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Apr 21 2021

kleina added a comment to T28376: Blackbox class - reorder the loss function call try.

Your argument makes sense to me. I did not have a specific order in mind when implementing it, so I do not have any counterargument here.

Apr 21 2021, 12:17 PM · Hyppopy
kleina moved T28376: Blackbox class - reorder the loss function call try from Backlog to In Progress on the Hyppopy board.
Apr 21 2021, 12:15 PM · Hyppopy
kleina committed rOBSHYPPOPY7384c8cad833: Changed blackbox call. (authored by kleina).
Changed blackbox call.
Apr 21 2021, 12:06 PM
kleina closed T28298: Check for all print outputs in code base and convert them to log messages as Resolved by committing rOBSHYPPOPY8c13e7810091: Converted "print" outputs to "log" outputs..
Apr 21 2021, 12:06 PM · Hyppopy
kleina committed rOBSHYPPOPY8c13e7810091: Converted "print" outputs to "log" outputs. (authored by kleina).
Converted "print" outputs to "log" outputs.
Apr 21 2021, 12:06 PM
kleina claimed T28455: RT struct 3D visibility is not working correctly.
Apr 21 2021, 11:33 AM · MITK (v2021.10)
kleina triaged T28455: RT struct 3D visibility is not working correctly as Normal priority.
Apr 21 2021, 11:33 AM · MITK (v2021.10)
kleina moved T28455: RT struct 3D visibility is not working correctly from Backlog to Cycle on the MITK (v2021.10) board.
Apr 21 2021, 11:33 AM · MITK (v2021.10)
kleina edited projects for T28455: RT struct 3D visibility is not working correctly, added: MITK (v2021.10); removed MITK.
Apr 21 2021, 11:32 AM · MITK (v2021.10)
nolden created T28455: RT struct 3D visibility is not working correctly.
Apr 21 2021, 11:30 AM · MITK (v2021.10)
al-sabr added a comment to T27437: Migrate MITK to use ITK 5.x .

Is this task finished or if not when is it planned?

Apr 21 2021, 10:24 AM · MITK-ProjectTemplate, MITK (v2022.04)
kleina added a revision to T28298: Check for all print outputs in code base and convert them to log messages: Unknown Object (Differential Revision).
Apr 21 2021, 9:14 AM · Hyppopy
kleina reopened T28410: MPISolverWrapper's direct call of blackbox internal seems wrong as "Open".

Forgot something and didn't request review correctly. I will open this one agian.

Apr 21 2021, 8:33 AM · Hyppopy
kislinsk closed T28446: Migrate MatchPoint to ITK v5.1, a subtask of T27437: Migrate MITK to use ITK 5.x , as Resolved.
Apr 21 2021, 6:50 AM · MITK-ProjectTemplate, MITK (v2022.04)
kislinsk closed T28446: Migrate MatchPoint to ITK v5.1 as Resolved.
Apr 21 2021, 6:50 AM · MatchPoint, MITK (v2021.10)

Apr 20 2021

kleina committed rOBSHYPPOPYf1c392fea782: Converted "print" outputs to "log" outputs. (authored by kleina).
Converted "print" outputs to "log" outputs.
Apr 20 2021, 2:40 PM
s669m added a member for MIC: s539y.
Apr 20 2021, 11:59 AM
kislinsk committed rMP3e771a0f9115: Replace more itk::ImageIOBase enums with itk::IO...Enum enums (authored by kislinsk).
Replace more itk::ImageIOBase enums with itk::IO...Enum enums
Apr 20 2021, 7:30 AM
kislinsk committed rMPf7699d1ec6c8: Migrate TransformCategoryType to TransformCategoryEnum (authored by kislinsk).
Migrate TransformCategoryType to TransformCategoryEnum
Apr 20 2021, 7:30 AM

Apr 19 2021

kleina moved T28332: Support cascaded MPI processing from In Progress to Testing/Evaluations on the Hyppopy board.
Apr 19 2021, 5:23 PM · Hyppopy
kleina added a member for BVM: d587s.
Apr 19 2021, 3:36 PM
kleina added a member for BVM: m813r.
Apr 19 2021, 3:36 PM
wiesenfa created T28453: [external] Error when all metric values are the same.
Apr 19 2021, 9:26 AM · challengeR

Apr 17 2021

floca committed rMP2db6f51b2d78: Actualized sha1 check sum for litmus (authored by floca).
Actualized sha1 check sum for litmus
Apr 17 2021, 9:49 PM
floca committed rMP099aae381e4d: Fixed itk v5 changes in the Elastix wrapper. (authored by floca).
Fixed itk v5 changes in the Elastix wrapper.
Apr 17 2021, 9:49 PM
floca committed rMP43a30f4ce161: Incread version as ITK v5+ is now a hard requirement and breaking change (authored by floca).
Incread version as ITK v5+ is now a hard requirement and breaking change
Apr 17 2021, 1:05 PM
floca committed rMPc80a2604a0ad: Fixed identity mapper test (authored by floca).
Fixed identity mapper test
Apr 17 2021, 1:01 PM
floca committed rMP87d5a3f5b0d2: Updated Litmus code to work with itk v5 (authored by floca).
Updated Litmus code to work with itk v5
Apr 17 2021, 1:01 PM
floca committed rMP8f1cb93d8b7d: Fixed broken tests (authored by floca).
Fixed broken tests
Apr 17 2021, 1:01 PM
floca committed rMP09b0bbac10cf: To ease the migration to v5 the deprecated itk class (authored by floca).
To ease the migration to v5 the deprecated itk class
Apr 17 2021, 1:01 PM
floca committed rMP4d0051638273: Fixed broken code due to the switch to itk v5 (authored by floca).
Fixed broken code due to the switch to itk v5
Apr 17 2021, 1:01 PM
floca committed rMPc8b9c21272a5: Added diagnostic output in case of failing tests (authored by floca).
Added diagnostic output in case of failing tests
Apr 17 2021, 1:01 PM

Apr 15 2021

kleina committed rOBSHYPPOPYa340b927d14a: * Added alternative loss_function draft, that does not use a callback function. (authored by kleina).
* Added alternative loss_function draft, that does not use a callback function.
Apr 15 2021, 5:22 PM
kleina claimed T28332: Support cascaded MPI processing.

I updated the draft in the branch directly (same file).

Apr 15 2021, 5:02 PM · Hyppopy
kleina moved T28332: Support cascaded MPI processing from Backlog to In Progress on the Hyppopy board.
Apr 15 2021, 4:59 PM · Hyppopy
thomass committed rRTTB377303e52d4f: include different sampling strategy based on absolute mm (authored by thomass).
include different sampling strategy based on absolute mm
Apr 15 2021, 2:49 PM
kahl claimed T28437: 3D region growing may have issues when the seed point is on a pixel with value 0.
Apr 15 2021, 10:45 AM · MITK (v2021.10)
kahl moved T28437: 3D region growing may have issues when the seed point is on a pixel with value 0 from Segmentation to Cycle on the MITK (v2021.10) board.
Apr 15 2021, 10:44 AM · MITK (v2021.10)

Apr 14 2021

cnlnz triaged T28449: Examples VideoPlayer as Normal priority.
Apr 14 2021, 6:04 PM · Medical Detection Toolkit
kislinsk reassigned T28446: Migrate MatchPoint to ITK v5.1 from kislinsk to floca.

https://phabricator.mitk.org/source/matchpoint/history/T28446-MigrateToITKv5.1/

Apr 14 2021, 2:31 PM · MatchPoint, MITK (v2021.10)
kislinsk committed rMPe001b8fbc029: Do more mutex fixes (authored by kislinsk).
Do more mutex fixes
Apr 14 2021, 2:30 PM
kislinsk committed rMP7da4216a857d: MappingTaskBatch needs a more thorough migration (authored by kislinsk).
MappingTaskBatch needs a more thorough migration
Apr 14 2021, 2:30 PM
kislinsk committed rMP110d8364c3b5: Fix more NULL smart pointer initializations (authored by kislinsk).
Fix more NULL smart pointer initializations
Apr 14 2021, 2:30 PM
kislinsk committed rMP15b61e51f6ae: Do more enum replacements (authored by kislinsk).
Do more enum replacements
Apr 14 2021, 2:30 PM
kislinsk committed rMP6ecafd4d4b7a: Adapt threading-related API to ITK v5 (authored by kislinsk).
Adapt threading-related API to ITK v5
Apr 14 2021, 2:30 PM
kislinsk committed rMPad4619bd536d: [DOUBLE-CHECK THIS COMMIT] Migrate spatial objects (authored by kislinsk).
[DOUBLE-CHECK THIS COMMIT] Migrate spatial objects
Apr 14 2021, 2:30 PM
kislinsk committed rMP255e513cf781: Replace unsigned long return type of GetMTime() with itk::ModifiedTimeType (authored by kislinsk).
Replace unsigned long return type of GetMTime() with itk::ModifiedTimeType
Apr 14 2021, 2:30 PM
kislinsk committed rMP38d25ea84a08: Replace itksys::String with std::string (authored by kislinsk).
Replace itksys::String with std::string
Apr 14 2021, 2:30 PM
kislinsk committed rMP0837e06d97ff: Replace vcl_ math functions with std:: math functions (authored by kislinsk).
Replace vcl_ math functions with std:: math functions
Apr 14 2021, 2:30 PM
kislinsk committed rMP1a3628a9c04b: Replace ITK smart pointer NULL initialization with (implicit) nullptr… (authored by kislinsk).
Replace ITK smart pointer NULL initialization with (implicit) nullptr…
Apr 14 2021, 2:30 PM
kislinsk committed rMPc733cb3de98f: Replace itk::ImageIOBase enums with itk::IO...Enum enums (authored by kislinsk).
Replace itk::ImageIOBase enums with itk::IO...Enum enums
Apr 14 2021, 2:30 PM
kislinsk committed rMPeb6be9df7d3f: Replace itk::LoggerBase::PriorityLevelType with itk::LoggerBaseEnums… (authored by kislinsk).
Replace itk::LoggerBase::PriorityLevelType with itk::LoggerBaseEnums…
Apr 14 2021, 2:30 PM
kislinsk committed rMP9168cd710920: Replace ITK mutexes with std mutexes (authored by kislinsk).
Replace ITK mutexes with std mutexes
Apr 14 2021, 2:30 PM
kislinsk added a member for MatchPoint: kislinsk.
Apr 14 2021, 2:30 PM
j562r added a member for IMSY: m646a.
Apr 14 2021, 12:23 PM
a178n edited projects for T28354: Update MITK documentation on CMAKE build for plugins, added: MITK (v2021.10), Next Milestone; removed Missing Info, Restricted Project.
Apr 14 2021, 11:45 AM · Next Milestone, MITK (v2021.10)
thomass placed T27099: [MITKDoc] Revise Clipping Plane Plugin Documentation up for grabs.

Unassign myself because we removed the clipping plane from the release and have not discussed yet how to further proceed.

Apr 14 2021, 11:01 AM · MITK (v2024.06), Cleared
thomass reassigned T28406: [Segmentation] Examine Live-wire tool for different costfunctions/behavior from thomass to kleina.
Apr 14 2021, 11:00 AM · MITK
thomass updated subscribers of T28406: [Segmentation] Examine Live-wire tool for different costfunctions/behavior.

The first user feedback of the patch above was positive, the users liked the behavior.
However, the patch did not work correctly in terms of modifying the points afterwards (users were warned before).

Apr 14 2021, 10:48 AM · MITK
floca moved T27437: Migrate MITK to use ITK 5.x from Backlog to Cycle on the MITK (v2021.10) board.
Apr 14 2021, 10:39 AM · MITK-ProjectTemplate, MITK (v2022.04)
floca moved T28446: Migrate MatchPoint to ITK v5.1 from Backlog to Cycle on the MITK (v2021.10) board.
Apr 14 2021, 10:39 AM · MatchPoint, MITK (v2021.10)
thomass placed T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation up for grabs.
Apr 14 2021, 10:38 AM · MITK (v2021.10), Missing Info, Restricted Project
floca claimed T28248: [Segmentation] Picking 3D Tool creates a 3D segmentation out of a 4D image.
Apr 14 2021, 10:30 AM · MITK (v2021.10)
nolden added a comment to T27437: Migrate MITK to use ITK 5.x .

@kislinsk thanks for taking over. The WIP stuff I put on github still could be useful, see comment above. let me know if I can help.

Apr 14 2021, 9:57 AM · MITK-ProjectTemplate, MITK (v2022.04)
kislinsk triaged T28446: Migrate MatchPoint to ITK v5.1 as High priority.
Apr 14 2021, 9:56 AM · MatchPoint, MITK (v2021.10)
kislinsk claimed T27437: Migrate MITK to use ITK 5.x .
Apr 14 2021, 9:19 AM · MITK-ProjectTemplate, MITK (v2022.04)

Apr 12 2021

floca moved T28439: [Segmentation] Support custom background/outside values in image masking from Segmentation to Cycle on the MITK (v2021.10) board.
Apr 12 2021, 9:21 PM · MITK (v2021.10)
floca moved T28422: Multilabel color map does not produce unique colors from Segmentation to Cycle on the MITK (v2021.10) board.
Apr 12 2021, 9:20 PM · MITK (v2021.10)
floca moved T28421: Use whole image grey value must always be executed when switching colormap to 'Multilabel' from Segmentation to Cycle on the MITK (v2021.10) board.
Apr 12 2021, 9:20 PM · MITK (v2021.10)
floca moved T27637: [Segmentation] Multilabel label name dialog on label creation is a UX problem from Backlog to MITK Meeting on the Request for Discussion board.
Apr 12 2021, 9:19 PM · MITK (v2022.04), Cleared
floca moved T27637: [Segmentation] Multilabel label name dialog on label creation is a UX problem from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 12 2021, 9:19 PM · MITK (v2022.04), Cleared
floca edited projects for T27637: [Segmentation] Multilabel label name dialog on label creation is a UX problem, added: MITK (v2021.10); removed MITK.
Apr 12 2021, 9:19 PM · MITK (v2022.04), Cleared
floca moved T28144: CorrectorTool does not properly handle unlocked lables of LabelSet Images from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 12 2021, 9:18 PM · Request for Discussion, MITK (v2021.10)
floca moved T28144: CorrectorTool does not properly handle unlocked lables of LabelSet Images from Backlog to MITK Meeting on the Request for Discussion board.
Apr 12 2021, 9:18 PM · Request for Discussion, MITK (v2021.10)
floca added a comment to T28144: CorrectorTool does not properly handle unlocked lables of LabelSet Images.

We should discuss if we should not deprecate the old CorrectorTool completly because of several issues and because it adds only very small value to using add/substract with hotkeys directly.

Apr 12 2021, 9:18 PM · Request for Discussion, MITK (v2021.10)
floca edited projects for T28144: CorrectorTool does not properly handle unlocked lables of LabelSet Images, added: MITK (v2021.10), Request for Discussion; removed MITK.
Apr 12 2021, 9:16 PM · Request for Discussion, MITK (v2021.10)
floca moved T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures. from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 12 2021, 9:15 PM · MITK (v2022.10)
floca edited projects for T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures., added: MITK (v2021.10); removed MITK.
Apr 12 2021, 9:15 PM · MITK (v2022.10)
floca added a project to T28146: Rework how SegTool2D should add contour markers: Next Milestone.
Apr 12 2021, 9:14 PM · MITK (v2024.06)
floca added a project to T28259: Refactor the usage of QmitkSliceNavigationListener: Next Milestone.
Apr 12 2021, 9:13 PM · MITK (v2024.06)
floca committed rRTTB66d35bc657a1: Fixed linking errors for MutableDoseAccessorInterface (authored by floca).
Fixed linking errors for MutableDoseAccessorInterface
Apr 12 2021, 12:32 PM
floca committed rRTTBa6f309e075e5: Fixed dependencies of tests to TestHelper (authored by floca).
Fixed dependencies of tests to TestHelper
Apr 12 2021, 12:15 PM
kislinsk raised the priority of T27437: Migrate MITK to use ITK 5.x from Normal to High.
Apr 12 2021, 10:55 AM · MITK-ProjectTemplate, MITK (v2022.04)
kislinsk edited projects for T27437: Migrate MITK to use ITK 5.x , added: MITK (v2021.10); removed MITK.
Apr 12 2021, 10:54 AM · MITK-ProjectTemplate, MITK (v2022.04)

Apr 11 2021

thomass committed rRTTB051dec8f7167: try to make the test build work again wip (authored by thomass).
try to make the test build work again wip
Apr 11 2021, 5:49 PM
thomass committed rRTTBac212ba954f6: uncommented test snippet for now because not complete (authored by thomass).
uncommented test snippet for now because not complete
Apr 11 2021, 5:49 PM
thomass committed rRTTBaf580ef73263: Merge branch 'master' into feature/T27843-Add_gamma_index_to_RTTB (authored by thomass).
Merge branch 'master' into feature/T27843-Add_gamma_index_to_RTTB
Apr 11 2021, 5:49 PM
thomass committed rRTTBfe1e1968a7fc: fix for doseThreshold based on measuredDose instead of referenceDose (authored by thomass).
fix for doseThreshold based on measuredDose instead of referenceDose
Apr 11 2021, 5:49 PM

Apr 9 2021

floca moved T27149: [Segmentation] Interpolation nodes / position nodes are not correctly hidden from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 9 2021, 7:00 PM · MITK (v2024.06)
floca moved T25192: Enable DICOM SEG conversion for nrrd segmentations from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 9 2021, 7:00 PM · MITK (v2024.06), MICO (Demo MICCAI 2018)
floca moved T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 9 2021, 7:00 PM · MITK (v2024.06), Cleared
floca moved T27720: mitkPackageTest fails on Windows Nightlies from Backlog to Tests/Checklists on the MITK (v2021.10) board.
Apr 9 2021, 6:59 PM · MITK (v2024.06)
floca moved T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 9 2021, 6:59 PM · MITK (v2022.10), Cleared, Restricted Project
floca moved T28131: [MultiLabel Segmentation] 3D Threshold tool does not work with multiple labels / layers from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 9 2021, 6:59 PM · Request for Discussion, MITK (v2022.04)
floca moved T28134: [Multilabel Segmentation] No warning triggered when using different mask geometries / dimensions in Utilities View from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 9 2021, 6:59 PM · MITK (v2022.10), Cleared
floca moved T28135: [MultiLabel Segmentation] Utilities view cannot handle non-binary multilabel segmentations from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 9 2021, 6:59 PM · MITK (v2023.04)
floca moved T28139: [LabelSetImage] Ambigious meaning of "layer" in LabelSetImage from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 9 2021, 6:59 PM · MITK (v2023.12), Request for Discussion
floca moved T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 9 2021, 6:59 PM · MITK (v2024.06)
floca moved T28256: [Segmentation] Auto-selection preference was hijacked for something else from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 9 2021, 6:59 PM · Breaking Change, Request for Discussion, MITK (v2022.04)
floca edited projects for T27720: mitkPackageTest fails on Windows Nightlies, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 9 2021, 6:58 PM · MITK (v2024.06)