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Aug 26 2021

p212r committed rKAAPANA6de18f5d0177: add prediction adjustments (authored by schererj).
add prediction adjustments
Aug 26 2021, 10:33 AM
p212r committed rKAAPANA2d871259aa35: add prediction adjustments (authored by schererj).
add prediction adjustments
Aug 26 2021, 10:33 AM
p212r committed rKAAPANAd24c0e824987: fixed in doccano (authored by k656s).
fixed in doccano
Aug 26 2021, 10:33 AM
p212r committed rKAAPANAbaa0447d4051: added doccano as extension (authored by k656s).
added doccano as extension
Aug 26 2021, 10:33 AM
s669m moved T28653: website feedbacks - comments from Ralf from In Progress to Resolved on the Kaapana (internal) board.
Aug 26 2021, 10:15 AM · Request for Discussion, Kaapana (internal)
s669m moved T28674: How to get the Installed-Extention based applications url for backend ? from Discussion to In Progress on the Kaapana (internal) board.
Aug 26 2021, 10:12 AM · Request for Discussion, Kaapana (internal)

Aug 25 2021

k656s committed rKAAPANAf4360071f34c: fixed in importing tar installer script (authored by k656s).
fixed in importing tar installer script
Aug 25 2021, 11:51 PM
s434n closed T28631: [PACS] Allow disabling of PACS tools, a subtask of T26485: [Segmentation] PACS mode is active while segmentation is drawn, as Resolved.
Aug 25 2021, 5:29 PM · MITK (v2021.10)
s434n closed T28631: [PACS] Allow disabling of PACS tools as Resolved.
Aug 25 2021, 5:29 PM · MITK (v2021.10)
s434n triaged T28677: [Interaction] Disabling and reenabling PACS like interaction resets functionality but not UI as Low priority.
Aug 25 2021, 4:44 PM · MITK
s434n added a comment to T28629: [ImageCropper] PACS mode is active while bounding box is drawn.

Possible duplicate of T28278? That task's description is not very clear about the problem, but could be referencing the same thing

Aug 25 2021, 4:30 PM · MITK (v2021.10)
s434n committed rMITK16844f3905fc: Allow disabling of PACS tools by manually ensuring exclusivity (authored by s434n).
Allow disabling of PACS tools by manually ensuring exclusivity
Aug 25 2021, 4:12 PM
s434n committed rMITKd5dffec8590d: Set width of PACS toolbar to fixed size to avoid changing render window size (authored by s434n).
Set width of PACS toolbar to fixed size to avoid changing render window size
Aug 25 2021, 4:12 PM
s434n committed rMITKb9777d160b30: manually implement optional-exclusive behavior of PACS tools (authored by s434n).
manually implement optional-exclusive behavior of PACS tools
Aug 25 2021, 4:12 PM
s434n committed rMITK0d2e45aed5ee: split crosshair-specific part of PACS config into separate file (authored by s434n).
split crosshair-specific part of PACS config into separate file
Aug 25 2021, 4:12 PM
kalali added a revision to T26486: PACS mouse mode does not allow scrolling with mouse wheel: Unknown Object (Differential Revision).
Aug 25 2021, 2:27 PM · Breaking Change, MITK (v2021.10)
kalali removed a project from T26486: PACS mouse mode does not allow scrolling with mouse wheel: Restricted Project.
Aug 25 2021, 1:38 PM · Breaking Change, MITK (v2021.10)
kalali claimed T24358: Rework QmitkMouseModeSwitcher.
Aug 25 2021, 1:19 PM · MITK
kalali claimed T24357: Rework mitkMouseModeSwitcher.
Aug 25 2021, 1:19 PM · MITK
kalali added a revision to T24357: Rework mitkMouseModeSwitcher: Unknown Object (Differential Revision).
Aug 25 2021, 1:18 PM · MITK
kalali added a revision to T24358: Rework QmitkMouseModeSwitcher: Unknown Object (Differential Revision).
Aug 25 2021, 11:57 AM · MITK
kalali added a revision to T24368: Interaction scheme has different level of interaction: Restricted Differential Revision.
Aug 25 2021, 11:33 AM · MITK
k656s committed rKAAPANA1622d8a75734: minor fix (authored by k656s).
minor fix
Aug 25 2021, 9:29 AM
kalali reopened T26486: PACS mouse mode does not allow scrolling with mouse wheel, a subtask of T24356: Rework mouse mode switcher, as Open.
Aug 25 2021, 9:18 AM · MITK
kalali reopened T26486: PACS mouse mode does not allow scrolling with mouse wheel as "Open".

This task / branch was never merged into master.
For reasons of cleanliness I will open a new branch / differential containing just the changes related to this task such that we can merge the new branch into develop and close this task.
@s434n will help me evaluate the relevance / validity of the changes.

Aug 25 2021, 9:18 AM · Breaking Change, MITK (v2021.10)
kalali added a subtask for T24356: Rework mouse mode switcher: T26486: PACS mouse mode does not allow scrolling with mouse wheel.
Aug 25 2021, 9:17 AM · MITK
kalali edited parent tasks for T26486: PACS mouse mode does not allow scrolling with mouse wheel, added: T24356: Rework mouse mode switcher; removed: Unknown Object (Maniphest Task).
Aug 25 2021, 9:17 AM · Breaking Change, MITK (v2021.10)

Aug 24 2021

k656s committed rKAAPANA7ef817640b5c: adapted registry version (authored by k656s).
adapted registry version
Aug 24 2021, 7:12 PM
k656s committed rKAAPANA177c2f363434: minor fixed in postgresql dicom-init prometheus and integration of tar… (authored by k656s).
minor fixed in postgresql dicom-init prometheus and integration of tar…
Aug 24 2021, 7:01 PM
kalali updated subscribers of T24357: Rework mitkMouseModeSwitcher.

This task / branch was never merged into master; the mentioned BlackSwan task T26476 is still not contained in master / develop.
For reasons of cleanliness I will open a new branch / differential containing just the changes related to this task such that we can merge the new branch into develop and close this task.
@s434n will help me evaluate the relevance / validity of the changes.

Aug 24 2021, 5:43 PM · MITK
kalali updated subscribers of T24358: Rework QmitkMouseModeSwitcher.

This task / branch was never merged into master; the mentioned BlackSwan task T26476 is still not contained in master / develop.
For reasons of cleanliness I will open a new branch / differential containing just the changes related to this task such that we can merge the new branch into develop and close this task.
@s434n will help me evaluate the relevance / validity of the changes.

Aug 24 2021, 5:43 PM · MITK
kalali reopened T24368: Interaction scheme has different level of interaction as "Open".

This task / branch was never merged into master; the mentioned BlackSwan task T26476 is still not contained in master / develop.
For reasons of cleanliness I will open a new branch / differential containing just the changes related to this task such that we can merge the new branch into develop and close this task.
@s434n will help me evaluate the relevance / validity of the changes.

Aug 24 2021, 5:42 PM · MITK
kalali reopened T24368: Interaction scheme has different level of interaction, a subtask of T24356: Rework mouse mode switcher, as Open.
Aug 24 2021, 5:42 PM · MITK
kalali updated the task description for T24368: Interaction scheme has different level of interaction.
Aug 24 2021, 5:11 PM · MITK
kalali removed a parent task for T26492: [mxn multi widget] Send active render window: Unknown Object (Maniphest Task).
Aug 24 2021, 4:55 PM · Breaking Change, MITK (v2021.10)
kalali added a comment to T27713: [Segmentation] Disable "New" button when no image is selected.

I started working on T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation which makes this task and some mentioned bugs invalid. We can close this task, once D533 is landed. The "New"-button is correctly enabled / disabled using the mentioned changes / differential and some warning messages were removed / simplified.

Aug 24 2021, 4:53 PM · MITK (v2021.10), Request for Discussion
a178n added a comment to T28491: Slice interpolation 'confirm for all slices' sometimes crahes.

2- Tests using tmp_cropped.nii.gz

Aug 24 2021, 3:54 PM · MITK (v2021.10)
kalali updated subscribers of T24356: Rework mouse mode switcher.
Aug 24 2021, 3:54 PM · MITK
a178n added a comment to T28491: Slice interpolation 'confirm for all slices' sometimes crahes.

1- Tests using tmp.nii.gz
We tested multiple times the following workflow:

Aug 24 2021, 3:48 PM · MITK (v2021.10)
a178n added a comment to T28491: Slice interpolation 'confirm for all slices' sometimes crahes.

I did some testing (with Amir) on ubuntu 20.04 (32GB RAM). The issue could be replicated with a questionable increase in the utilization of RAM.
Fabian provided us a couple of files for testing, viz. tmp.nii.gz and tmp_cropped.nii.gz (same content, just removed some of the zeros around the ROI)

Aug 24 2021, 3:33 PM · MITK (v2021.10)
kalali added a comment to T28491: Slice interpolation 'confirm for all slices' sometimes crahes.

I looked into this using the latest Develop-branch on Windows. Using the Debug build I was able to see the stack trace after a crash (using the small, cropped image):

Exception Unhandled:
Unhandled exception at 0x00007FF96A63AFAC (ucrtbased.dll) in MitkWorkbench.exe: An invalid parameter was passed to a function that considers invalid parameters fatal.
Aug 24 2021, 2:57 PM · MITK (v2021.10)
isensee reopened T28491: Slice interpolation 'confirm for all slices' sometimes crahes as "Open".
Aug 24 2021, 10:38 AM · MITK (v2021.10)
isensee updated subscribers of T28491: Slice interpolation 'confirm for all slices' sometimes crahes.

This is still not fixed, can we please re-open it?

Aug 24 2021, 10:38 AM · MITK (v2021.10)
isensee renamed T28675: Boolean Operations in Segmentation utilities are slow from Boolean Operations in Segmentation utilities are excruciatingly slow to Boolean Operations in Segmentation utilities are slow.
Aug 24 2021, 10:31 AM · MITK (v2021.10)
isensee created T28675: Boolean Operations in Segmentation utilities are slow.
Aug 24 2021, 10:28 AM · MITK (v2021.10)

Aug 23 2021

kalali claimed T28650: [Selection concept] (Re)setting a data storage does not automatically check for matching nodes.
Aug 23 2021, 5:24 PM · MITK (v2021.10)
kalali added a revision to T28650: [Selection concept] (Re)setting a data storage does not automatically check for matching nodes: Unknown Object (Differential Revision).
Aug 23 2021, 5:23 PM · MITK (v2021.10)
kalali added a revision to T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation: Unknown Object (Differential Revision).
Aug 23 2021, 1:17 PM · Breaking Change, Next Milestone, MITK
kalali moved T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation from Segmentation to Cycle on the MITK (v2021.10) board.
Aug 23 2021, 1:16 PM · Breaking Change, Next Milestone, MITK
kalali claimed T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.
Aug 23 2021, 1:16 PM · Breaking Change, Next Milestone, MITK

Aug 20 2021

k688h committed rKAAPANAb2b273ec72a3: Modify parameter name in http trigger script (authored by k688h).
Modify parameter name in http trigger script
Aug 20 2021, 5:25 PM
k688h committed rKAAPANA78728798388f: Add TERM env var to Ansible before installations (authored by k688h).
Add TERM env var to Ansible before installations
Aug 20 2021, 5:25 PM
k688h committed rKAAPANAdb90c29ae2d6: Comment a line used only for debugging (authored by k688h).
Comment a line used only for debugging
Aug 20 2021, 2:53 PM
k688h committed rKAAPANA8c45eb24df09: Uncomment passing of branch arg to CI HTTP trigger (authored by k688h).
Uncomment passing of branch arg to CI HTTP trigger
Aug 20 2021, 2:41 PM
k688h committed rKAAPANA77369e1d5102: Change warning message in CI HTTP API trigger script (authored by k688h).
Change warning message in CI HTTP API trigger script
Aug 20 2021, 2:40 PM
k688h committed rKAAPANA786cf03c144d: Add openstack usr pw args to ci http server script (authored by k688h).
Add openstack usr pw args to ci http server script
Aug 20 2021, 2:13 PM
k688h committed rKAAPANAfb97c599f45c: Add args for registry url pwd and user to http ci trigger (authored by k688h).
Add args for registry url pwd and user to http ci trigger
Aug 20 2021, 1:13 PM
s669m triaged T28674: How to get the Installed-Extention based applications url for backend ? as Normal priority.
Aug 20 2021, 1:01 PM · Request for Discussion, Kaapana (internal)
k656s committed rKAAPANAeaba9c12381d: remove line hight in doccano (authored by k656s).
remove line hight in doccano
Aug 20 2021, 11:48 AM
s522r added a member for MIC: l727n.
Aug 20 2021, 8:36 AM

Aug 19 2021

k688h committed rKAAPANAb51bed750938: Update name of Ansible task which runs http ci server (authored by k688h).
Update name of Ansible task which runs http ci server
Aug 19 2021, 5:29 PM
schererj committed rKAAPANAee25c400a746: Merge branch 'feature/adjustments' into feature/racoon (authored by schererj).
Merge branch 'feature/adjustments' into feature/racoon
Aug 19 2021, 4:16 PM
schererj committed rKAAPANA2c3f50fa50e8: adjustments (authored by schererj).
adjustments
Aug 19 2021, 4:16 PM
schererj committed rKAAPANA53c6e72cd80b: lots of adjustments + RTSTRUCT support (authored by schererj).
lots of adjustments + RTSTRUCT support
Aug 19 2021, 4:16 PM
schererj committed rKAAPANA3cb98ea4ffd0: nnunet rtstruct support (authored by schererj).
nnunet rtstruct support
Aug 19 2021, 4:16 PM
schererj committed rKAAPANA07e49b035d2a: added seg_info template (authored by schererj).
added seg_info template
Aug 19 2021, 4:16 PM
schererj committed rKAAPANAfc25a925838c: added RT-Struct conversion (authored by schererj).
added RT-Struct conversion
Aug 19 2021, 4:16 PM
schererj committed rKAAPANA4fae4876fd2d: added dcm RTSTRUCT support to LocalGetRefSeriesOperator (authored by schererj).
added dcm RTSTRUCT support to LocalGetRefSeriesOperator
Aug 19 2021, 4:16 PM
schererj committed rKAAPANA0ceabfa0694c: launcher adjutments (authored by schererj).
launcher adjutments
Aug 19 2021, 4:16 PM
schererj committed rKAAPANA6946270c16b2: monitoring re-tries (authored by schererj).
monitoring re-tries
Aug 19 2021, 4:16 PM
kalali added a comment to T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.

I refactored both views massively. What I did was to somehow bring both plugins in line with each other to see the differences and the similarities. This simplifies to understand how things are implemented and what needs to be done to remove redundancy. I will highlight some points that I find striking:

  • the multilabel plugin view did not compare the world geometry to the selected segmentation node
    • I was able to draw a mask which was then positioned somewhere else (jumped) because of this (e.g. using brain.nrrd)
  • hiding the selected segmentation node disables the tools for the segmentation plugin but not for the multilabel segmentation plugin
  • the auto selection mode for showing / hiding the selected / not selected nodes in the data manager / render windows if the node selection is changed does not work anymore for the segmentation plugin (was already mentioned in T28256: Auto-selection preference for Segmentation View was hijacked for something else)
  • the multilabel segmentation plugin did not listen to render window part changes (no subclass of IRenderWindowPartListener)
  • the multilabel segmentation plugin lists some segmentation tools that don't even exist (FastMarching2D, Two Thresholds Auto Threshold Multiple Otsu)
  • the multilabel segmentation view plugin is not able to accept binary images as a segmentation
Aug 19 2021, 9:24 AM · Breaking Change, Next Milestone, MITK

Aug 18 2021

k688h committed rKAAPANA21f504bfe97c: Remove comment (authored by k688h).
Remove comment
Aug 18 2021, 2:19 PM
k688h committed rKAAPANAaef27484774c: Move sleep method before starting UI tests (authored by k688h).
Move sleep method before starting UI tests
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA77443bcee68b: Update latest credentials and link to CI dashboard in CI Readme (authored by k688h).
Update latest credentials and link to CI dashboard in CI Readme
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA90a113d13174: Update incomplete path for server install script (authored by k688h).
Update incomplete path for server install script
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA54a484f6d7b3: Update incorrect server install script path (authored by k688h).
Update incorrect server install script path
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA47b02d08aaec: Update regex to replace only first occurence (authored by k688h).
Update regex to replace only first occurence
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA5f6be41cc804: Support to install directly from local scripts instead of downloading (authored by k688h).
Support to install directly from local scripts instead of downloading
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA295d53ea35b8: Update name of OpenStack Kaapana CI project name (authored by k688h).
Update name of OpenStack Kaapana CI project name
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA45257e081910: Add support to make CentOS deployment tests in CI (authored by k688h).
Add support to make CentOS deployment tests in CI
Aug 18 2021, 2:19 PM
k688h committed rKAAPANAe00f27eea025: Update default CI username (authored by k688h).
Update default CI username
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA282aa0fe91fa: Add template to ask for registry URL for setup CI server playbook (authored by k688h).
Add template to ask for registry URL for setup CI server playbook
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA0b5303570a8d: Add email notification option to cronjob definition (authored by k688h).
Add email notification option to cronjob definition
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA645e74802869: Change log type for a return code (authored by k688h).
Change log type for a return code
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA122dfa735c67: Update OpenStack CentOS version numbers in playbook (authored by k688h).
Update OpenStack CentOS version numbers in playbook
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA6623f54949eb: Add TERM env var to cronjob in create CI server playbook (authored by k688h).
Add TERM env var to cronjob in create CI server playbook
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA3989ca1da0ed: Change names of some input parameters where registry name was part of their name (authored by k688h).
Change names of some input parameters where registry name was part of their name
Aug 18 2021, 2:19 PM
k688h committed rKAAPANAecc525dcbe2d: Create variable to store path of bash script (authored by k688h).
Create variable to store path of bash script
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA464b8a83e0b6: Push code to test cronjobs after ci pipeline script successfully running (authored by k688h).
Push code to test cronjobs after ci pipeline script successfully running
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA99cc4c3f4b33: Update version number of chromedriver and remove specific version tag for… (authored by k688h).
Update version number of chromedriver and remove specific version tag for…
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA2929324a45d2: Add http_proxy as argument for ci pipeline script (authored by k688h).
Add http_proxy as argument for ci pipeline script
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA24e9e277d574: Uncomment part that pushes charts and containers (authored by k688h).
Uncomment part that pushes charts and containers
Aug 18 2021, 2:19 PM
k688h committed rKAAPANAebec16dd99f8: Change name of folder containing build scripts according to PEP8 Python Style (authored by k688h).
Change name of folder containing build scripts according to PEP8 Python Style
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA1b70569103f4: Change name of build helper scripts inside CI folder to differentiate from… (authored by k688h).
Change name of build helper scripts inside CI folder to differentiate from…
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA7f4e50c0615c: Add sleep time of 5 mins before UI tests start to let kaapana platform pods get… (authored by k688h).
Add sleep time of 5 mins before UI tests start to let kaapana platform pods get…
Aug 18 2021, 2:19 PM
k688h committed rKAAPANAb918825e4046: Update folder name of build config in build script (authored by k688h).
Update folder name of build config in build script
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA73f835a4e9b6: Ask for full registry link instead of just GitLab project name for deployment… (authored by k688h).
Ask for full registry link instead of just GitLab project name for deployment…
Aug 18 2021, 2:19 PM
k688h committed rKAAPANA1c68a105523d: Remove unnecessary code (authored by k688h).
Remove unnecessary code
Aug 18 2021, 2:19 PM
k688h committed rKAAPANAf667d6e4f0f1: Change variable name from containing gitlab to only registry (authored by k688h).
Change variable name from containing gitlab to only registry
Aug 18 2021, 2:19 PM
k688h committed rKAAPANAc6e7f1daa91f: Change default instance name (authored by k688h).
Change default instance name
Aug 18 2021, 2:19 PM