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Wed, Feb 17

gaoh committed rKAAPANA81bf872b276c: Update of mitk: rename mitk_voluem to mitk_workbench. Change version of… (authored by gaoh).
Update of mitk: rename mitk_voluem to mitk_workbench. Change version of…
Wed, Feb 17, 6:20 PM
gaoh committed rKAAPANA902d0b8a6823: T28306 Upper case laters could result in errors (authored by gaoh).
T28306 Upper case laters could result in errors
Wed, Feb 17, 1:14 PM
gaoh added a comment to T28302: MITK CI jobs for Kaapana.

And MITK volume (aka the normal workbench) uses the Release build with segmentation=ON

Maybe we should then just label it MITK Workbenches to avoid confusion and reduce (redundant) artefacts.

Wed, Feb 17, 11:01 AM · CI, MITK
floca added a comment to T28311: MitkFlowBench Naming Issue.
In T28311#220415, @gaoh wrote:

would be to give it the name of the Instance UID.

Understood, but thats not that easy yet, as the Instance UID is currently generated by DCMQI in the writing process. But that is something we should alter somewhen anyways, as we already need this UID within MITK.
So I guess we take one of the other choices as mitigation strategy.

Wed, Feb 17, 9:27 AM · MITK
gaoh added a comment to T28311: MitkFlowBench Naming Issue.

In case of kaapana, the name is currently irrelevant: directly in the next operator, the dcm files are send to the PACs anyway and then the file is deleted.
What would make sense, regading the naming in the PACs and when downloading files, would be to give it the name of the Instance UID.

Wed, Feb 17, 9:13 AM · MITK

Tue, Feb 16

floca added a comment to T28311: MitkFlowBench Naming Issue.

It is the "\" in the node name.

Tue, Feb 16, 10:28 PM · MITK
kislinsk closed T28000: MITK v2021.02 as Resolved.

Nvidia AIAA WorkbenchRelease binaries are building or were already deployed.

Tue, Feb 16, 10:02 PM · MITK-ProjectTemplate, MITK (v2021.02)
kalali edited projects for T26969: [Segmentation] New segmentation dialog: Change color twice and aborting the second time chages color to red, added: MITK; removed MITK (v2021.02).
Tue, Feb 16, 8:47 PM · MITK
kalali added a revision to T26969: [Segmentation] New segmentation dialog: Change color twice and aborting the second time chages color to red: Unknown Object (Differential Revision).
Tue, Feb 16, 7:18 PM · MITK
kalali claimed T26969: [Segmentation] New segmentation dialog: Change color twice and aborting the second time chages color to red.
Tue, Feb 16, 7:14 PM · MITK
kalali edited projects for T26959: Newly created LabelSet segmentation is not displayed as "outline binary", added: Request for Discussion, MITK; removed MITK (v2021.02).

It seems as if datanode->GetBoolProperty("binary", binary, renderer) inside mitkImageVtkMapper2D always results in binary being false. This might be true for our LabelSet images, but the properties view still shows the property binary as true, e.g. for segmentations created with the classic segmentation view.

Tue, Feb 16, 6:07 PM · MITK
floca committed rRTTBdffbb9433fb8: Started rework of RTTB build system to introduce private dependencies. (authored by floca).
Started rework of RTTB build system to introduce private dependencies.
Tue, Feb 16, 5:23 PM
kalali triaged T28315: [Selection concept] Provide preference page option to show / hide helper nodes as Normal priority.
Tue, Feb 16, 5:01 PM · MITK
jmcuadra created T28314: Text not showed in Python console using Theme Light.
Tue, Feb 16, 4:43 PM · MITK
gaoh added a comment to T28311: MitkFlowBench Naming Issue.

so maybe a Regex is needed, or just a default file name..

Tue, Feb 16, 11:00 AM · MITK
gaoh created T28311: MitkFlowBench Naming Issue.
Tue, Feb 16, 10:58 AM · MITK
gaoh committed rKAAPANAf52b8ae3adb9: update dags for mitk_volume to the curren dev version (authored by gaoh).
update dags for mitk_volume to the curren dev version
Tue, Feb 16, 10:07 AM
schererj moved T28109: Check correct association of Segs with origin DICOM from Backlog to Resolved on the Kaapana (internal) board.
Tue, Feb 16, 10:05 AM · Kaapana (internal)
schererj moved T28053: DICOM Seg not associated with source DICOM from Backlog to Resolved on the Kaapana (internal) board.
Tue, Feb 16, 10:05 AM · Kaapana (internal)
gaoh committed rKAAPANA6148c98651e1: adapted KaapanaApplication and the mitk_flow dag to the current dev version (authored by gaoh).
adapted KaapanaApplication and the mitk_flow dag to the current dev version
Tue, Feb 16, 9:21 AM
neher added a comment to T28109: Check correct association of Segs with origin DICOM.

Missing tags in the Seg, so it is an error in the file.

Tue, Feb 16, 6:56 AM · Kaapana (internal)
neher closed T28109: Check correct association of Segs with origin DICOM as Resolved.

This should be resolved.

Tue, Feb 16, 6:55 AM · Kaapana (internal)
neher closed T28053: DICOM Seg not associated with source DICOM as Resolved.

This should be resolved.

Tue, Feb 16, 6:55 AM · Kaapana (internal)

Mon, Feb 15

schererj closed T28196: [Docs] Update Dev-Guide for 0.1.1-dev as Resolved.
Mon, Feb 15, 3:54 PM · Kaapana (internal)
schererj closed T28273: configmap for kibana and elasticsearch throws an error as Resolved.
Mon, Feb 15, 3:52 PM · Kaapana (internal)
schererj moved T28127: Reopen segmentation in MITK from Backlog to Resolved on the Kaapana (internal) board.
Mon, Feb 15, 3:51 PM · MITK (v2021.02), Restricted Project, Kaapana (internal)
schererj moved T28049: DataUpload fails with Firefox from Backlog to Resolved on the Kaapana (internal) board.
Mon, Feb 15, 3:51 PM · Kaapana (internal)
schererj moved T27702: Create build-configuration for the MitkCLGlobalImageFeatures Miniapp (radiomics) from Backlog to Resolved on the Kaapana (internal) board.
Mon, Feb 15, 3:51 PM · HiGHmed, Kaapana (internal), MITK
schererj added a comment to T28109: Check correct association of Segs with origin DICOM.

@neher is there a connection to T28053 ?

Mon, Feb 15, 3:50 PM · Kaapana (internal)
schererj closed T28049: DataUpload fails with Firefox as Invalid.

Duplicate of T28291

Mon, Feb 15, 3:45 PM · Kaapana (internal)
schererj added a comment to T28053: DICOM Seg not associated with source DICOM.

@neher is this still an issue? I think we have all the SEGs working now, or?

Mon, Feb 15, 3:43 PM · Kaapana (internal)
schererj removed a project from T28232: Shapemodels: Kaapana (internal).
Mon, Feb 15, 3:39 PM · Request for Discussion, MITK
kislinsk added a comment to T28000: MITK v2021.02.

Deleted branch from rMPT MITK-ProjectTemplate: release/T28000-v2021.02.

Mon, Feb 15, 3:18 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk committed rMPTa6977910a7c0: Merge branch 'master' into develop (authored by kislinsk).
Merge branch 'master' into develop
Mon, Feb 15, 3:18 PM
kislinsk committed rMPTaaf7bd9d1cdf: Migrate to MITK's new selection widget (authored by kislinsk).
Migrate to MITK's new selection widget
Mon, Feb 15, 3:18 PM
kislinsk committed rMPTe3c0aee19f6e: Merge branch 'release/T28000-v2021.02' (authored by kislinsk).
Merge branch 'release/T28000-v2021.02'
Mon, Feb 15, 3:17 PM
kislinsk added a comment to T28000: MITK v2021.02.

Pushed new branch to rMPT MITK-ProjectTemplate: release/T28000-v2021.02.

Mon, Feb 15, 3:14 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk added a comment to T28000: MITK v2021.02.

Deleted branch from rMPT MITK-ProjectTemplate: release/T28000-v2021.01.

Mon, Feb 15, 3:13 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk added a comment to T28000: MITK v2021.02.

Deleted branch from rMITK MITK: bugfix/T28000-BumpDevelVersion.

Mon, Feb 15, 3:11 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk committed rMITK7984ffeed3be: Merge branch 'master' into develop (authored by kislinsk).
Merge branch 'master' into develop
Mon, Feb 15, 3:11 PM
kislinsk committed rMITK02b8c091029b: Bump MITK development version (authored by kislinsk).
Bump MITK development version
Mon, Feb 15, 3:11 PM
kislinsk committed rMITKb9f34b51cab7: Merge branch 'bugfix/T28000-BumpDevelVersion' into develop (authored by kislinsk).
Merge branch 'bugfix/T28000-BumpDevelVersion' into develop
Mon, Feb 15, 3:10 PM
kislinsk added a comment to T28000: MITK v2021.02.

Pushed new branch to rMITK MITK: bugfix/T28000-BumpDevelVersion.

Mon, Feb 15, 3:10 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk added a comment to T28000: MITK v2021.02.

Deleted branch from rMITK MITK: bugfix/T28000-BumpDevelVersion.

Mon, Feb 15, 3:09 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk added a comment to T28000: MITK v2021.02.

Deleted branch from rMITK MITK: release/T28000-v2021.02.

Mon, Feb 15, 3:07 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk added a comment to T28000: MITK v2021.02.

Pushed new branch to rMITK MITK: bugfix/T28000-BumpDevelVersion.

Mon, Feb 15, 3:05 PM · MITK-ProjectTemplate, MITK (v2021.02)
schererj assigned T27968: CTP gets stuck on large import to gaoh.
Mon, Feb 15, 2:07 PM · Request for Discussion, Kaapana (internal)
kislinsk edited the content of Changelog.
Mon, Feb 15, 1:59 PM · MITK
kislinsk committed rMITKa526048fa0c3: Make app shortcuts on Windows work with spaces in paths (authored by kislinsk).
Make app shortcuts on Windows work with spaces in paths
Mon, Feb 15, 1:51 PM
kislinsk committed rMITKd8b6ae5746fc: Allow executing app shortcuts on Windows from other directories (authored by kislinsk).
Allow executing app shortcuts on Windows from other directories
Mon, Feb 15, 1:51 PM
kislinsk committed rMITK5b9cf4986990: Bump MITK version (authored by kislinsk).
Bump MITK version
Mon, Feb 15, 1:51 PM
kislinsk committed rMITKae79ba96d7e2: Set working directory of app shortcuts on Windows to current directory (authored by kislinsk).
Set working directory of app shortcuts on Windows to current directory
Mon, Feb 15, 1:51 PM
kislinsk committed rMITK33ea274cbd50: Fix erasing labels in 4-d images (authored by kislinsk).
Fix erasing labels in 4-d images
Mon, Feb 15, 1:51 PM
kislinsk committed rMITK24935707b963: v2021.02 (authored by kislinsk).
v2021.02
Mon, Feb 15, 1:51 PM
kislinsk published a new version of MITK v2021.02.
Mon, Feb 15, 1:46 PM
neher closed T28230: Issue with DICOM SEG -> NIFTI conversion: missing empty slices as Resolved.
Mon, Feb 15, 9:51 AM · MITK

Sat, Feb 13

kislinsk edited the content of Merging into master Branch.
Sat, Feb 13, 9:13 PM
kislinsk edited the content of 2021 Week 06 (Early February).
Sat, Feb 13, 9:12 PM
kislinsk edited the content of 2021 Week 04 (Very Late January).
Sat, Feb 13, 9:11 PM
kislinsk edited the content of 2020 Week 52 (Late December).
Sat, Feb 13, 9:10 PM
kislinsk edited the content of 2020 Week 47 (Mid November).
Sat, Feb 13, 9:10 PM
kislinsk edited the content of 2020 Week 43 (Late October).
Sat, Feb 13, 9:09 PM
kislinsk edited the content of 2020 Week 39 (Late September).
Sat, Feb 13, 9:09 PM
kislinsk edited the content of 2020 Week 36 (Very Early September).
Sat, Feb 13, 9:08 PM
kislinsk edited the content of 2020 Week 31 (Very Late July).
Sat, Feb 13, 9:07 PM
kislinsk edited the content of 2020 Week 27 (Very Early July).
Sat, Feb 13, 9:07 PM
kislinsk edited the content of 2020 Week 25 (Late June).
Sat, Feb 13, 9:06 PM

Fri, Feb 12

schellem triaged T28305: SPIE_simulations as Normal priority.
Fri, Feb 12, 5:37 PM · CAMI, Photoacoustics
m564f committed rKAAPANAabe9d18c2a67: typo in version tag (authored by m564f).
typo in version tag
Fri, Feb 12, 3:38 PM
m564f committed rKAAPANA149ff7dc28f0: removed comments (authored by m564f).
removed comments
Fri, Feb 12, 3:38 PM
floca added a comment to T28302: MITK CI jobs for Kaapana.

And MITK volume (aka the normal workbench) uses the Release build with segmentation=ON

Maybe we should then just label it MITK Workbenches to avoid confusion and reduce (redundant) artefacts.

Fri, Feb 12, 1:25 PM · CI, MITK
kalali edited projects for T28138: [MultiLabel Segmentation] Add tests for the LabelSetImage, added: MITK; removed MITK (v2021.02).
Fri, Feb 12, 12:49 PM · MITK
kalali placed T28130: Extend "Checkliste MultiLabel Segmentierung – 3D Segmentierung" up for grabs.
Fri, Feb 12, 12:47 PM · MITK
kalali edited projects for T26956: LevelWindow slider does not expand the level/window scale, added: MITK; removed MITK (v2021.02).
Fri, Feb 12, 12:37 PM · MITK
kalali edited projects for T27907: Extend "Checkliste Documentation", added: MITK; removed MITK (v2021.02).
Fri, Feb 12, 12:36 PM · MITK, Cleared
kalali edited projects for T28265: [Checklist] Overhaul ViewNavigator checklists to be in line with the latest changes to the checklists, added: MITK; removed MITK (v2021.02).
Fri, Feb 12, 12:36 PM · MITK
kalali placed T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" up for grabs.
Fri, Feb 12, 12:30 PM · MITK, Cleared
kalali lowered the priority of T27737: Extend "Checkliste Segmentierung – Optionen" from High to Normal.
Fri, Feb 12, 12:29 PM · MITK, Cleared
kalali placed T27850: Extend "Checkliste Segmentierung – 3D Segmentierung" up for grabs.
Fri, Feb 12, 12:29 PM · MITK, Cleared
kalali placed T27873: Extend "Checkliste Segmentierung – Manuelle Segmentierung mit Interpolation" up for grabs.
Fri, Feb 12, 12:28 PM · MITK, Cleared
kalali placed T27906: Extend "Checkliste Segmentierung – Utilities" up for grabs.
Fri, Feb 12, 12:28 PM · MITK, Cleared
kalali lowered the priority of T28110: Extend checklists for multilabel segmentation view from High to Normal.
Fri, Feb 12, 12:27 PM · MITK
kalali placed T28111: Extend "Checkliste MultiLabel Segmentierung – 2D Segmentierung" up for grabs.
Fri, Feb 12, 12:26 PM · MITK
kalali renamed T28108: [Release Checklists] Prepare release checklists from [Release Checklists] Prepare release checklists for Release 2021 to [Release Checklists] Prepare release checklists.
Fri, Feb 12, 12:25 PM · MITK
kalali lowered the priority of T28111: Extend "Checkliste MultiLabel Segmentierung – 2D Segmentierung" from High to Normal.
Fri, Feb 12, 12:24 PM · MITK
kalali lowered the priority of T28130: Extend "Checkliste MultiLabel Segmentierung – 3D Segmentierung" from High to Normal.
Fri, Feb 12, 12:24 PM · MITK
kalali lowered the priority of T28132: Extend "Checkliste MultiLabel Segmentierung – Interpolation" from High to Normal.
Fri, Feb 12, 12:23 PM · MITK
kalali lowered the priority of T28133: Extend "Checkliste MultiLabel Segmentierung – Utilities" from High to Normal.
Fri, Feb 12, 12:23 PM · MITK
kalali placed T28136: Extend "Checkliste MultiLabel Segmentierung – Optionen" up for grabs.
Fri, Feb 12, 12:22 PM · MITK
kalali placed T28191: Refactor and extend LevelWindow unit tests up for grabs.
Fri, Feb 12, 12:22 PM · MITK
kalali placed T26988: [Checklist] LevelWindow checklist does not provide explicit expected results for sufficient verification up for grabs.
Fri, Feb 12, 12:17 PM · MITK, Restricted Project
kalali lowered the priority of T28204: Refactor LevelWindowManagerTest from High to Normal.
Fri, Feb 12, 12:12 PM · MITK
kalali edited projects for T28204: Refactor LevelWindowManagerTest, added: MITK; removed MITK (v2021.02).
Fri, Feb 12, 12:11 PM · MITK
nolden added a comment to T28302: MITK CI jobs for Kaapana.

Following this, are there some requirements that need to be specified here T28280?

Fri, Feb 12, 12:02 PM · CI, MITK
kalali edited projects for T26754: Review checklists, added: Next Milestone; removed MITK (v2021.02).
Fri, Feb 12, 11:51 AM · Next Milestone, Restricted Project
seidlits added a member for CAMI: j562r.
Fri, Feb 12, 11:21 AM
gaoh added a comment to T28302: MITK CI jobs for Kaapana.

Ah so the idea is not to build it, but to directly use a CI binary.
So MITK flow uses:

# Generate Ninja build script for MITK to build a minimum configuration with apps in Release mode into MITK-superbuild directory
RUN cmake -G Ninja -S MITK -B MITK-superbuild
RUN cmake -S MITK -B MITK-superbuild -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_TESTING:BOOL=OFF -D MITK_BUILD_CONFIGURATION:STRING=FlowBenchSegmentationRelease -D MITK_CUSTOM_REVISION_DESC:STRING=MitkFlow
RUN cmake --build MITK-superbuild
RUN cmake --build MITK-superbuild/MITK-build --target package 
RUN mkdir /opt/final_package
RUN cp /opt/MITK-superbuild/MITK-build/MITK-MitkFlow-linux-x86_64.tar.gz /opt/final_package/MITK-MitkFlow-linux-x86_64.tar.gz

And MITK volume (aka the normal workbench) uses the Release build with segmentation=ON

Fri, Feb 12, 10:01 AM · CI, MITK
gaoh added a comment to T28302: MITK CI jobs for Kaapana.

For MITK-flow and MITK-volume I will switch to the new release (release/T28000-v2021.02). It was only on a develop branch, because there were some bug fixes, not yet in a master branch.
But now with the new release...

Fri, Feb 12, 9:36 AM · CI, MITK
kislinsk edited the content of 2020 Week 39 (Late September).
Fri, Feb 12, 9:27 AM

Thu, Feb 11

kislinsk updated the task description for T28000: MITK v2021.02.
Thu, Feb 11, 11:12 PM · MITK-ProjectTemplate, MITK (v2021.02)