Merge branch 'T27118-Package' (authored by neher).
Merge branch 'T27118-Package'
Feb 12 2020, 10:34 AM
neher committed rMITKDIFF926a4a0446fc: Don't install python requirements file (authored by neher).
Don't install python requirements file
Feb 12 2020, 10:34 AM
neher added a comment to T27118: Package fails.

Pushed new branch T27118-Package.

Feb 12 2020, 10:34 AM · MITK Diffusion
neher triaged T27118: Package fails as Normal priority.
Feb 12 2020, 10:33 AM · MITK Diffusion
kleina committed rOBSHYPPOPY8a356f884293: replaced MPI.COMM_WORLD with self._mpi_comm (authored by kleina).
replaced MPI.COMM_WORLD with self._mpi_comm
Feb 12 2020, 9:58 AM
thomass triaged T27117: [MITKDoc] Revise Matchpoint Algorithm Control Plugin Documentation as Normal priority.
Feb 12 2020, 9:55 AM · Cleared, MITK (v2021.02)
thomass triaged T27116: [MITKDoc] Revise Matchpoint Algorithm Browser Plugin Documentation as Normal priority.
Feb 12 2020, 9:54 AM · Cleared, MITK (v2021.02)
thomass triaged T27115: [MITKDoc] Revise Matchpoint Frame Correction Plugin Documentation as Normal priority.
Feb 12 2020, 9:53 AM · Cleared, MITK (v2021.02)
thomass triaged T27114: [MITKDoc] Revise Matchpoint Mapper Plugin Documentation as Normal priority.
Feb 12 2020, 9:52 AM · Cleared, MITK (v2021.02)
thomass triaged T27113: [MITKDoc] Revise Matchpoint Registration Manipulator Plugin Documentation as Normal priority.
Feb 12 2020, 9:51 AM · Cleared, MITK (v2021.02)
thomass triaged T27112: [MITKDoc] Revise Matchpoint Registration Evaluator Plugin Documentation as Normal priority.
Feb 12 2020, 9:50 AM · Cleared, MITK (v2021.02)
thomass triaged T27111: [MITKDoc] Revise Matchpoint Registration Visualizer Plugin Documentation as Normal priority.
Feb 12 2020, 9:49 AM · Cleared, MITK (v2021.02)
thomass triaged T27110: [MITKDoc] Revise Command Line Tool/ Automatisation Plugin Documentation as Normal priority.
Feb 12 2020, 9:47 AM · Cleared, MITK (v2021.02)
thomass triaged T27109: [MITKDoc] Revise Properties Plugin Documentation as Normal priority.
Feb 12 2020, 9:46 AM · Cleared, MITK (v2021.02)
thomass triaged T27108: [MITKDoc] Revise Remeshing Plugin Documentation as Normal priority.
Feb 12 2020, 9:44 AM · MITK (v2021.02)
kahl committed rMITKdca0343de07e: registered mitk::Image::Pointer as QT Metatype (authored by kahl).
registered mitk::Image::Pointer as QT Metatype
Feb 12 2020, 9:43 AM
thomass triaged T27107: [MITKDoc] Revise Screenshot Maker Plugin Documentation as Normal priority.
Feb 12 2020, 9:43 AM · Cleared, MITK (v2021.02)
thomass triaged T27106: [MITKDoc] Revise Volume Visualization Plugin Documentation as Normal priority.
Feb 12 2020, 9:41 AM · Cleared, MITK (v2021.02)
thomass triaged T27105: [MITKDoc] Revise Measurement Plugin Documentation as Normal priority.
Feb 12 2020, 9:40 AM · Cleared, MITK (v2021.02)
thomass triaged T27104: [MITKDoc] Revise Modelfit Plugin Documentation as Normal priority.
Feb 12 2020, 9:36 AM · Cleared, MITK (v2021.02)
thomass triaged T27103: [MITKDoc] Revise Point Set Interaction Plugin Documentation as Normal priority.
Feb 12 2020, 9:33 AM · Cleared, MITK (v2021.02)
thomass triaged T27102: [MITKDoc] Revise Movie Maker Plugin Documentation as Normal priority.
Feb 12 2020, 9:31 AM · Cleared, MITK (v2021.02)
thomass triaged T27101: [MITKDoc] Revise Logging Plugin Documentation as Normal priority.
Feb 12 2020, 9:29 AM · Cleared, MITK (v2021.02)
thomass triaged T27100: [MITKDoc] Revise DataManager Plugin Documentation as Normal priority.
Feb 12 2020, 9:22 AM · Cleared, MITK (v2021.02)
thomass triaged T27099: [MITKDoc] Revise Clipping Plane Plugin Documentation as Normal priority.
Feb 12 2020, 9:21 AM · MITK (v2024.06), Cleared
thomass triaged T27098: [MITKDoc] Revise Image Cropper Plugin Documentation as Normal priority.
Feb 12 2020, 9:19 AM · Cleared, MITK (v2021.02)
thomass triaged T27097: [MITKDoc] Revise Statistics Plugin Documentation as Normal priority.
Feb 12 2020, 9:17 AM · Cleared, MITK (v2021.02)
thomass triaged T27096: [MITKDoc] Revise MultiLabel Segmentation Utilities Plugin Documentation as Normal priority.
Feb 12 2020, 8:59 AM · MITK (v2021.02)
thomass triaged T27095: [MITKDoc] Revise MultiLabel Segmentation Plugin Documentation as Normal priority.
Feb 12 2020, 8:52 AM · MITK (v2021.02)
thomass triaged T27094: [MITKDoc] Revise Segmentation Utilities Plugin Documentation as Normal priority.
Feb 12 2020, 8:49 AM · Cleared, MITK (v2021.02)
thomass triaged T27093: [MITKDoc] Revise Segmentation Plugin as Normal priority.
Feb 12 2020, 8:41 AM · MITK (v2021.02)

Feb 11 2020

floca committed rMITK0fbe9b8876db: Fixed T27091 and fixed T27092 (authored by floca).
Fixed T27091 and fixed T27092
Feb 11 2020, 9:24 PM