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Wed, Jun 24

kalali added a comment to T27486: Prepare changelog and migration guide for upcoming master merge.

The QmitkNodeSelectionDialog is the main widget to be used in order to select data nodes from the data storage. It is a pop-up-dialog that can be included in any other widget, such as the QmitkSingleNodeSelectionWidget or the QmitkMultiNodeSelectionWidget. It uses a tab widget that holds different data storage inspectors. A data storage inspector shows the (possibly filtered) data nodes of the data storage and allows to select one or more nodes. The selection can be accepted inside the node selection dialog and will be send to the including widget (i.e. the single node selection widget).

Wed, Jun 24, 4:43 PM · MITK (2020)
kalali removed a parent task for T25831: [MITDoc][ImageStatistics] Improve documentation: Unknown Object (Maniphest Task).
Wed, Jun 24, 10:37 AM · MITK
kalali renamed T25831: [MITDoc][ImageStatistics] Improve documentation from [new image statistics plugin] improve documentation to [MITDoc][ImageStatistics] Improve documentation.
Wed, Jun 24, 10:37 AM · MITK
kalali removed a parent task for T24771: [MITKDoc] Add a concept documentation for the data storage inspectors and the overhaul of the selection concept: T23751: Introduction of new selection concept.
Wed, Jun 24, 10:35 AM · MITK (2020)
kalali removed a subtask for T23751: Introduction of new selection concept: T24771: [MITKDoc] Add a concept documentation for the data storage inspectors and the overhaul of the selection concept.
Wed, Jun 24, 10:35 AM · Noteworthy, MITK
kalali renamed T24771: [MITKDoc] Add a concept documentation for the data storage inspectors and the overhaul of the selection concept from Add a concept documentation for the data storage inspectors and the overhaul of the selection concept to [MITKDoc] Add a concept documentation for the data storage inspectors and the overhaul of the selection concept.
Wed, Jun 24, 10:35 AM · MITK (2020)

Tue, Jun 23

floca added a revision to T27477: [Segmentation] Selection concept displays 'Favorite node list' by default leading to user confusion : Unknown Object (Differential Revision).
Tue, Jun 23, 7:53 PM · Cleared, MITK (2020)
kalali moved T27498: [Selection widgets] Define default for auto selection / listening mechanism from Backlog to MITK Meeting on the Request for Discussion board.
Tue, Jun 23, 5:17 PM · MITK
kalali renamed T27498: [Selection widgets] Define default for auto selection / listening mechanism from [Selection widgetes] Define default for auto selection / listening mechanism to [Selection widgets] Define default for auto selection / listening mechanism.
Tue, Jun 23, 5:17 PM · MITK
kalali closed T27485: Refactor PointSet Interaction plugin to use the new node selection widgets as Resolved.

Has been solved in D328

Tue, Jun 23, 5:16 PM · MITK (2020)
kalali closed T27485: Refactor PointSet Interaction plugin to use the new node selection widgets, a subtask of T24775: Refactor plugins to use the new node selection widgets, as Resolved.
Tue, Jun 23, 5:16 PM · Restricted Project, Cleared, MITK (2020)
kalali committed rMITK22dab9b92203: Refactor PointSet Interaction plugin to use the new node selection widgets (authored by kalali).
Refactor PointSet Interaction plugin to use the new node selection widgets
Tue, Jun 23, 5:14 PM
kalali committed rMITK23025cf3aa30: Remove superfluous includes (authored by kalali).
Remove superfluous includes
Tue, Jun 23, 5:14 PM
kalali committed rMITKdbdba5b5138e: Remove selection service connection (authored by kalali).
Remove selection service connection
Tue, Jun 23, 5:14 PM
kalali committed rMITKf622979168f7: Enable auto-select mode (authored by kalali).
Enable auto-select mode
Tue, Jun 23, 5:14 PM
kalali committed rMITKd455ef444eaf: Modify UI to include a single node selection widget (authored by kalali).
Modify UI to include a single node selection widget
Tue, Jun 23, 5:14 PM
kalali committed rMITK8b727dd2c756: Clean classes (authored by kalali).
Clean classes
Tue, Jun 23, 5:14 PM
kahl triaged T27501: Reimplement image transfer between MITK and Python as Normal priority.
Tue, Jun 23, 5:14 PM · MITK
kahl triaged T27500: Use Python/C-API for execution of Python Code with MITK-Python-Service as Normal priority.
Tue, Jun 23, 4:55 PM · MITK
floca added a revision to T27477: [Segmentation] Selection concept displays 'Favorite node list' by default leading to user confusion : Restricted Differential Revision.
Tue, Jun 23, 4:54 PM · Cleared, MITK (2020)
kahl triaged T27499: Reimplement MITK-Python-Service as Normal priority.
Tue, Jun 23, 4:44 PM · MITK
floca claimed T27477: [Segmentation] Selection concept displays 'Favorite node list' by default leading to user confusion .
Tue, Jun 23, 1:59 PM · Cleared, MITK (2020)
kislinsk added a comment to T27486: Prepare changelog and migration guide for upcoming master merge.

Separate sections of feature highlights like

Tue, Jun 23, 1:49 PM · MITK (2020)
kalali triaged T27498: [Selection widgets] Define default for auto selection / listening mechanism as Normal priority.
Tue, Jun 23, 1:37 PM · MITK
kalali closed T25753: Some refactoring of the selection classes as Resolved.
Tue, Jun 23, 1:12 PM · MITK
kalali closed T25753: Some refactoring of the selection classes, a subtask of T23751: Introduction of new selection concept, as Resolved.
Tue, Jun 23, 1:12 PM · Noteworthy, MITK
kalali committed rMITKdb065cd38360: Fix comments, refactor, clean code (authored by kalali).
Fix comments, refactor, clean code
Tue, Jun 23, 1:11 PM
kalali committed rMITKb2582322ba49: Merge remote-tracking branch 'origin/T25753-Refactor-selection-concept-classes'… (authored by kalali).
Merge remote-tracking branch 'origin/T25753-Refactor-selection-concept-classes'…
Tue, Jun 23, 1:11 PM
kislinsk moved T27497: Intensity profile of dynamic image only works for first timestep from Backlog to Statistics on the MITK (2020) board.
Tue, Jun 23, 1:11 PM · MITK (2020)
kislinsk triaged T27497: Intensity profile of dynamic image only works for first timestep as Normal priority.
Tue, Jun 23, 1:11 PM · MITK (2020)

Mon, Jun 22

floca added a project to T27495: [Registration] Evaluator/Manipulator wipe mode is lacking one click behind: Cleared.
Mon, Jun 22, 10:01 PM · Cleared, MITK (2020)
floca lowered the priority of T27495: [Registration] Evaluator/Manipulator wipe mode is lacking one click behind from Normal to Low.
Mon, Jun 22, 10:01 PM · Cleared, MITK (2020)
floca moved T27495: [Registration] Evaluator/Manipulator wipe mode is lacking one click behind from Backlog to Registration on the MITK (2020) board.
Mon, Jun 22, 10:01 PM · Cleared, MITK (2020)
floca edited projects for T27495: [Registration] Evaluator/Manipulator wipe mode is lacking one click behind, added: MITK (2020); removed MITK.
Mon, Jun 22, 10:00 PM · Cleared, MITK (2020)
floca triaged T27495: [Registration] Evaluator/Manipulator wipe mode is lacking one click behind as Normal priority.
Mon, Jun 22, 10:00 PM · Cleared, MITK (2020)
floca added a comment to T27486: Prepare changelog and migration guide for upcoming master merge.
IMPORTANT: TODO add all other now changes of the statistics view. Still missing and weren't in the list.
Mon, Jun 22, 9:57 PM · MITK (2020)
floca added a comment to T27486: Prepare changelog and migration guide for upcoming master merge.
  • DICOM image reader by default only condenses images with the same series instance UID into a 3D+t image. You may change to old behavior (condense everything where the geometry fits) in your reader configuration by setting onlyCondenseSameSeries to false in the configuration XML or by using the SetOnlyCondenseSameSeries() method of mitk::ThreeDnTDICOMSeriesReader.
Mon, Jun 22, 9:57 PM · MITK (2020)
eisenman added a comment to T27420: report text.

Item 3 and 4 are already mentioned in separate tasks: T27474 and T27475

Mon, Jun 22, 8:03 PM · challengeR (v1.0)
eisenman added a comment to T27412: Description of variability of achieved rankings across tasks is missing in short report.

The error mentioned in the comment does not occur anymore in the latest develop branch.

Mon, Jun 22, 7:40 PM · challengeR (v1.0)
eisenman moved T27396: Represent single-task challenge as multi-task challenge with one task from In Progress to Done on the challengeR (v1.0) board.
Mon, Jun 22, 7:38 PM · challengeR (v1.0)
eisenman added a comment to T27396: Represent single-task challenge as multi-task challenge with one task.

Thanks @aguilera for extensive testing of report generation. The residual issues from this task will be handled in T27494.

Mon, Jun 22, 7:37 PM · challengeR (v1.0)
eisenman created T27494: Check which files are still relevant.
Mon, Jun 22, 7:35 PM · challengeR (v1.0)
eisenman committed rCHALLENGERb5cdf4dadc19: Merge branch 'feature/T27396-RepresentSingleTaskChallengeAsMultiTaskChallenge'… (authored by eisenman).
Merge branch 'feature/T27396-RepresentSingleTaskChallengeAsMultiTaskChallenge'…
Mon, Jun 22, 7:22 PM
kalali added a comment to T27486: Prepare changelog and migration guide for upcoming master merge.
  • The following functions inside the QmitkStdMultiWidget have been removed
    • SetWidgetPlaneModeToSlicing
    • SetWidgetPlaneModeToRotation
    • SetWidgetPlaneModeToSwivel
    • SetWidgetPlanesLocked
    • SetWidgetPlanesRotationLocked
    • SetWidgetPlanesRotationLinked
Mon, Jun 22, 3:07 PM · MITK (2020)
floca moved T27493: Rework QmitkContourModelToImageWidget to be time point aware from Backlog to Segmentation on the MITK (2020) board.
Mon, Jun 22, 2:24 PM · MITK (2020)
floca triaged T27493: Rework QmitkContourModelToImageWidget to be time point aware as High priority.
Mon, Jun 22, 2:24 PM · MITK (2020)
floca moved T27491: Rework MatchPointRegistrationManipulator & MatchPointRegistrationEvaluator to be time point aware from Backlog to Registration on the MITK (2020) board.
Mon, Jun 22, 2:22 PM · MITK (2020)
floca added a parent task for T27490: Correct handling of time points selected by SliceNavigator: T27492: Rework QmitkBooleanOperationsWidget to be time point aware.
Mon, Jun 22, 2:21 PM · Noteworthy, MITK (2020)
floca added a subtask for T27492: Rework QmitkBooleanOperationsWidget to be time point aware: T27490: Correct handling of time points selected by SliceNavigator.
Mon, Jun 22, 2:21 PM · MITK (2020)
floca moved T27492: Rework QmitkBooleanOperationsWidget to be time point aware from Backlog to Segmentation on the MITK (2020) board.
Mon, Jun 22, 2:21 PM · MITK (2020)
floca triaged T27492: Rework QmitkBooleanOperationsWidget to be time point aware as High priority.
Mon, Jun 22, 2:21 PM · MITK (2020)
floca added a parent task for T27490: Correct handling of time points selected by SliceNavigator: T27491: Rework MatchPointRegistrationManipulator & MatchPointRegistrationEvaluator to be time point aware.
Mon, Jun 22, 2:19 PM · Noteworthy, MITK (2020)
floca added a subtask for T27491: Rework MatchPointRegistrationManipulator & MatchPointRegistrationEvaluator to be time point aware: T27490: Correct handling of time points selected by SliceNavigator.
Mon, Jun 22, 2:19 PM · MITK (2020)
floca triaged T27491: Rework MatchPointRegistrationManipulator & MatchPointRegistrationEvaluator to be time point aware as High priority.
Mon, Jun 22, 2:19 PM · MITK (2020)
floca added a project to T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps: Missing Info.

Please check if problem still persists as soon as T27490 is merged into develop or directly with D329 (is open for review by the way ;)

Mon, Jun 22, 2:02 PM · Missing Info, MITK (2020)
floca added a comment to T26974: [Segmentation] Region Growing 3D with 4D dataset not working.

Please regard changes of/for T27490.

Mon, Jun 22, 2:01 PM · MITK (2020)
floca added a subtask for T26974: [Segmentation] Region Growing 3D with 4D dataset not working: T27490: Correct handling of time points selected by SliceNavigator.
Mon, Jun 22, 2:01 PM · MITK (2020)
floca added a parent task for T27490: Correct handling of time points selected by SliceNavigator: T26974: [Segmentation] Region Growing 3D with 4D dataset not working.
Mon, Jun 22, 2:01 PM · Noteworthy, MITK (2020)
floca added a project to T25825: [Segmentation] Crash using Watershed on different time steps: Missing Info.

Please check if problem still persists as soon as T27490 is merged into develop or directly with D329 (is open for review by the way ;)

Mon, Jun 22, 1:59 PM · MITK (2020)
floca edited projects for T27476: [Segmentation] Crash if new segmentation is created with timestep different than 0, added: Missing Info; removed Request for Discussion.

Please check if problem still persists as soon as T27490 is merged into develop or directly with D329 (is open for review by the way ;)

Mon, Jun 22, 1:58 PM · MITK (2020)
kislinsk added a revision to T27490: Correct handling of time points selected by SliceNavigator: Unknown Object (Differential Revision).
Mon, Jun 22, 1:40 PM · Noteworthy, MITK (2020)
kislinsk updated subscribers of T26942: Crash on DICOM loading.

@hettich Why? 🤔

Mon, Jun 22, 1:38 PM · DICOM, d:cipher, MITK
kislinsk changed the visibility for T26942: Crash on DICOM loading.
Mon, Jun 22, 1:38 PM · DICOM, d:cipher, MITK
kalali raised the priority of T25030: Image navigator time slider moves twice from Low to Normal.
Mon, Jun 22, 1:18 PM · MITK (2020)
hettich changed the visibility for T26942: Crash on DICOM loading.
Mon, Jun 22, 10:42 AM · DICOM, d:cipher, MITK
kislinsk closed T26721: Prepare Qt 5.13 compatibility as Resolved.
Mon, Jun 22, 9:50 AM · MITK
neher committed rMITK119dbc557eb9: Unsupported/untested qt version is now a warning, not a cmake error (authored by neher).
Unsupported/untested qt version is now a warning, not a cmake error
Mon, Jun 22, 9:18 AM
e249r removed a watcher for CAMI: e249r.
Mon, Jun 22, 8:07 AM
e249r added a watcher for CAMI: e249r.
Mon, Jun 22, 8:06 AM
kislinsk closed T25154: MITK ITK fix for future compilers as Resolved.
Mon, Jun 22, 7:10 AM · MITK
kislinsk added a subtask for T27437: Migrate MITK to use ITK 5.x : T26413: Nifti2 support.
Mon, Jun 22, 7:09 AM · MITK
kislinsk added a parent task for T26413: Nifti2 support: T27437: Migrate MITK to use ITK 5.x .
Mon, Jun 22, 7:09 AM · MITK
kislinsk merged T26456: Update ITK to v5 into T27437: Migrate MITK to use ITK 5.x .
Mon, Jun 22, 7:09 AM · MITK
kislinsk merged task T26456: Update ITK to v5 into T27437: Migrate MITK to use ITK 5.x .
Mon, Jun 22, 7:09 AM · MITK
kislinsk closed T26311: Beamforming GPU memory allocation unstable as Resolved.
Mon, Jun 22, 7:06 AM · MITK, Photoacoustics
kislinsk added a parent task for T25798: Saving segmentations as .dcm (DICOM SEG) does not work: T25801: DICOM Seg writer doesn't support 4d DICOM images.
Mon, Jun 22, 7:06 AM · MITK
kislinsk added a subtask for T25801: DICOM Seg writer doesn't support 4d DICOM images: T25798: Saving segmentations as .dcm (DICOM SEG) does not work.
Mon, Jun 22, 7:06 AM · MITK
kislinsk removed a parent task for T25801: DICOM Seg writer doesn't support 4d DICOM images: T25798: Saving segmentations as .dcm (DICOM SEG) does not work.
Mon, Jun 22, 7:06 AM · MITK
kislinsk removed a subtask for T25798: Saving segmentations as .dcm (DICOM SEG) does not work: T25801: DICOM Seg writer doesn't support 4d DICOM images.
Mon, Jun 22, 7:06 AM · MITK
kislinsk closed T25798: Saving segmentations as .dcm (DICOM SEG) does not work as Resolved.
Mon, Jun 22, 7:05 AM · MITK
kislinsk closed T25697: Optimization of MitkImageStatisticsCalculatorTest as Resolved.
Mon, Jun 22, 7:01 AM · Restricted Project, MITK
kislinsk closed T25522: Fiducial based CT registration as Resolved.
Mon, Jun 22, 7:00 AM · Restricted Project, MITK, IGT
kislinsk closed T24973: Add bias fields as Resolved.
Mon, Jun 22, 6:59 AM · MITK Diffusion

Sat, Jun 20

kalali added a comment to T27100: [MITKDoc] Revise DataManager Plugin Documentation.

New documentation has been reviewed by André, next step would be to have it reviewed by a non-MITK developer (MITK Workbench user). This could probably happen during a release phase / checklist session.

Sat, Jun 20, 9:57 AM · Cleared, MITK (2020)
kalali added a comment to T27389: Running tutorial's Step8 gives Segmentation Fault!.

Thank you for your response and for pointing out the redundancy, I will fix this next week.

Sat, Jun 20, 9:53 AM · MITK (2018-04)
Oshio added a comment to T27389: Running tutorial's Step8 gives Segmentation Fault!.

@kalali Your solution solved the problem. I'd like to point out that SetWidgetPlanesVisibility(true) is already called somewhere inside InitializeMultiWidget(), so just AddPlanesToDataStorage()is enough for rendering the planes.

Sat, Jun 20, 6:12 AM · MITK (2018-04)

Fri, Jun 19

kislinsk added a comment to T27486: Prepare changelog and migration guide for upcoming master merge.

Pushed new branch release/T27486-2020-06-19.

Fri, Jun 19, 5:05 PM · MITK (2020)
floca added a parent task for T27490: Correct handling of time points selected by SliceNavigator: T27476: [Segmentation] Crash if new segmentation is created with timestep different than 0.
Fri, Jun 19, 4:03 PM · Noteworthy, MITK (2020)
floca added a subtask for T27476: [Segmentation] Crash if new segmentation is created with timestep different than 0: T27490: Correct handling of time points selected by SliceNavigator.
Fri, Jun 19, 4:03 PM · MITK (2020)
floca triaged T27490: Correct handling of time points selected by SliceNavigator as High priority.
Fri, Jun 19, 4:02 PM · Noteworthy, MITK (2020)
thomass removed a project from T26974: [Segmentation] Region Growing 3D with 4D dataset not working: Missing Info.
Fri, Jun 19, 3:27 PM · MITK (2020)
thomass added a comment to T26974: [Segmentation] Region Growing 3D with 4D dataset not working.

The error described above results from the function add seed that currently takes 3D images only. It can be solved with using a timeselector to crop the current time step and set a 3D seed.
However, the task is related to the discussion on time points versus time steps and should be revised accordingly.

Fri, Jun 19, 3:18 PM · MITK (2020)
kalali closed T27389: Running tutorial's Step8 gives Segmentation Fault! as Resolved.

I fixed the tutorial accordingly and close this task as resolved. If you still have problems, don't hesitate to reopen this task.

Fri, Jun 19, 2:58 PM · MITK (2018-04)
kalali committed rMITKaf38ac4d8840: Fix StdMultiWidget initialization and add LevelWindowWidget (authored by kalali).
Fix StdMultiWidget initialization and add LevelWindowWidget
Fri, Jun 19, 2:48 PM
kalali committed rMITK93a367e3566a: Fix StdMultiWidget initialization and add LevelWindowWidget (authored by kalali).
Fix StdMultiWidget initialization and add LevelWindowWidget
Fri, Jun 19, 2:48 PM
kislinsk added a comment to T26978: [Segmentation] Autocrop with MITK Multilabel Image Reader does not work with multilabel images.

I can confirm that autocrop in the DataManager context menu is broken and that it probably was never adapted to the LabelSetImage data type: when someone autocrops a segmentation (which is a LabelSetImage since years now even for "binary" segmentations created by the old segmention view), the cropped image should also be a cropped LabelSetImage containing all labels and layers. Other crop strategies like crop to a certain label is subject of the Multilabel Segmentation View context menu, but not of the general DataManager context menu.

Fri, Jun 19, 2:45 PM · Request for Discussion, Missing Info, MITK (2020)
nolden committed rMITK79cadd0edb2b: Fix CMake variable type of MITK_XVFB_TESTING_COMMAND (authored by nolden).
Fix CMake variable type of MITK_XVFB_TESTING_COMMAND
Fri, Jun 19, 2:08 PM
nolden committed rMITKa0144be45fa8: Fix CMake variable type of MITK_XVFB_TESTING_COMMAND (authored by nolden).
Fix CMake variable type of MITK_XVFB_TESTING_COMMAND
Fri, Jun 19, 2:08 PM
floca created T27489: Deprecate and correct QmitkSliceWidget?.
Fri, Jun 19, 12:33 PM · Request for Discussion
thomass added a comment to T27477: [Segmentation] Selection concept displays 'Favorite node list' by default leading to user confusion .

When the workbench is started from scratch it works.

Fri, Jun 19, 11:34 AM · Cleared, MITK (2020)