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Sep 10 2020

kislinsk added a comment to T19831: Create a bunch of common and often used miniapps such as converter, 4D extractor.

Deleted branch T19831-CommonMiniApps.

Sep 10 2020, 10:00 AM · Bugzilla, MITK
kislinsk added a comment to T19830: Rendering timegeometry does not match image timegeometry.

Deleted branch T19830-fixing-rendering-of-arbitraryTimeGeometries-snapshot.

Sep 10 2020, 9:58 AM · Bugzilla, MITK
kislinsk added a comment to T19830: Rendering timegeometry does not match image timegeometry.

Deleted branch T19830-fix-rendering-of-arbitrary-TimeGeometries-master.

Sep 10 2020, 9:58 AM · Bugzilla, MITK
kislinsk added a comment to T19814: Add 4D support to PlanarFigures.

Deleted branch T19814-4d-planarfigures-master.

Sep 10 2020, 9:58 AM · MITK, Bugzilla
kislinsk added a comment to T19473: Incorrect time bounds with 3D+t images which only differ in TriggerTime.

Deleted branch T19473-consider-triggertime-in-DICOM-loading-rebased.

Sep 10 2020, 9:58 AM · Bugzilla, MITK
kislinsk added a comment to T19814: Add 4D support to PlanarFigures.

Deleted branch T19814-4d-planarfigures-master2.

Sep 10 2020, 9:58 AM · MITK, Bugzilla
kislinsk added a comment to T19814: Add 4D support to PlanarFigures.

Deleted branch T19814-4d-planarfigures-master-rebased.

Sep 10 2020, 9:58 AM · MITK, Bugzilla
kislinsk added a comment to T19473: Incorrect time bounds with 3D+t images which only differ in TriggerTime.

Deleted branch T19473-consider-triggertime-in-DICOM-loading.

Sep 10 2020, 9:58 AM · Bugzilla, MITK
kislinsk added a comment to T20185: Implement Reader and Writer that saves and reads NavigationData and the correspondig Tool.

Deleted branch T20185-ReaderAndWriterForNavigationDataAndTool_102016.

Sep 10 2020, 9:57 AM · MITK
kislinsk added a comment to T19724: Feature processor for classification.

Deleted branch T19724-usBasedFeatureProcessing.

Sep 10 2020, 9:56 AM · Bugzilla, MITK
kislinsk added a comment to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.

Deleted branch T19784-AddQtAAEnableHighDpiScaling.

Sep 10 2020, 9:56 AM · MITK, Bugzilla
kislinsk added a comment to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental).

Deleted branch T19168-CleanPluginIntegration.

Sep 10 2020, 9:56 AM · Bugzilla, MITK
kislinsk added a comment to T19924: Machine-learning tractography fails on large datasets.

Deleted branch T19924-MLTraining-CrashOnLargeDatasets.

Sep 10 2020, 9:54 AM · MITK
kislinsk added a comment to T19924: Machine-learning tractography fails on large datasets.

Deleted branch T19924-MLTraining-CrashOnLargeDatasets-debugging.

Sep 10 2020, 9:54 AM · MITK
kislinsk added a comment to T23244: Xnat plugin: easy to use nrrd upload after DICOM import.

Deleted branch T23244-XNAT-nrrd-convenient-upload-feature.

Sep 10 2020, 9:53 AM · CSI-HD, MITK
kislinsk added a comment to T23302: Build errors in MITK Utilities.

Deleted branch T23302-sourcecode-fixes-for-clang-compatibility.

Sep 10 2020, 9:53 AM · MITK
kislinsk added a comment to T23248: Prepare MITK for macOS 10.13 HighSierra support.

Deleted branch T23248-BuildFixes4macOS1013.

Sep 10 2020, 9:53 AM · MITK, Restricted Project
kislinsk added a comment to T23248: Prepare MITK for macOS 10.13 HighSierra support.

Deleted branch T23248-test-with-latest-master.

Sep 10 2020, 9:53 AM · MITK, Restricted Project
kislinsk added a comment to T22929: Atomic operations API used in CppMicroServices are deprecated in macOS Sierra 10.12.5.

Deleted branch T22929-cppMicroServices3-for-MITK.

Sep 10 2020, 9:53 AM · MITK
kislinsk added a comment to T20004: OpenIGTLink connection to tracking data streams is not working.

Deleted branch T20004-FixOpenIGTLinkConnection.

Sep 10 2020, 9:52 AM · MITK
kislinsk added a comment to T19736: Rewrite IGT and Navigation module documentation.

Deleted branch T19736-NavigationModuleDocumentation_2016_09.

Sep 10 2020, 9:52 AM · Bugzilla, MITK
kislinsk added a comment to T18881: IGTTimeStamp is not in milliseconds.

Deleted branch T18881-FixIGTTimeStampAndReaderWriter.

Sep 10 2020, 9:52 AM · MITK, Bugzilla
kislinsk added a comment to T19609: platform project: New ImageStatistics Module.

Deleted branch T19609-integration-branch.

Sep 10 2020, 9:52 AM · MITK (2016-11), Bugzilla
kislinsk added a comment to T10304: NavigationDataPlayer should support tool storages.

Deleted branch T10304-NavigationDataPlayerAsTrackingDevice.

Sep 10 2020, 9:52 AM · Bugzilla, MITK
kislinsk added a comment to T18520: Geometry CleanUp Reloaded.

Deleted branch T18520-ConstCorrectForGeometries.

Sep 10 2020, 9:52 AM · Bugzilla, MITK
kislinsk added a comment to T19786: Overlay Layouter concept changes.

Deleted branch T19786-ImplementOverlayLayouterAsServiceStyleRebase.

Sep 10 2020, 9:47 AM · Bugzilla, MITK
kislinsk added a comment to T19786: Overlay Layouter concept changes.

Deleted branch T19786-ImplementOverlayLayouterAsServiceRebaseNov.

Sep 10 2020, 9:47 AM · Bugzilla, MITK
kislinsk added a comment to T19786: Overlay Layouter concept changes.

Deleted branch T19786-DICOMAnnotationDemo.

Sep 10 2020, 9:47 AM · Bugzilla, MITK
kislinsk added a comment to T19786: Overlay Layouter concept changes.

Deleted branch T19786-ImplementOverlayLayouterAsOverlayManagerReplacement.

Sep 10 2020, 9:47 AM · Bugzilla, MITK
kislinsk added a comment to T18922: Change VTK rendering backend to OpenGL2.

Deleted branch T18922-OpenGLBackendRebase2.

Sep 10 2020, 9:47 AM · Bugzilla, MITK
kislinsk added a comment to T18922: Change VTK rendering backend to OpenGL2.

Deleted branch T18922-OpenGLBackendRebase.

Sep 10 2020, 9:47 AM · Bugzilla, MITK
kislinsk added a comment to T24332: Limit MITK to python 3.

Deleted branch T24332-update-SimpleITK-and-use-system-python3.

Sep 10 2020, 9:46 AM · MITK (2018-04)
kislinsk added a comment to T24271: Port tests from old mitk test macros to CPPUNIT.

Deleted branch T24271-port-tests-integration.

Sep 10 2020, 9:46 AM · MITK
kislinsk added a comment to T24293: Verify LocaleSwitch usage in MITK CEST.

Deleted branch T24293-locale-switch-in-CEST.

Sep 10 2020, 9:46 AM · MITK
kislinsk added a comment to T24271: Port tests from old mitk test macros to CPPUNIT.

Deleted branch T24271-port-test-integration.

Sep 10 2020, 9:46 AM · MITK
kislinsk added a comment to T24085: MITK make PACKAGE does not work on windows if Python is enabled.

Deleted branch T24085-mitk-python-installer-fix.

Sep 10 2020, 9:46 AM · MITK
kislinsk added a comment to T23343: Dicom editor can not load dicom segmentation objects.

Deleted branch T23343-enable-microservice-based-reading-for-dicom-editor.

Sep 10 2020, 9:46 AM · MICO (Demo MICCAI 2018), MITK (2018-04)
kislinsk added a comment to T23756: Investigate use of precompiled headers.

Deleted branch T23756-cotire.

Sep 10 2020, 9:46 AM · MITK
kislinsk added a comment to T24085: MITK make PACKAGE does not work on windows if Python is enabled.

Deleted branch T24085-correctly-install-SimpleITK-to-bin.

Sep 10 2020, 9:46 AM · MITK
kislinsk added a comment to T23342: Create demo for MICCAI .

Deleted branch T23342-MICCAI_2017_Tutorial.

Sep 10 2020, 9:46 AM · MICO (Demo_MICCAI_2017)
kislinsk added a comment to T22830: Build errors due to different pixel types.

Deleted branch T22830-fix-image-conversion-build-errors.

Sep 10 2020, 9:46 AM · MITK
kislinsk added a comment to T23339: Change default: Open DICOM data with new dicom reader .

Deleted branch T23339-change-dicom-reader-default.

Sep 10 2020, 9:46 AM · MITK, MICO (Demo_MICCAI_2017)
kislinsk added a comment to T22118: Use Qt's windeployqt.exe to deploy Qt instead of our current install rules.

Deleted branch T22118-create-Qt-installer.

Sep 10 2020, 9:46 AM · MITK
kislinsk added a comment to T22654: Extending the Segmentation plugin with a multi-region threshold-based tool.

Deleted branch T22654-threshold-components-tool.

Sep 10 2020, 9:46 AM · Pull Request, MITK
kislinsk added a comment to T22801: Update DicomToNRRD cmdApp to new reader system.

Deleted branch T22801-update-dicom2nrrd.

Sep 10 2020, 9:46 AM · Restricted Project, MITK
kislinsk added a comment to T22810: Add a tolerance parameter to SurfaceToImageFilter.

Deleted branch T22810-Add-tolerance-to-surfacetoimagefilter.

Sep 10 2020, 9:46 AM · Pull Request, MITK
kislinsk added a comment to T20223: MITK does not load RGB and RGBA test images.

Deleted branch T20223-RGBAImageFix.

Sep 10 2020, 9:46 AM · MITK (2016-11)
kislinsk added a comment to T19360: Compatibility with old scene files broken (Surface line width redefined from int to float).

Deleted branch T19360-legacy-scene-surface-line-width-incompatible.

Sep 10 2020, 9:46 AM · Pull Request, Bugzilla, MITK
kislinsk added a comment to T19801: MITK crashes when deleting planar figure with "Delete" key.

Deleted branch T19801-planar-figure-interactor-crash.

Sep 10 2020, 9:46 AM · MITK (2016-11), Bugzilla

Sep 9 2020

eisenman committed rCHALLENGER833f3c352f41: Fix expectations of value_FUN (authored by eisenman).
Fix expectations of value_FUN
Sep 9 2020, 10:41 PM
eisenman committed rCHALLENGER71b760c11fe6: Let object returned from boxplot function inherit from ggplot again instead of… (authored by eisenman).
Let object returned from boxplot function inherit from ggplot again instead of…
Sep 9 2020, 10:06 PM
eisenman committed rCHALLENGERbf8a099952d6: Fix expectations of rank_FUN (authored by eisenman).
Fix expectations of rank_FUN
Sep 9 2020, 9:13 PM
eisenman updated subscribers of T27694: Fix failing unit tests.
Sep 9 2020, 9:07 PM · challengeR (v1.0)
eisenman claimed T27694: Fix failing unit tests.
Sep 9 2020, 9:06 PM · challengeR (v1.0)
eisenman added a comment to T27385: Variables holding the aggregated value are named differently for single- and multi-task challenges.

The tests in test-rankThenAggregate.R are failing because the expectation is "rank_FUN" but should be "rank_mean" or "rank_median" respectively after the changes. This will be fixed in T27694.

Sep 9 2020, 9:04 PM · challengeR (v1.0)
eisenman moved T27694: Fix failing unit tests from Backlog to In Progress on the challengeR (v1.0) board.
Sep 9 2020, 9:03 PM · challengeR (v1.0)
schererj added a comment to T27702: Create build-configuration for the MitkCLGlobalImageFeatures Miniapp (radiomics).

@floca I tried to build this configuration - but I cant find the executable.

Sep 9 2020, 6:12 PM · HiGHmed, Kaapana (internal), MITK
kalali added a revision to T27096: [MITKDoc] Revise MultiLabel Segmentation Utilities Plugin Documentation: Unknown Object (Differential Revision).
Sep 9 2020, 4:36 PM · MITK (v2021.02)
kalali added a comment to T27094: [MITKDoc] Revise Segmentation Utilities Plugin Documentation.

Another utility Contour to image was added so I had to add a screenshot. For visual consistency I changed all screenshots.

Sep 9 2020, 3:43 PM · Cleared, MITK (v2021.02)
kalali added a revision to T27094: [MITKDoc] Revise Segmentation Utilities Plugin Documentation: Unknown Object (Differential Revision).
Sep 9 2020, 3:41 PM · Cleared, MITK (v2021.02)
kislinsk added a revision to T27624: Fix Doxygen errors: Unknown Object (Differential Revision).
Sep 9 2020, 9:50 AM · MITK (v2021.02)
floca committed rMITKd145b937dd99: T27702 - Configuration to build classification cmd apps (authored by floca).
T27702 - Configuration to build classification cmd apps
Sep 9 2020, 9:38 AM
floca committed rMITK8e55b04ebcd5: Configuration to build classification cmd apps (authored by floca).
Configuration to build classification cmd apps
Sep 9 2020, 9:38 AM
floca closed T27702: Create build-configuration for the MitkCLGlobalImageFeatures Miniapp (radiomics) as Resolved by committing rMITK8e55b04ebcd5: Configuration to build classification cmd apps.
Sep 9 2020, 9:38 AM · HiGHmed, Kaapana (internal), MITK
kislinsk added a comment to T27624: Fix Doxygen errors.

Pushed new branch bugfix/T27624-FixDoxygenErrors.

Sep 9 2020, 9:27 AM · MITK (v2021.02)
kislinsk closed T27670: [Documentation] invalid link in MITK Style Guide as Resolved.

Thanks!

Sep 9 2020, 3:28 AM · MITK (v2021.02)
kislinsk added a comment to T27670: [Documentation] invalid link in MITK Style Guide.

Deleted branch bugfix/T27670-InvalidLinkInStyleGuide.

Sep 9 2020, 3:27 AM · MITK (v2021.02)
kislinsk committed rMITK428b689257c2: Merge branch 'bugfix/T27670-InvalidLinkInStyleGuide' into develop (authored by kislinsk).
Merge branch 'bugfix/T27670-InvalidLinkInStyleGuide' into develop
Sep 9 2020, 3:26 AM
kislinsk added a comment to T27670: [Documentation] invalid link in MITK Style Guide.

Pushed new branch bugfix/T27670-InvalidLinkInStyleGuide.

Sep 9 2020, 3:26 AM · MITK (v2021.02)
kislinsk added a revision to T27697: Documentation feedback received from testers : Unknown Object (Differential Revision).
Sep 9 2020, 3:19 AM · Auto-closed, MITK
kislinsk closed T27661: [Documentation] Update "How to create a new MITK Module" as Resolved.
Sep 9 2020, 3:15 AM · Cleared, MITK (v2021.02)
kislinsk added a comment to T27661: [Documentation] Update "How to create a new MITK Module".

Deleted branch bugfix/T27661-NewModuleDoc.

Sep 9 2020, 3:13 AM · Cleared, MITK (v2021.02)
kislinsk committed rMITKf502f8a50ebf: Merge branch 'bugfix/T27661-NewModuleDoc' into develop (authored by kislinsk).
Merge branch 'bugfix/T27661-NewModuleDoc' into develop
Sep 9 2020, 3:12 AM
kislinsk added a comment to T27661: [Documentation] Update "How to create a new MITK Module".

Pushed new branch bugfix/T27661-NewModuleDoc.

Sep 9 2020, 3:11 AM · Cleared, MITK (v2021.02)
kislinsk added a comment to T27695: 2020 Week 36 (Very Early September).
Sep 9 2020, 2:58 AM · MITK
kislinsk committed rMITK46a8bcfc8862: Merge branch 'release/T27695-2020-Week-36' into develop (authored by kislinsk).
Merge branch 'release/T27695-2020-Week-36' into develop
Sep 9 2020, 2:49 AM
kislinsk added a comment to T27695: 2020 Week 36 (Very Early September).
Sep 9 2020, 2:46 AM · MITK
kislinsk committed rMITKc41827f2584d: Received feedback from tutorial testers (authored by thomass).
Received feedback from tutorial testers
Sep 9 2020, 2:28 AM
kislinsk committed rMITKb8cd14e19625: Received feedback from tutorial testers (authored by thomass).
Received feedback from tutorial testers
Sep 9 2020, 2:28 AM
kislinsk committed rMITK09cf4bd1c505: T27095 - Rework Multi-label segmentation documentation (authored by thomass).
T27095 - Rework Multi-label segmentation documentation
Sep 9 2020, 2:27 AM
kislinsk committed rMITK566d05687843: T27095 - Rework Multi-label segmentation documentation (authored by thomass).
T27095 - Rework Multi-label segmentation documentation
Sep 9 2020, 2:27 AM
kislinsk closed T27095: [MITKDoc] Revise MultiLabel Segmentation Plugin Documentation as Resolved by committing rMITK566d05687843: T27095 - Rework Multi-label segmentation documentation.
Sep 9 2020, 2:27 AM · MITK (v2021.02)

Sep 8 2020

floca added a comment to T27702: Create build-configuration for the MitkCLGlobalImageFeatures Miniapp (radiomics).

Ok, for the beginning, to have a configuration as fast as possible for the kaapana release, I have kept Qt on board as dependency and not started to mess arround in code.

Sep 8 2020, 3:56 PM · HiGHmed, Kaapana (internal), MITK
floca added a revision to T27702: Create build-configuration for the MitkCLGlobalImageFeatures Miniapp (radiomics): Restricted Differential Revision.
Sep 8 2020, 3:47 PM · HiGHmed, Kaapana (internal), MITK
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

macOS MatchPoint errors that are actually just warnings should be fixed now as well. It's a bug in CMake/CTest and the workaround is to use launchers: https://gitlab.kitware.com/cmake/cmake/-/issues/20832

Sep 8 2020, 1:54 PM · CI, MITK (v2021.02), Restricted Project
kislinsk committed rMITK923677a343b7: Merge branch 'bugfix/T25882-RewriteDashboardScript' into develop (authored by kislinsk).
Merge branch 'bugfix/T25882-RewriteDashboardScript' into develop
Sep 8 2020, 1:08 PM
schererj added a comment to T27702: Create build-configuration for the MitkCLGlobalImageFeatures Miniapp (radiomics).

@schererj Do you mean the XML result export?

Sep 8 2020, 12:18 PM · HiGHmed, Kaapana (internal), MITK
e249r added a comment to T27189: REST API for data storage.

Pushed new branch feature/T27189-RestApiForDataStorage.

Sep 8 2020, 12:01 PM · MITK (v2024.06), Restricted Project, Request for Discussion
kalali claimed T27096: [MITKDoc] Revise MultiLabel Segmentation Utilities Plugin Documentation.
Sep 8 2020, 11:33 AM · MITK (v2021.02)
kalali claimed T27094: [MITKDoc] Revise Segmentation Utilities Plugin Documentation.
Sep 8 2020, 11:32 AM · Cleared, MITK (v2021.02)
floca raised the priority of T27702: Create build-configuration for the MitkCLGlobalImageFeatures Miniapp (radiomics) from Wishlist to High.

@goetzm Thanks for the feedback. I will have a look, if take that road or life with Qt dependency for now. Have to evaluate the impact in practice...

Sep 8 2020, 11:15 AM · HiGHmed, Kaapana (internal), MITK
floca added a comment to T25882: Rewrite dashboard script for CDash 2.6.

OMG. how should one find this...

Sep 8 2020, 11:12 AM · CI, MITK (v2021.02), Restricted Project
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

I finally found the source of the documentation errors by accident. It was a dot digraph with invalid flat edges between record shapes. I changed the shapes to boxes and it should work now.

Sep 8 2020, 10:49 AM · CI, MITK (v2021.02), Restricted Project
kislinsk committed rMITK2661a3470aff: Merge branch 'bugfix/T25882-RewriteDashboardScript' into develop (authored by kislinsk).
Merge branch 'bugfix/T25882-RewriteDashboardScript' into develop
Sep 8 2020, 10:45 AM
kislinsk triaged T27702: Create build-configuration for the MitkCLGlobalImageFeatures Miniapp (radiomics) as Wishlist priority.
Sep 8 2020, 10:14 AM · HiGHmed, Kaapana (internal), MITK
kislinsk reassigned T27608: [MITKDoc] Documentation Refurbish - Developer Manual from kislinsk to kompan.
Sep 8 2020, 10:07 AM · MITK (v2024.06), Cleared
kompan added a comment to T27608: [MITKDoc] Documentation Refurbish - Developer Manual.

So far, Sarina and I changed the \section,\subsection to headings <h1>, <h2,>..., such that the table of contents doesn't have too much depth (which is confusing to navigate through). However, the more sensible way would be to keep the \section structure and instead adjust the depth of the doxygen TOC_INCLUDE_HEADINGS. The default depths is 5.

Sep 8 2020, 9:46 AM · MITK (v2024.06), Cleared
kislinsk added a comment to T27608: [MITKDoc] Documentation Refurbish - Developer Manual.

I re-created the branch above, branching off from the latest develop branch.

Sep 8 2020, 9:34 AM · MITK (v2024.06), Cleared
kislinsk added a comment to T27608: [MITKDoc] Documentation Refurbish - Developer Manual.

Pushed new branch bugfix/T27608-DocumentationRefurbish-DeveloperManual.

Sep 8 2020, 9:34 AM · MITK (v2024.06), Cleared
kislinsk added a comment to T27608: [MITKDoc] Documentation Refurbish - Developer Manual.

Deleted branch bugfix/T27608-DocumentationRefurbish-DeveloperManual.

Sep 8 2020, 9:33 AM · MITK (v2024.06), Cleared