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Oct 14 2021
Oct 14 2021
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kislinsk closed T26366: [ModelFitInspector] Fixed scaling doesn't work yet, a subtask of T25832: Migrate ModelFit inspector plugin to MitkChart, as Wontfix.
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kislinsk closed T26371: MITK crash when starting tracking during editing tool information as Wontfix.
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kislinsk closed T26367: [ModelFitInspector] Remove bookmark doesn't work, a subtask of T25832: Migrate ModelFit inspector plugin to MitkChart, as Wontfix.
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kislinsk closed T26674: Statistics calculation crashes for planar figure size covering less than half a voxel as Wontfix.
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kislinsk closed T26631: Tool not correctly visualized when tool tip edited in IGT Navigation Tool Manager as Wontfix.
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kislinsk closed T26565: Workbench crashes when 'Stop Calibration with PLUS' button in PLUS Connection tab is clicked twice as Wontfix.
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kislinsk moved T28735: Relative paths in arguments for MitkFileConverter interpreted as root paths from Backlog to Cycle on the MITK (v2021.10) board.
Maybe related to / has similarities to {T28633}.
kislinsk triaged T28735: Relative paths in arguments for MitkFileConverter interpreted as root paths as Normal priority.
All Differential clients include MITK-ProjectTemplate builds.
kislinsk edited projects for T27437: Migrate MITK to use ITK 5.x , added: MITK; removed MITK (v2021.10).
Will not be included in the upcoming release. Very likely will make it into the spring release, though, and we will have a few months time to discover bugs and other odd things after the upgrade if we resolve this task soon after the upcoming release.
kislinsk moved T28491: [Segmentation] Slice interpolation 'confirm for all slices' sometimes crahes from Cycle to Segmentation on the MITK (v2021.10) board.
kislinsk renamed T28491: [Segmentation] Slice interpolation 'confirm for all slices' sometimes crahes from Slice interpolation 'confirm for all slices' not working for large images to Slice interpolation 'confirm for all slices' sometimes crahes.
kislinsk lowered the priority of T28732: [Segmentation] 3d region growing does not work with low seed point values from Unbreak Now! to High.
Oct 13 2021
Oct 13 2021
m907r triaged T28732: [Segmentation] 3d region growing does not work with low seed point values as Unbreak Now! priority.
kislinsk moved T28731: Update README.md of project template from Backlog to Cycle on the MITK (v2021.10) board.
floca closed T28728: [Registration] Translation vector changes when saving a project and loading it again as Wontfix.
You have to be careful when interpreting the rotation matrix, offset, translation and center. The following relationship applies:
kislinsk renamed T28728: [Registration] Translation vector changes when saving a project and loading it again from Translation vektor changes when saving a project and loading it again to [Registration] Translation vector changes when saving a project and loading it again.
Oct 12 2021
Oct 12 2021
The reason for the problem is that the server is configured to accept connections from only authorized users. ITFC added Ali Emre Kavur and Fabian Isensee as authorized users.
Oct 11 2021
Oct 11 2021
floca changed the visibility for T28724: nnUNet as a separate view in MITK.
• kleina moved T28725: VTP files cannot be opened from paths with "special" characters from Backlog to MITK Meeting on the Request for Discussion board.
• kleina triaged T28725: VTP files cannot be opened from paths with "special" characters as High priority.
Oct 8 2021
Oct 8 2021
floca added a comment to T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.
kislinsk closed T18761: Verify view navigator works after BlueBerry merge, a subtask of T18389: View navigator does not update application menu, as Resolved.
I close this meta task. The last open task seems to be T18866, but as the priority indicates it has low priority.
Oct 7 2021
Oct 7 2021
kalali added a comment to T18761: Verify view navigator works after BlueBerry merge.
@kislinsk How to proceed here?
kalali moved T18866: Highlighting in View Navigator is not updated from Backlog to Cycle on the MITK (v2021.10) board.
kalali edited projects for T18866: Highlighting in View Navigator is not updated, added: MITK (v2021.10); removed MITK.
Oct 6 2021
Oct 6 2021
• kleina updated subscribers of T28406: [Segmentation] Examine Live-wire tool for different costfunctions/behavior.
• kleina updated subscribers of T28464: [Segmentation] New Add/Remove tool.
kalali added a comment to T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.
Since we are now in the "final" release phase I suggest to use the corresponding checklists to check the new / modified behavior of D533 and simultaneously verify the checklists and test the UI behavior of both segmentation plugin views.
kalali added a revision to T26492: [mxn multi widget] Send active render window: Unknown Object (Differential Revision).
Oct 5 2021
Oct 5 2021
Oct 4 2021
Oct 4 2021
isensee added a comment to T28717: Polygon model cannot be created from large segmentations.
Edit: After a long time the 3d Model appeared but no Data Manager object was created for it:
Strange stuff (I deleted the segmentation tht's why the manager is empty)
kompan committed rMITK9b321258b872: Provide a link to the concentration curve converter view documentation. (authored by kompan).
Provide a link to the concentration curve converter view documentation.
kompan committed rMITKd336ce07ea7d: Provide a link to the concentration curve converter view documentation. (authored by kompan).
Provide a link to the concentration curve converter view documentation.
kalali moved T26486: PACS mouse mode does not allow scrolling with mouse wheel from MITK Meeting to Backlog on the Request for Discussion board.
kalali moved T25043: Remove pixel informations from the statusbar and put it into views from Backlog to MITK Meeting on the Request for Discussion board.
kalali moved T25105: UpdateStatusBar duplicates business logic from Backlog to MITK Meeting on the Request for Discussion board.
Do not set the interaction scheme
kalali committed rMITKfe71c9e533f4: Do not set the default event config for the interaction scheme (authored by kalali).
Do not set the default event config for the interaction scheme
kalali added a revision to T24358: Rework QmitkMouseModeSwitcher: Unknown Object (Differential Revision).
• m139l updated the task description for T28458: Airflow-App.
Oct 1 2021
Oct 1 2021
aekavur moved T28714: Deployment for test server from Backlog to In Progress on the webChallengeR board.
aekavur added a comment to T28699: [dash] Test server configuration.
After contacting Marco Pascale, it is decided to format the server to a new version of CentOS or Ubuntu. Still waiting response from IT side.
kislinsk added a comment to T28713: 2021 Week 39 (Very Early October).
Deleted branch from rMITK MITK: release/T28713-2021-Week-39.
Merge branch 'master' into develop
2021 Week 39 (Very Early October)
kislinsk edited the content of 2021 Week 39 (Very Early October).
kislinsk edited the content of 2021 Week 26 (Very Early July).
kislinsk added a comment to T28713: 2021 Week 39 (Very Early October).
Pushed new branch to rMITK MITK: release/T28713-2021-Week-39.
kislinsk created an object: 2021 Week 39 (Very Early October).
Sep 30 2021
Sep 30 2021
kalali added a revision to T26633: [mxn multi widget] Show different time points of data: Restricted Differential Revision.
A connected time navigation controller was missing and has been added for each "newly added render window".
The time navigation controller is a global instance, retrieved from the singleton rendering manager and thus the visible time slice of ALL currently opened render windows will be changed simultaneously / synchronized.
kislinsk added a comment to T28711: PixelValue 0 is not drawn in black background color or displayed transparently.
"Jet Transparent" only sets the lowest possible intensity to transparent. You can facilitate the new "Minimum" option in the Image Masking segmentation utility for that.
kahl added a comment to T28521: multilabel segmentation add switch to disable contour.
This function is also available in the preferences (Ctrl+P). There, just select "Draw as transparent overlay" (see image below).
Sep 29 2021
Sep 29 2021
eisenman added a comment to T28710: [Bug] Ggplot warning in various places of the report.
Successfully checked the proposed fix on a Windows system for downward compatibility (R 3.6.3, ggplot2 3.3.0).
aekavur renamed T28710: [Bug] Ggplot warning in various places of the report from [Bug] Ggplot warning in various placae of the report to [Bug] Ggplot warning in various places of the report.
aekavur committed rCHALLENGERd1dd576f4d05: "<scale>=FALSE usage is deprecated" warning fixed. (authored by aekavur).
"<scale>=FALSE usage is deprecated" warning fixed.
kalali added a comment to T26376: Segmentation plugin does not work correctly with the new mxn multi widget.
It seems as if "3d" in line
https://phabricator.mitk.org/source/mitk/browse/develop/Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp$704
can be replaced by any render window to determine the equality of the bounding boxes of the world geometry and the segmentation node geometry. This allows to use the active render window to check for equal geometry although this render window might not be a "3d" rendering window.
kalali triaged T28711: PixelValue 0 is not drawn in black background color or displayed transparently as Normal priority.
Sep 28 2021
Sep 28 2021
s434n added a revision to T24368: Interaction scheme has different level of interaction: Restricted Differential Revision.
patmjen added a comment to T28706: Cannot build module DataTypesExt becasue lz4 is not linked by CMake.
Seems like you were right. I was doing a Debug build, yes. Changing the lib name to lz4 instead of lz4d fixed the issue on my end too.
kislinsk closed T28706: Cannot build module DataTypesExt becasue lz4 is not linked by CMake as Resolved.
kislinsk added a comment to T28706: Cannot build module DataTypesExt becasue lz4 is not linked by CMake.
Deleted branch from rMITK MITK: bugfix/T28706-LZ4DebugUnix.
kislinsk committed rMITKd54bdbfc0dca: Use debug postfix for lz4 binaries in Unix (authored by kislinsk).
Use debug postfix for lz4 binaries in Unix
kislinsk committed rMITK50d3dad092c7: Merge branch 'bugfix/T28706-LZ4DebugUnix' into develop (authored by kislinsk).
Merge branch 'bugfix/T28706-LZ4DebugUnix' into develop
kislinsk added a comment to T28706: Cannot build module DataTypesExt becasue lz4 is not linked by CMake.
Pushed new branch to rMITK MITK: bugfix/T28706-LZ4DebugUnix.
aekavur moved T28710: [Bug] Ggplot warning in various places of the report from Backlog to In Progress on the challengeR board.
kislinsk added a comment to T28706: Cannot build module DataTypesExt becasue lz4 is not linked by CMake.
Thanks for giving it a try. I see that optimized;/work1/patmjen/MITK/MITK-superbuild-test/ep/lib64/liblz4.so is indeed added to the dependencies. So it is strange that it is not picked up by the linker. Or, did you do a Debug build? That would explain it at least since there is only a library specified for Release builds.