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Nov 17 2021

floca moved T27133: [Segmentation] Is QmitkDataSelectionWidget needed anymore? from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:04 PM · MITK (v2024.06)
floca moved T27149: [Segmentation] Interpolation nodes / position nodes are not correctly hidden from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:04 PM · MITK (v2024.06)
floca moved T28146: Rework how SegTool2D should add contour markers from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:02 PM · MITK (v2024.06)
floca moved T28244: [Segmentation] Fast Marching Tool not really responsive for large images from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:02 PM · MITK, Next Milestone
floca moved T28247: [Segmentation] Watershed tool freezes when slider and threshold are set to a low value from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:02 PM · MITK, Next Milestone, Missing Info, Request for Discussion
floca moved T18014: write tool interaction tests for segmentation from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:02 PM · MITK (v2024.06), Bugzilla
floca moved T25192: Enable DICOM SEG conversion for nrrd segmentations from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:01 PM · MITK (v2024.06), MICO (Demo MICCAI 2018)
floca moved T25445: MultiLabel segmentation mapper is very slow from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:01 PM · MITK (v2024.06), Request for Discussion
floca moved T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:01 PM · MITK (v2023.04)
floca moved T26950: Add rule class for DICOM Seg relations to source image from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:01 PM · MITK (v2024.06), Cleared
floca moved T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:01 PM · MITK (v2024.06)
floca moved T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG) from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:00 PM · MITK (v2024.06)
floca moved T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:00 PM · MITK (v2024.06), Cleared
floca moved T27060: [Segmentation] Rework InterpolationWidget to not depend on data manager view directly from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:00 PM · MITK (v2024.06)
floca moved T27637: [Segmentation] Multilabel label name dialog on label creation is a UX problem from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 12:00 PM · MITK (v2022.04), Cleared
floca moved T27684: [Segmentation] Improve Region Growing 2D algorithm and interaction from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2024.06)
floca moved T27807: [MultiLabel Segmentation] Inspection of module and plugin from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2024.06)
floca moved T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2022.10), Cleared
floca moved T28131: [MultiLabel Segmentation] 3D Threshold tool does not work with multiple labels / layers from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · Request for Discussion, MITK (v2022.04)
floca moved T28135: [MultiLabel Segmentation] Utilities view cannot handle non-binary multilabel segmentations from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2023.04)
floca moved T28139: [LabelSetImage] Ambigious meaning of "layer" in LabelSetImage from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2023.12), Request for Discussion
floca moved T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2024.06)
floca moved T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures. from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2022.10)
floca moved T28176: [Segmentation] Inspection of module and plugin from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2024.06)
floca moved T28181: [Segmentation] Should warning messages be passed on to the UI? from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:59 AM · MITK (v2024.06)
floca moved T28320: [Segmentation] Region growing does not work if seed point is already inside a segmentation from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:58 AM · MITK (v2022.04), Missing Info, Request for Discussion
floca moved T28548: Allow Zooming during creation of Segmentation. from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:58 AM · MITK (v2023.12), Request for Discussion
floca moved T28607: [Segmentation] LiveWire tool issues and improvements from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:58 AM · MITK (v2022.10), Cleared, Checklist
floca moved T28641: [Segmentation] Improve Watershed tool documentation from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:57 AM · MITK (v2022.04), Cleared
floca moved T28664: [Selection concept] Single node selection widget of ML view reacts if ML view is hidden from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:57 AM · MITK, Request for Discussion
floca moved T28675: Boolean Operations in Segmentation utilities are slow from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:57 AM · MITK (v2024.06), Request for Discussion
floca moved T28691: AutoSegmentationWithPreviewTool tool manager won't support multithreading from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:57 AM · MITK
floca moved T28736: Preferences for segmentation '2D display' are not properly utilized from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:57 AM · MITK (v2022.04)
floca moved T8140: Reimplement volume annotations for segmentations from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:57 AM · MITK (v2024.06), Request for Discussion, Bugzilla
floca moved T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2022.10), Cleared, Restricted Project
floca moved T28134: [Multilabel Segmentation] No warning triggered when using different mask geometries / dimensions in Utilities View from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2022.10), Cleared
floca moved T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2022.04), Breaking Change
floca moved T28264: [Segmentation Utilities] Various issues from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2024.06), Cleared
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2024.06)
floca moved T28464: [Segmentation] New Add/Remove tool from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2022.10)
floca moved T28479: [Segmentation] Rethink / reevaluate our existing segmentation tools / algorithms from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2024.06)
floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2024.06)
floca moved T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2024.06), Missing Info
floca moved T28561: Refactor/Fix mitk::SegmentationInteractor::ChangeActiveLabel from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2024.06)
floca moved T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · Next Milestone, MITK
floca moved T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · MITK (v2023.04), Restricted Project
floca moved T28524: Refactor LabelSetImage and associated classes. from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · Next Milestone
floca moved T28525: Design refactoring of LabelSetImage and associated classes from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:56 AM · Next Milestone
floca moved T28640: [Segmentation] Add tool checks for dynamic plugin view from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:55 AM · MITK (v2022.04)
floca moved T28752: [Segmentation] Move Segmentation utilities widgets to SegmentationUI module from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:55 AM · MITK (v2023.04)
floca moved T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:55 AM · MITK (v2022.10), Request for Discussion
floca moved T28801: [MultiLabel Segmentation][Utilities] Exception thrown when converting to MultiLabel from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:55 AM · MITK (v2022.10), Checklist
floca moved T28851: [SEG] Add ITK GrowCut as segmentation tool from Backlog to Segmentation on the MITK (v2022.04) board.
Nov 17 2021, 11:55 AM · MITK (v2022.10)
neher closed T28857: Create cmd app to calculate distances from fiber bundles to segmentations as Resolved.
Nov 17 2021, 11:19 AM · MITK Diffusion
neher added a comment to T28857: Create cmd app to calculate distances from fiber bundles to segmentations.

Pushed new branch T28857-FiberSegDistance.

Nov 17 2021, 11:18 AM · MITK Diffusion
neher triaged T28857: Create cmd app to calculate distances from fiber bundles to segmentations as High priority.
Nov 17 2021, 11:17 AM · MITK Diffusion
kislinsk added a comment to T27437: Migrate MITK to use ITK 5.x .

Deleted branch from rMITK MITK: feature/T27437-migrate-to-ITK-5.

Nov 17 2021, 9:53 AM · MITK-ProjectTemplate, MITK (v2022.04)
kislinsk added a comment to T27437: Migrate MITK to use ITK 5.x .

Deleted branch from rMITK MITK: feature/T27437-ITK-v5.1.

Nov 17 2021, 9:52 AM · MITK-ProjectTemplate, MITK (v2022.04)
kislinsk added a comment to T27437: Migrate MITK to use ITK 5.x .

Pushed new branch to rMITK MITK: feature/T27437-ITK-v5.

Nov 17 2021, 9:51 AM · MITK-ProjectTemplate, MITK (v2022.04)

Nov 16 2021

m907r committed rMITKb4b002750440: code revision of amir; changed the mechanism which enables/disables the… (authored by m907r).
code revision of amir; changed the mechanism which enables/disables the…
Nov 16 2021, 7:23 PM
m907r committed rMITK832d5eb05ead: [BUG FIX][Statistics] Difference in behavior between the two data selection… (authored by m907r).
[BUG FIX][Statistics] Difference in behavior between the two data selection…
Nov 16 2021, 7:23 PM
m907r closed T28515: [Statistics] Difference in behavior between the two data selection methods as Resolved by committing rMITK07814328c335: fixed T28515.
Nov 16 2021, 7:23 PM · MITK
m907r committed rMITK07814328c335: fixed T28515 (authored by m907r).
fixed T28515
Nov 16 2021, 7:22 PM
kahl committed rMITKde10d7d801c5: Apply correct zooming and panning when updating render window (authored by kahl).
Apply correct zooming and panning when updating render window
Nov 16 2021, 2:18 PM
kahl committed rMITK86a676bab050: Not set parameter for constraint zooming and panning in InitializeViews (authored by kahl).
Not set parameter for constraint zooming and panning in InitializeViews
Nov 16 2021, 2:18 PM
kahl committed rMITK0dd13925b2cb: Retrive base renderer only once (authored by kahl).
Retrive base renderer only once
Nov 16 2021, 2:18 PM
kahl closed T28778: "Use constraint zooming and panning" is only applied after reinit/restart as Resolved by committing rMITK5b54b904a6fe: Directly apply changes in preferences to "use constraint zooming and panning".
Nov 16 2021, 2:18 PM · MITK, Checklist
kahl committed rMITK5b54b904a6fe: Directly apply changes in preferences to "use constraint zooming and panning" (authored by kahl).
Directly apply changes in preferences to "use constraint zooming and panning"
Nov 16 2021, 2:18 PM
aekavur moved T28746: [dash] NaN values cause error from Backlog to In Progress on the challengeR board.
Nov 16 2021, 2:11 PM · challengeR, webChallengeR
aekavur added a project to T28746: [dash] NaN values cause error: challengeR.
Nov 16 2021, 2:11 PM · challengeR, webChallengeR
kislinsk added a hashtag to MITK (v2022.04): #mitk-2022-04.
Nov 16 2021, 9:21 AM
kislinsk triaged T28852: [DICOM] support temporal position and encoding for MR images as Wishlist priority.
Nov 16 2021, 9:17 AM · MITK (v2024.06)

Nov 15 2021

ahmadqasim triaged T28855: Add the tivita human dataset loaders to susidata repo as Normal priority.
Nov 15 2021, 6:49 PM · Restricted Project
kahl added a revision to T28778: "Use constraint zooming and panning" is only applied after reinit/restart: Unknown Object (Differential Revision).
Nov 15 2021, 9:23 AM · MITK, Checklist
kahl added a comment to T28778: "Use constraint zooming and panning" is only applied after reinit/restart.

Pushed new branch to rMITK MITK: bugfix/T28778-apply-constraint-zooming-panning.

Nov 15 2021, 9:15 AM · MITK, Checklist
kahl claimed T28778: "Use constraint zooming and panning" is only applied after reinit/restart.
Nov 15 2021, 9:04 AM · MITK, Checklist

Nov 12 2021

floca added a subtask for T28089: [CEST] Error loading custom data due to alleged spacing of 0: T28852: [DICOM] support temporal position and encoding for MR images.
Nov 12 2021, 6:22 PM · Auto-closed, Missing Info, Restricted Project, MITK
floca added a parent task for T28852: [DICOM] support temporal position and encoding for MR images: T28089: [CEST] Error loading custom data due to alleged spacing of 0.
Nov 12 2021, 6:22 PM · MITK (v2024.06)
floca created T28852: [DICOM] support temporal position and encoding for MR images.
Nov 12 2021, 6:22 PM · MITK (v2024.06)
floca added a subtask for T28851: [SEG] Add ITK GrowCut as segmentation tool: T27437: Migrate MITK to use ITK 5.x .
Nov 12 2021, 6:15 PM · MITK (v2022.10)
floca added a parent task for T27437: Migrate MITK to use ITK 5.x : T28851: [SEG] Add ITK GrowCut as segmentation tool.
Nov 12 2021, 6:15 PM · MITK-ProjectTemplate, MITK (v2022.04)
floca renamed T28851: [SEG] Add ITK GrowCut as segmentation tool from [Ssegmentation] to [Segmentation] Evaluate if we should add itkGrowCut as a tool.
Nov 12 2021, 6:15 PM · MITK (v2022.10)
floca triaged T28851: [SEG] Add ITK GrowCut as segmentation tool as High priority.
Nov 12 2021, 6:12 PM · MITK (v2022.10)
floca reopened T28089: [CEST] Error loading custom data due to alleged spacing of 0 as "Open".
Nov 12 2021, 6:11 PM · Auto-closed, Missing Info, Restricted Project, MITK
floca added a comment to T28089: [CEST] Error loading custom data due to alleged spacing of 0.

Identified the problem. The dicom data uses the temporal position (0020,0100) tag and associated tags to encode the "temporal"/spectral axis. This is a valid approach for MR images but yet not supported by our reader (currently only acquisition time and trigger time are interpreted). To make such kind of data properly readable we also have to support temporal positions.

Nov 12 2021, 6:11 PM · Auto-closed, Missing Info, Restricted Project, MITK
m907r added a revision to T28515: [Statistics] Difference in behavior between the two data selection methods: Unknown Object (Differential Revision).
Nov 12 2021, 5:00 PM · MITK
m907r added a revision to T28788: [Image Statistics] "Ignore zero-valued voxels" checkbox active when no data selected: Unknown Object (Differential Revision).
Nov 12 2021, 3:56 PM · Checklist, MITK
neher added a comment to T28849: Remove fiber parts only removes parts if point inside mask.

Maybe transform mask to polydata and use vtkIntersectionPolyDataFilter

Nov 12 2021, 1:01 PM · MITK Diffusion
neher triaged T28849: Remove fiber parts only removes parts if point inside mask as Normal priority.
Nov 12 2021, 1:00 PM · MITK Diffusion
aekavur moved T28746: [dash] NaN values cause error from Backlog to In Progress on the webChallengeR board.
Nov 12 2021, 10:22 AM · challengeR, webChallengeR
m907r claimed T28515: [Statistics] Difference in behavior between the two data selection methods.
Nov 12 2021, 9:15 AM · MITK

Nov 11 2021

m907r claimed T28788: [Image Statistics] "Ignore zero-valued voxels" checkbox active when no data selected.
Nov 11 2021, 4:28 PM · Checklist, MITK
kalali added a comment to T28788: [Image Statistics] "Ignore zero-valued voxels" checkbox active when no data selected.

@m907r Can you please "claim" this task if you are working on it so that other's don't start fixing it.

Nov 11 2021, 2:40 PM · Checklist, MITK
k656s added a member for trixi: hammb.
Nov 11 2021, 11:29 AM
k656s added a member for MIC: hammb.
Nov 11 2021, 11:29 AM
k656s added a member for Deep Learning: hammb.
Nov 11 2021, 11:29 AM
k656s added a member for Deep Learning: s539y.
Nov 11 2021, 11:23 AM
s669m moved T28845: Airflow sometimes fail during fresh installation on ubuntu 20.04 from Discussion to In Progress on the Kaapana (internal) board.
Nov 11 2021, 10:53 AM · Kaapana (internal)
s669m renamed T28847: [HACKING WEEK] - Upgrading Microk8s of Kaapana - from Upgrading Microk8s of Kaapana - HACKING WEEK to [HACKING WEEK] - Upgrading Microk8s of Kaapana - .
Nov 11 2021, 10:53 AM · Restricted Project, Kaapana (internal)
s669m claimed T28847: [HACKING WEEK] - Upgrading Microk8s of Kaapana - .
Nov 11 2021, 10:50 AM · Restricted Project, Kaapana (internal)