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Apr 28 2021

kahl committed rMITKf0703a7a08e9: modify region growing 3D to work with low seed point value (authored by kahl).
modify region growing 3D to work with low seed point value
Apr 28 2021, 12:06 PM
kahl committed rMITK068b2c265ba8: avoid underflows (authored by kahl).
avoid underflows
Apr 28 2021, 12:06 PM
kahl committed rMITKa3ee5afa1b98: modify region growing 3D to work with low seed point value (authored by kahl).
modify region growing 3D to work with low seed point value
Apr 28 2021, 12:06 PM
kahl closed T28437: 3D region growing may have issues when the seed point is on a pixel with value 0 as Resolved by committing rMITKa3ee5afa1b98: modify region growing 3D to work with low seed point value.
Apr 28 2021, 12:06 PM · MITK (v2021.10)

Apr 27 2021

thomass closed T27067: ImageCropper cannot crop some images (4d?) as Resolved.

The task as such is resolved. Another task with open questions from D279 is created with T28466

Apr 27 2021, 4:34 PM · MITK
thomass triaged T28466: [Image Cropper] Bounding shape cropper behavior not clear as Normal priority.
Apr 27 2021, 4:32 PM · Auto-closed, MITK

Apr 26 2021

eisenman moved T28465: Wrong numer of algorithms shown in report summary from In Progress to Done on the challengeR board.
Apr 26 2021, 12:07 PM · challengeR
eisenman committed rCHALLENGERa60677ce9cb2: Merge branch 'feature/T28465-FixNumberOfAlgorithms' into develop (authored by eisenman).
Merge branch 'feature/T28465-FixNumberOfAlgorithms' into develop
Apr 26 2021, 12:05 PM
eisenman committed rCHALLENGERd972cd37263d: Fix typo (authored by eisenman).
Fix typo
Apr 26 2021, 12:01 PM
eisenman committed rCHALLENGERe03b3780a56c: Fix extraction of algorithm count (authored by eisenman).
Fix extraction of algorithm count
Apr 26 2021, 12:01 PM
eisenman moved T28465: Wrong numer of algorithms shown in report summary from Backlog to In Progress on the challengeR board.
Apr 26 2021, 11:50 AM · challengeR
eisenman triaged T28465: Wrong numer of algorithms shown in report summary as High priority.
Apr 26 2021, 11:50 AM · challengeR
al-sabr added a comment to T27437: Migrate MITK to use ITK 5.x .

Fixed the task policy :D Did you get acces to it ?

Apr 26 2021, 10:32 AM · MITK-ProjectTemplate, MITK (v2022.04)
kislinsk edited the content of MITK v2021.02.
Apr 26 2021, 9:52 AM
wiesenfa added a comment to T28453: [external] Error when all metric values are the same.

@eisenman the change in develop branch has not been uploaded to GitHub, is this not automatically synchronized?. So the user who reported the bug still has the same problem. It would be good to merge into master as well

Apr 26 2021, 9:32 AM · challengeR
wiesenfa moved T28453: [external] Error when all metric values are the same from Done to In Progress on the challengeR board.
Apr 26 2021, 9:29 AM · challengeR
kislinsk added a comment to T27437: Migrate MITK to use ITK 5.x .

Can this also be matched with this other task I created?

https://phabricator.mitk.org/T28454

I only need help in one place if that part is cleared then I already refactored the Core to reflect the changes suitable for version 3.6.0 of CppMicroServices.

Apr 26 2021, 9:18 AM · MITK-ProjectTemplate, MITK (v2022.04)

Apr 25 2021

floca triaged T28464: [Segmentation] New Add/Remove tool as Normal priority.
Apr 25 2021, 9:59 PM · MITK (v2022.10)

Apr 23 2021

kalali moved T28462: [Conan] Build MatchPoint with ITK 5.1.0 recipe from Doing to Backlog on the MatchPoint board.
Apr 23 2021, 2:50 PM · MatchPoint, Restricted Project
kalali moved T28462: [Conan] Build MatchPoint with ITK 5.1.0 recipe from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Apr 23 2021, 2:50 PM · MatchPoint, Restricted Project
kalali placed T28462: [Conan] Build MatchPoint with ITK 5.1.0 recipe up for grabs.

I will put this up for grabs as it does not make sense to start a new project now. Personally I will investigate further after the Conan evaluation report has been written.

Apr 23 2021, 2:50 PM · MatchPoint, Restricted Project
kalali added a comment to T28462: [Conan] Build MatchPoint with ITK 5.1.0 recipe.

One long term solution would also be to create an own Litmus Conan recipe and use this external Litmus package inside MatchPoint.

Apr 23 2021, 1:24 PM · MatchPoint, Restricted Project
kalali added a comment to T28462: [Conan] Build MatchPoint with ITK 5.1.0 recipe.

I was trying to test if I can forward the ITK_USE_FILE variable inside the ExternalProject call to Litmus, as we did in the change for the CMAKE_PREFIX_PATH. I realized that neither the CMAKE_PREFIX_PATH nor the ITK_USE_FILE is correctly forwarded and accessible inside Litmus CMake configuration.

Apr 23 2021, 1:13 PM · MatchPoint, Restricted Project
wiesenfa added a comment to T28453: [external] Error when all metric values are the same.

now test case in test-report.R

Apr 23 2021, 1:01 PM · challengeR
wiesenfa committed rCHALLENGER00085cd910f5: T28453 (authored by wiesenfa).
T28453
Apr 23 2021, 1:00 PM
kalali moved T28462: [Conan] Build MatchPoint with ITK 5.1.0 recipe from Backlog to Doing on the MatchPoint board.
Apr 23 2021, 12:08 PM · MatchPoint, Restricted Project
kalali moved T28462: [Conan] Build MatchPoint with ITK 5.1.0 recipe from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Apr 23 2021, 12:07 PM · MatchPoint, Restricted Project
kalali added a comment to T28462: [Conan] Build MatchPoint with ITK 5.1.0 recipe.

I started looking into this and some changes need to be made in order to get some errors out of the way:

  • Conan-center recipes are built without CMake find / config files, as mentioned here: In short: Conan creates own find / config files so they are removed from the original package.
Apr 23 2021, 12:07 PM · MatchPoint, Restricted Project
eisenman added a comment to T28453: [external] Error when all metric values are the same.

Do you have a minimum example to reproduce this? Would be great to have that in the test checklists as well.

Apr 23 2021, 11:40 AM · challengeR
kahl added a revision to T28437: 3D region growing may have issues when the seed point is on a pixel with value 0: Unknown Object (Differential Revision).
Apr 23 2021, 10:26 AM · MITK (v2021.10)
kalali triaged T28462: [Conan] Build MatchPoint with ITK 5.1.0 recipe as Normal priority.
Apr 23 2021, 10:20 AM · MatchPoint, Restricted Project
kahl added a comment to T28437: 3D region growing may have issues when the seed point is on a pixel with value 0.

Pushed new branch to rMITK MITK: bugfix/T28437-RegionGrowing3DSeedPoint0.

Apr 23 2021, 10:02 AM · MITK (v2021.10)

Apr 22 2021

wiesenfa added a comment to T28453: [external] Error when all metric values are the same.

very simple fix in rankingHeatmap.challenge
@eisenman can this be merged into master branch?

Apr 22 2021, 10:30 PM · challengeR
wiesenfa moved T28453: [external] Error when all metric values are the same from In Progress to Done on the challengeR board.
Apr 22 2021, 10:28 PM · challengeR
wiesenfa moved T28453: [external] Error when all metric values are the same from Backlog to In Progress on the challengeR board.
Apr 22 2021, 10:27 PM · challengeR
wiesenfa committed rCHALLENGER6ceb955c61a3: Merge branch 'develop' of https://phabricator.mitk.org/source/challenger into… (authored by wiesenfa).
Merge branch 'develop' of https://phabricator.mitk.org/source/challenger into…
Apr 22 2021, 10:27 PM
wiesenfa committed rCHALLENGER3f5ea60c7f28: hotfix T28453 (authored by wiesenfa).
hotfix T28453
Apr 22 2021, 10:27 PM
floca added a comment to T28354: Update MITK documentation on CMAKE build for plugins.

could you make an arc diff. Then it is easier to review and comment in code. Thanks.

Apr 22 2021, 2:17 PM · Next Milestone, MITK (v2021.10)
thomass closed T28008: [Mapper] Levelwindow overwrites vtkLookUpTable Range with levelwindow range as Resolved.

Could be solved by @kislinsk suggestion to change rendering mode to LOOKUPTABLE_COLOR to not envoke the levelwindow to overwrite the range

Apr 22 2021, 1:30 PM · Request for Discussion, MITK
kalali moved T26989: [Checklist] GUI test data originates from different sources from Tests/Checklists to Cycle on the MITK (v2021.10) board.
Apr 22 2021, 12:18 PM · MITK (v2021.10)
kalali raised the priority of T26989: [Checklist] GUI test data originates from different sources from Normal to High.

I set the priority to high because we defined that having appropriate data at a reachable location is one of the most pressing issues when it comes to manual GUI tests.

Apr 22 2021, 12:11 PM · MITK (v2021.10)
kalali added a parent task for T26989: [Checklist] GUI test data originates from different sources: Unknown Object (Maniphest Task).
Apr 22 2021, 12:06 PM · MITK (v2021.10)
kalali moved T26989: [Checklist] GUI test data originates from different sources from Backlog to Tests/Checklists on the MITK (v2021.10) board.
Apr 22 2021, 12:06 PM · MITK (v2021.10)
kalali edited projects for T26989: [Checklist] GUI test data originates from different sources, added: MITK (v2021.10); removed Request for Discussion, MITK.
Apr 22 2021, 12:06 PM · MITK (v2021.10)
thomass committed rRTTBed98724bd7ae: Added tests for value comparison (authored by thomass).
Added tests for value comparison
Apr 22 2021, 10:52 AM
al-sabr added a comment to T27437: Migrate MITK to use ITK 5.x .

Can this also be matched with this other task I created?

Apr 22 2021, 10:33 AM · MITK-ProjectTemplate, MITK (v2022.04)
kleina committed rOBSHYPPOPY04b807b9d85f: Added .arcconfig (authored by kleina).
Added .arcconfig
Apr 22 2021, 10:26 AM
kleina closed T28410: MPISolverWrapper's direct call of blackbox internal seems wrong as Resolved by committing rOBSHYPPOPYace9c97f5ba3: Fixed MPISolverWrapper's direct call of blackbox internal.
Apr 22 2021, 10:08 AM · Hyppopy
kleina committed rOBSHYPPOPYace9c97f5ba3: Fixed MPISolverWrapper's direct call of blackbox internal (authored by kleina).
Fixed MPISolverWrapper's direct call of blackbox internal
Apr 22 2021, 10:08 AM
schererj reopened T28458: Airflow-App as "Open".
Apr 22 2021, 9:33 AM · Kaapana (internal)
a178n added a comment to T28354: Update MITK documentation on CMAKE build for plugins.

Changes are pushed into the new branch T28353-cmake_faq branch.

Apr 22 2021, 7:25 AM · Next Milestone, MITK (v2021.10)
a178n added a comment to T28354: Update MITK documentation on CMAKE build for plugins.

Pushed new branch to rMITK MITK: feature/T28354-cmake_faq.

Apr 22 2021, 7:17 AM · Next Milestone, MITK (v2021.10)

Apr 21 2021

kislinsk added a comment to T27437: Migrate MITK to use ITK 5.x .

Is this task finished or if not when is it planned?

Apr 21 2021, 10:19 PM · MITK-ProjectTemplate, MITK (v2022.04)
kislinsk added a comment to T27437: Migrate MITK to use ITK 5.x .

Pushed new branch to rMITK MITK: feature/T27437-ITK-v5.1.

Apr 21 2021, 10:16 PM · MITK-ProjectTemplate, MITK (v2022.04)
m139l closed T28458: Airflow-App as Resolved.
Apr 21 2021, 7:53 PM · Kaapana (internal)
floca moved T27189: REST API for data storage from Backlog to MaaS on the MITK (v2021.10) board.
Apr 21 2021, 6:56 PM · MITK (v2024.06), Restricted Project, Request for Discussion
floca edited projects for T27189: REST API for data storage, added: MITK (v2021.10); removed MITK.
Apr 21 2021, 6:56 PM · MITK (v2024.06), Restricted Project, Request for Discussion
kleina reopened T28410: MPISolverWrapper's direct call of blackbox internal seems wrong as "Open".
Apr 21 2021, 4:12 PM · Hyppopy
kleina committed rOBSHYPPOPY727320895a4e: Removed deprecated loss_function_batch_call (authored by kleina).
Removed deprecated loss_function_batch_call
Apr 21 2021, 3:57 PM
kleina committed rOBSHYPPOPY543bba87253a: Make sure fallback only gets executed when batch_call fails. (authored by kleina).
Make sure fallback only gets executed when batch_call fails.
Apr 21 2021, 3:33 PM
kleina closed T28410: MPISolverWrapper's direct call of blackbox internal seems wrong as Resolved by committing rOBSHYPPOPYa2cfa7ce75ac: Fixed MPISolverWrapper's direct call of blackbox internal.
Apr 21 2021, 3:33 PM · Hyppopy
kleina committed rOBSHYPPOPYa2cfa7ce75ac: Fixed MPISolverWrapper's direct call of blackbox internal (authored by kleina).
Fixed MPISolverWrapper's direct call of blackbox internal
Apr 21 2021, 3:32 PM
kleina added a project to T28300: [MPI] MPI as a general dependency might be problematic: Request for Discussion.
Apr 21 2021, 3:27 PM · Request for Discussion, Hyppopy
kleina moved T28376: Blackbox class - reorder the loss function call try from In Progress to Done on the Hyppopy board.
Apr 21 2021, 3:25 PM · Hyppopy
kleina moved T28298: Check for all print outputs in code base and convert them to log messages from In Progress to Done on the Hyppopy board.
Apr 21 2021, 3:25 PM · Hyppopy
kleina closed T28376: Blackbox class - reorder the loss function call try as Resolved by committing rOBSHYPPOPY5f8b57e426c0: Reordered the loss function call try..
Apr 21 2021, 3:25 PM · Hyppopy
kleina committed rOBSHYPPOPY5f8b57e426c0: Reordered the loss function call try. (authored by kleina).
Reordered the loss function call try.
Apr 21 2021, 3:25 PM
kleina added a revision to T28376: Blackbox class - reorder the loss function call try: Unknown Object (Differential Revision).
Apr 21 2021, 1:21 PM · Hyppopy
kleina committed rOBSHYPPOPYe704bebf3217: Reordered the loss function call try. (authored by kleina).
Reordered the loss function call try.
Apr 21 2021, 1:16 PM
kleina removed a project from T28376: Blackbox class - reorder the loss function call try: Request for Discussion.
Apr 21 2021, 1:13 PM · Hyppopy
kleina moved T28410: MPISolverWrapper's direct call of blackbox internal seems wrong from In Progress to Done on the Hyppopy board.
Apr 21 2021, 1:12 PM · Hyppopy
kleina added a revision to T28410: MPISolverWrapper's direct call of blackbox internal seems wrong: Unknown Object (Differential Revision).
Apr 21 2021, 1:10 PM · Hyppopy
kleina committed rOBSHYPPOPY19e487728222: Converted "print" outputs to "log" outputs. (authored by kleina).
Converted "print" outputs to "log" outputs.
Apr 21 2021, 1:01 PM
floca added a comment to T28376: Blackbox class - reorder the loss function call try.

Thanks

Apr 21 2021, 12:19 PM · Hyppopy
kleina moved T28410: MPISolverWrapper's direct call of blackbox internal seems wrong from Done to In Progress on the Hyppopy board.
Apr 21 2021, 12:18 PM · Hyppopy
kleina added a comment to T28376: Blackbox class - reorder the loss function call try.

Your argument makes sense to me. I did not have a specific order in mind when implementing it, so I do not have any counterargument here.

Apr 21 2021, 12:17 PM · Hyppopy
kleina moved T28376: Blackbox class - reorder the loss function call try from Backlog to In Progress on the Hyppopy board.
Apr 21 2021, 12:15 PM · Hyppopy
kleina committed rOBSHYPPOPY7384c8cad833: Changed blackbox call. (authored by kleina).
Changed blackbox call.
Apr 21 2021, 12:06 PM
kleina closed T28298: Check for all print outputs in code base and convert them to log messages as Resolved by committing rOBSHYPPOPY8c13e7810091: Converted "print" outputs to "log" outputs..
Apr 21 2021, 12:06 PM · Hyppopy
kleina committed rOBSHYPPOPY8c13e7810091: Converted "print" outputs to "log" outputs. (authored by kleina).
Converted "print" outputs to "log" outputs.
Apr 21 2021, 12:06 PM
kleina claimed T28455: RT struct 3D visibility is not working correctly.
Apr 21 2021, 11:33 AM · MITK (v2021.10)
kleina triaged T28455: RT struct 3D visibility is not working correctly as Normal priority.
Apr 21 2021, 11:33 AM · MITK (v2021.10)
kleina moved T28455: RT struct 3D visibility is not working correctly from Backlog to Cycle on the MITK (v2021.10) board.
Apr 21 2021, 11:33 AM · MITK (v2021.10)
kleina edited projects for T28455: RT struct 3D visibility is not working correctly, added: MITK (v2021.10); removed MITK.
Apr 21 2021, 11:32 AM · MITK (v2021.10)
nolden created T28455: RT struct 3D visibility is not working correctly.
Apr 21 2021, 11:30 AM · MITK (v2021.10)
al-sabr added a comment to T27437: Migrate MITK to use ITK 5.x .

Is this task finished or if not when is it planned?

Apr 21 2021, 10:24 AM · MITK-ProjectTemplate, MITK (v2022.04)
kleina added a revision to T28298: Check for all print outputs in code base and convert them to log messages: Unknown Object (Differential Revision).
Apr 21 2021, 9:14 AM · Hyppopy
kleina reopened T28410: MPISolverWrapper's direct call of blackbox internal seems wrong as "Open".

Forgot something and didn't request review correctly. I will open this one agian.

Apr 21 2021, 8:33 AM · Hyppopy
kislinsk closed T28446: Migrate MatchPoint to ITK v5.1, a subtask of T27437: Migrate MITK to use ITK 5.x , as Resolved.
Apr 21 2021, 6:50 AM · MITK-ProjectTemplate, MITK (v2022.04)
kislinsk closed T28446: Migrate MatchPoint to ITK v5.1 as Resolved.
Apr 21 2021, 6:50 AM · MatchPoint, MITK (v2021.10)

Apr 20 2021

kleina committed rOBSHYPPOPYf1c392fea782: Converted "print" outputs to "log" outputs. (authored by kleina).
Converted "print" outputs to "log" outputs.
Apr 20 2021, 2:40 PM
s669m added a member for MIC: s539y.
Apr 20 2021, 11:59 AM
kislinsk committed rMP3e771a0f9115: Replace more itk::ImageIOBase enums with itk::IO...Enum enums (authored by kislinsk).
Replace more itk::ImageIOBase enums with itk::IO...Enum enums
Apr 20 2021, 7:30 AM
kislinsk committed rMPf7699d1ec6c8: Migrate TransformCategoryType to TransformCategoryEnum (authored by kislinsk).
Migrate TransformCategoryType to TransformCategoryEnum
Apr 20 2021, 7:30 AM

Apr 19 2021

kleina moved T28332: Support cascaded MPI processing from In Progress to Testing/Evaluations on the Hyppopy board.
Apr 19 2021, 5:23 PM · Hyppopy
kleina added a member for BVM: d587s.
Apr 19 2021, 3:36 PM
kleina added a member for BVM: m813r.
Apr 19 2021, 3:36 PM
wiesenfa created T28453: [external] Error when all metric values are the same.
Apr 19 2021, 9:26 AM · challengeR

Apr 17 2021

floca committed rMP2db6f51b2d78: Actualized sha1 check sum for litmus (authored by floca).
Actualized sha1 check sum for litmus
Apr 17 2021, 9:49 PM
floca committed rMP099aae381e4d: Fixed itk v5 changes in the Elastix wrapper. (authored by floca).
Fixed itk v5 changes in the Elastix wrapper.
Apr 17 2021, 9:49 PM