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Jan 20 2022

floca edited projects for T28525: Design refactoring of LabelSetImage and associated classes, added: Next Milestone, MITK; removed MITK (v2022.04).
Jan 20 2022, 9:35 AM · Next Milestone
floca edited projects for T28524: Refactor LabelSetImage and associated classes., added: MITK, Next Milestone; removed MITK (v2022.04).
Jan 20 2022, 9:35 AM · Next Milestone
s669m updated the task description for T28929: Any design recommendation for below problem ??.
Jan 20 2022, 9:34 AM · Request for Discussion, Kaapana (internal)
floca edited projects for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View, added: MITK, Next Milestone; removed MITK (v2022.04).
Jan 20 2022, 9:33 AM · MITK (v2023.04), Restricted Project
s669m renamed T28929: Any design recommendation for below problem ?? from Invoking an Ansible Script from pods fails/stuck on tasks where as invoking from Local(an instance) succeeds to Any design recommendation for below problem ??.
Jan 20 2022, 9:31 AM · Request for Discussion, Kaapana (internal)
s669m renamed T28929: Any design recommendation for below problem ?? from Ancible folder check task fails though the folder exists to Invoking an Ansible Script from pods fails/stuck on tasks where as invoking from Local(an instance) succeeds.
Jan 20 2022, 9:20 AM · Request for Discussion, Kaapana (internal)
kalali added a subtask for T28524: Refactor LabelSetImage and associated classes.: T28135: [MultiLabel Segmentation] Utilities view cannot handle non-binary multilabel segmentations.
Jan 20 2022, 8:55 AM · Next Milestone
kalali added a parent task for T28135: [MultiLabel Segmentation] Utilities view cannot handle non-binary multilabel segmentations: T28524: Refactor LabelSetImage and associated classes..
Jan 20 2022, 8:55 AM · MITK (v2023.04)

Jan 19 2022

floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T23981: Multilabel color map should disable interpolation.
Jan 19 2022, 5:45 PM · Next Milestone
floca added subtasks for T23981: Multilabel color map should disable interpolation: T28524: Refactor LabelSetImage and associated classes., T25445: MultiLabel segmentation mapper is very slow.
Jan 19 2022, 5:45 PM · Restricted Project, MITK
floca added a parent task for T25445: MultiLabel segmentation mapper is very slow: T23981: Multilabel color map should disable interpolation.
Jan 19 2022, 5:45 PM · MITK (v2024.06), Request for Discussion
floca added a subtask for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: T28524: Refactor LabelSetImage and associated classes..
Jan 19 2022, 5:44 PM · MITK (v2023.04), Restricted Project
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.
Jan 19 2022, 5:44 PM · Next Milestone
floca added a subtask for T25445: MultiLabel segmentation mapper is very slow: T28524: Refactor LabelSetImage and associated classes..
Jan 19 2022, 5:43 PM · MITK (v2024.06), Request for Discussion
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T25445: MultiLabel segmentation mapper is very slow.
Jan 19 2022, 5:43 PM · Next Milestone
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T26397: Multilabel Segmentation file cannot be converted to multilabel segmentation in MITK.
Jan 19 2022, 5:43 PM · Next Milestone
floca added a subtask for T26397: Multilabel Segmentation file cannot be converted to multilabel segmentation in MITK: T28524: Refactor LabelSetImage and associated classes..
Jan 19 2022, 5:43 PM · MITK
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T22458: Merging a label in the MultiLabel segmentation plugin leaves one label without a segmentation.
Jan 19 2022, 5:42 PM · Next Milestone
floca added a subtask for T22458: Merging a label in the MultiLabel segmentation plugin leaves one label without a segmentation: T28524: Refactor LabelSetImage and associated classes..
Jan 19 2022, 5:42 PM · MICO (Demo_MICCAI_2017), MITK
floca added a project to T25754: Cannot use tools in multilabel segmentation view without restart: Missing Info.

Is this still a valid issue?

Jan 19 2022, 5:41 PM · Missing Info, MITK
floca added a subtask for T22593: Update the MitkMultilabelTestDriver: T28524: Refactor LabelSetImage and associated classes..
Jan 19 2022, 5:40 PM · MITK
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T22593: Update the MitkMultilabelTestDriver.
Jan 19 2022, 5:40 PM · Next Milestone
kalali closed T28265: [Checklist] Overhaul ViewNavigator checklists to be in line with the latest changes to the checklists as Resolved.

Was adapted for the 2021.10 release with the following findings:

Jan 19 2022, 1:03 PM · MITK (v2022.04)
kalali closed T28265: [Checklist] Overhaul ViewNavigator checklists to be in line with the latest changes to the checklists, a subtask of T28108: [Release Checklists] Prepare release checklists, as Resolved.
Jan 19 2022, 1:03 PM · MITK
kalali added a comment to T28617: Inconsistent view initialization in rendering manager.

Simply removing this function does not work since it's the only function that allows to pass a specific single render window. And it will be used more often when using the mxn-multi widget.
However, it is not complicated to refactor these functions to remove this parameter and to simplify the functions to call each-other to allow passing a single render window.

Jan 19 2022, 12:04 PM · Breaking Change, MITK (v2022.04)
kalali removed a revision from T26496: [mxn multi widget] Re-initializations reset all render windows: Unknown Object (Differential Revision).
Jan 19 2022, 12:03 PM · MITK (v2022.10), Restricted Project

Jan 18 2022

kalali added a project to T28617: Inconsistent view initialization in rendering manager: Request for Discussion.
Jan 18 2022, 5:45 PM · Breaking Change, MITK (v2022.04)
kalali moved T28617: Inconsistent view initialization in rendering manager from Backlog to Cycle on the MITK (v2022.04) board.
Jan 18 2022, 5:44 PM · Breaking Change, MITK (v2022.04)
kalali moved T27613: Improve reinit behavior from Backlog to Cycle on the MITK (v2022.04) board.
Jan 18 2022, 5:44 PM · Request for Discussion, MITK (v2023.04)
kalali closed T27873: Extend "Checkliste Segmentierung – Interpolation", a subtask of T27506: Extend checklists for segmentation view, as Resolved.
Jan 18 2022, 5:35 PM · MITK (v2022.04), Cleared
kalali closed T27873: Extend "Checkliste Segmentierung – Interpolation" as Resolved.
Jan 18 2022, 5:35 PM · MITK (v2022.04), Cleared
kalali added a comment to T27873: Extend "Checkliste Segmentierung – Interpolation".

Was adapted for the 2021.10 release with the following findings:

Jan 18 2022, 5:35 PM · MITK (v2022.04), Cleared
kalali updated subscribers of T28132: Extend "Checkliste MultiLabel Segmentierung – Interpolation".
Jan 18 2022, 5:25 PM · MITK (v2022.04)
kalali closed T28132: Extend "Checkliste MultiLabel Segmentierung – Interpolation" as Resolved.

Should be taken care of with T27873: Extend "Checkliste Segmentierung – Interpolation" when T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation is done.

Jan 18 2022, 5:25 PM · MITK (v2022.04)
kalali closed T28132: Extend "Checkliste MultiLabel Segmentierung – Interpolation", a subtask of T28110: Extend checklists for multilabel segmentation view, as Resolved.
Jan 18 2022, 5:25 PM · MITK (v2022.04)
kalali updated subscribers of T27873: Extend "Checkliste Segmentierung – Interpolation".
Jan 18 2022, 5:23 PM · MITK (v2022.04), Cleared
kalali renamed T27873: Extend "Checkliste Segmentierung – Interpolation" from Extend "Checkliste Segmentierung – Manuelle Segmentierung mit Interpolation" to Extend "Checkliste Segmentierung – Interpolation".
Jan 18 2022, 5:23 PM · MITK (v2022.04), Cleared
kalali closed T27906: Extend "Checkliste Segmentierung – Utilities" as Resolved.

Was adapted for the 2021.10 release with the following findings:

Jan 18 2022, 4:35 PM · MITK (v2022.04), Cleared
kalali closed T27906: Extend "Checkliste Segmentierung – Utilities", a subtask of T27506: Extend checklists for segmentation view, as Resolved.
Jan 18 2022, 4:35 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27906: Extend "Checkliste Segmentierung – Utilities".
Jan 18 2022, 4:32 PM · MITK (v2022.04), Cleared
kalali closed T28133: Extend "Checkliste MultiLabel Segmentierung – Utilities" as Resolved.

Was adapted for the 2021.10 release with the following findings (more related tasks see comment before):

Jan 18 2022, 4:31 PM · MITK (v2022.04)
kalali closed T28133: Extend "Checkliste MultiLabel Segmentierung – Utilities", a subtask of T28110: Extend checklists for multilabel segmentation view, as Resolved.
Jan 18 2022, 4:31 PM · MITK (v2022.04)
kalali updated subscribers of T28797: [Segmentation[MultiLabel][Utilities] Using 4D data with dynamic segmentations results in 3D data.

@s349i Maybe you can say something about the expected output / generated segmentation. Also a reminder for the upcoming Segmentation-discussion.

Jan 18 2022, 4:25 PM · MITK (v2024.06), Checklist
kalali updated the task description for T28133: Extend "Checkliste MultiLabel Segmentierung – Utilities".
Jan 18 2022, 4:14 PM · MITK (v2022.04)
kalali closed T28136: Extend "Checkliste MultiLabel Segmentierung – Optionen", a subtask of T28110: Extend checklists for multilabel segmentation view, as Resolved.
Jan 18 2022, 2:27 PM · MITK (v2022.04)
kalali closed T28136: Extend "Checkliste MultiLabel Segmentierung – Optionen" as Resolved.

Was adapted for the 2021.10 release with the following findings:

Jan 18 2022, 2:27 PM · MITK (v2022.04)
kalali merged T28792: [Segmentation][Multilabel][Options] "Smoothed surface creation" is unclear or does not work. into T28766: [Segmentation] Preferences / properties for "Smoothed surface creation" do not seem to have any effect.
Jan 18 2022, 2:25 PM · MITK
kalali merged task T28792: [Segmentation][Multilabel][Options] "Smoothed surface creation" is unclear or does not work. into T28766: [Segmentation] Preferences / properties for "Smoothed surface creation" do not seem to have any effect.
Jan 18 2022, 2:25 PM · Checklist, MITK
kalali renamed T28792: [Segmentation][Multilabel][Options] "Smoothed surface creation" is unclear or does not work. from [Segmentation][Multilabel][Options] "Smothed surface creation" is unclear or does not work. to [Segmentation][Multilabel][Options] "Smoothed surface creation" is unclear or does not work..
Jan 18 2022, 2:24 PM · Checklist, MITK
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Jan 18 2022, 2:21 PM · MITK (v2022.04), Cleared
kalali updated the task description for T28136: Extend "Checkliste MultiLabel Segmentierung – Optionen".
Jan 18 2022, 2:21 PM · MITK (v2022.04)
kalali closed T27737: Extend "Checkliste Segmentierung – Optionen" as Resolved.

Was adapted for the 2021.10 release with the following findings:

Jan 18 2022, 2:19 PM · MITK (v2022.04), Cleared
kalali closed T27737: Extend "Checkliste Segmentierung – Optionen", a subtask of T27506: Extend checklists for segmentation view, as Resolved.
Jan 18 2022, 2:19 PM · MITK (v2022.04), Cleared
kalali closed T28790: [Segmentation][Multilabel] Changing of 2D display mode (transparent/outline) does not work es expected. as Resolved.

It's not a duplicate but the bug is known and probably related to T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary".

Jan 18 2022, 2:17 PM · Checklist, MITK
kalali raised the priority of T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" from Low to Needs Triage.

We are going to rewrite the 2-d LabelSetImage mapper and write a 3-d LabelSetImage mapper this year, where this will be addressed. We should at least clean up the duality of the contour properties (binary vs. labelset.contour). We should probably allow to show the contour without any filling and we should clean up the coupling between contours and active label.

Jan 18 2022, 2:13 PM · MITK (v2024.06), Checklist, Request for Discussion
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Jan 18 2022, 2:09 PM · MITK (v2022.04), Cleared
kalali merged T28820: [Segmentation] Auto-Selection Mode Not responsive into T28789: [Segmentation][Multilabel][Options] Auto-selection mode is unclear in checklist or broken.
Jan 18 2022, 2:08 PM · MITK (v2022.04), Checklist
kalali merged task T28820: [Segmentation] Auto-Selection Mode Not responsive into T28789: [Segmentation][Multilabel][Options] Auto-selection mode is unclear in checklist or broken.
Jan 18 2022, 2:08 PM · Checklist, MITK
kalali merged T28821: [Segmentation] Create (Smooth) Polygon Model hardly works for large images. into T28791: [Segmentation][Multilabel][Options]"Create polygon model" issues for large images.
Jan 18 2022, 2:02 PM · MITK (v2024.06), Checklist
kalali merged task T28821: [Segmentation] Create (Smooth) Polygon Model hardly works for large images. into T28791: [Segmentation][Multilabel][Options]"Create polygon model" issues for large images.
Jan 18 2022, 2:02 PM · Checklist, MITK

Jan 17 2022

kalali added a revision to T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe.: Unknown Object (Differential Revision).
Jan 17 2022, 6:31 PM · MITK (v2022.04)
kahl removed a project from T28748: [Segmentation] New Add tool: Behavior for modifying painted regions: Request for Discussion.
Jan 17 2022, 8:17 AM · MITK

Jan 15 2022

Unknown Object (User) added a comment to T27060: [Segmentation] Rework InterpolationWidget to not depend on data manager view directly.
Jan 15 2022, 6:10 AM · MITK (v2024.06)

Jan 13 2022

s669m moved T28929: Any design recommendation for below problem ?? from Community-Day Tasks to Discussion on the Kaapana (internal) board.
Jan 13 2022, 9:35 AM · Request for Discussion, Kaapana (internal)
s669m triaged T28929: Any design recommendation for below problem ?? as Normal priority.
Jan 13 2022, 9:35 AM · Request for Discussion, Kaapana (internal)

Jan 12 2022

s434n closed T27263: Measurements and pointsets display no valuable information as Resolved.
Jan 12 2022, 1:04 PM · MITK (v2022.04)
s434n committed rMITK9c07a3264cac: Update Measurement info on the fly (authored by s434n).
Update Measurement info on the fly
Jan 12 2022, 1:03 PM
s434n committed rMITK89a485f9dab2: introduce PointMovedPlanarFigureEvent for text updating (authored by s434n).
introduce PointMovedPlanarFigureEvent for text updating
Jan 12 2022, 1:03 PM
kislinsk removed a project from T27060: [Segmentation] Rework InterpolationWidget to not depend on data manager view directly: Request for Discussion.

The current solution was never meant as a user interface but only for saving slice positions in scene files. However, it turned out that it is quite handy to jump to drawn contours with a simple click so we should probably move the list of positions into the segmentation view itself if needed.

Jan 12 2022, 11:48 AM · MITK (v2024.06)
kislinsk edited projects for T28649: Deprecated classes in ImageExtraction-module are not used, added: MITK; removed MITK (v2022.04), Request for Discussion.
Jan 12 2022, 11:42 AM · MITK
kislinsk added a comment to T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe..

Suggestion: Open another task for ensuring at least default properties like "visible" that we can then kind of rely on.

Jan 12 2022, 11:40 AM · MITK (v2022.04)
kislinsk removed a project from T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe.: Request for Discussion.
Jan 12 2022, 11:35 AM · MITK (v2022.04)
kislinsk removed a project from T28262: TimeGeometry inconsistent documentation and implementation of time bounds and checks: Request for Discussion.

We can assume that this is a time-intensive task and a few solutions were already proposed but we do not see how to resolve it completely at the moment with our available resources.

Jan 12 2022, 11:25 AM · MITK (v2024.06)
kislinsk removed a project from T28725: VTP files cannot be opened from paths with "special" characters: Request for Discussion.
Jan 12 2022, 11:17 AM · MITK, Next Milestone
a178n committed rMITKb0257e6f8d96: Adding documentation for nnUNet tool (authored by a178n).
Adding documentation for nnUNet tool
Jan 12 2022, 5:19 AM
a178n committed rMITKca83403a126a: User Documentation of nnUNet tool (authored by a178n).
User Documentation of nnUNet tool
Jan 12 2022, 5:19 AM

Jan 11 2022

floca added a comment to T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe..

However, I agree that it should be enough to only care for the validation of the currently selected input nodes (working node / reference node).
I can propose a change and we can test if this is the desired behavior.

That would be nice. Thanks.

Jan 11 2022, 4:43 PM · MITK (v2022.04)
floca added a comment to T28752: [Segmentation] Move Segmentation utilities widgets to SegmentationUI module.

Good idea to talk about it in the group meeting.

Jan 11 2022, 4:36 PM · MITK (v2023.04)
kalali moved T27913: [Segmentation] Warnings in utilities view are inconsistent from Backlog to MITK Meeting on the Request for Discussion board.
Jan 11 2022, 1:18 PM · MITK (v2024.06)
kalali added a project to T27913: [Segmentation] Warnings in utilities view are inconsistent: Request for Discussion.
Jan 11 2022, 1:18 PM · MITK (v2024.06)
kalali updated subscribers of T27913: [Segmentation] Warnings in utilities view are inconsistent.

We should discuss if it makes sense to make these warnings consistent if we eventually merge both Utilities views into one (as mentioned by @s349i).

Jan 11 2022, 1:18 PM · MITK (v2024.06)
kalali added a comment to T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe..

Maybe I can clarify something:

Jan 11 2022, 1:01 PM · MITK (v2022.04)
kislinsk closed T28910: Enabling MBILog messages causes compile errors as Resolved.

Thank your for the report. I removed all erroneous MITK_DEBUG calls as they should be used rarely anyway.

Jan 11 2022, 12:40 PM · MITK
kislinsk added a comment to T28910: Enabling MBILog messages causes compile errors.

Deleted branch from rMITK MITK: bugfix/T28910-MITK_DEBUG-Errors.

Jan 11 2022, 12:39 PM · MITK
kislinsk committed rMITKbeef73a3a02e: Remove erroneous MITK_DEBUG lines (authored by kislinsk).
Remove erroneous MITK_DEBUG lines
Jan 11 2022, 12:39 PM
kislinsk committed rMITK6af4792c2c0b: Fix/reduce dependency to WebEngineCore (authored by kislinsk).
Fix/reduce dependency to WebEngineCore
Jan 11 2022, 12:39 PM
kislinsk committed rMITK4bec5aa5be6a: Remove fixed version of SimpleITK as recommendation (authored by kislinsk).
Remove fixed version of SimpleITK as recommendation
Jan 11 2022, 12:38 PM
kislinsk committed rMITK891067173875: Merge branch 'bugfix/T28910-MITK_DEBUG-Errors' into develop (authored by kislinsk).
Merge branch 'bugfix/T28910-MITK_DEBUG-Errors' into develop
Jan 11 2022, 12:38 PM
kislinsk added a comment to T28910: Enabling MBILog messages causes compile errors.

Pushed new branch to rMITK MITK: bugfix/T28910-MITK_DEBUG-Errors.

Jan 11 2022, 12:35 PM · MITK
s349i updated subscribers of T28752: [Segmentation] Move Segmentation utilities widgets to SegmentationUI module.

Since @floca suggested we merge Segmentation Utilities and MultilabelSegmentation Utilities only one of each Widget will probably remain. But also since we only want one of the SegmentationUtilities and MultilabelSegmentationUtilities probably the mitkMultiLabelImage class should be integrated now since I am still using the LabelSetImage as a makeshift. I have made some progress on BooleanOperations and MorphologicalOperations. Probably something to talk in the coming group meeting.

Jan 11 2022, 12:30 PM · MITK (v2023.04)
kalali moved T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation from Backlog to MITK Meeting on the Request for Discussion board.
Jan 11 2022, 12:19 PM · MITK (v2022.04), Breaking Change
kalali added a comment to T28176: [Segmentation] Inspection of module and plugin.

Testing if both Segmentation Utilities and Multilabel Segmentation Utilities have the same functionality:
...

Jan 11 2022, 12:03 PM · MITK (v2024.06)
kalali updated subscribers of T28752: [Segmentation] Move Segmentation utilities widgets to SegmentationUI module.

@s349i Are you aware of this task? What is your current status conc. the two Utilities Views?

Jan 11 2022, 12:00 PM · MITK (v2023.04)
kalali added a project to T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation: Request for Discussion.

The changes have already been merged. If there are no critical bugs found since the last release (where the changes of the related D533 were already included) we can continue with this task / subtasks.
I'd like to discuss our goals concerning this task for MITK v2022.04.

Jan 11 2022, 11:57 AM · MITK (v2022.04), Breaking Change
kislinsk triaged T28866: [Segmentation] Redundant label "recomputation" for Otsu/Watershed (& nnUNet) when any of the Preview-generated labels are selected to Confirm as Normal priority.
Jan 11 2022, 6:49 AM · MITK (v2022.10), Request for Discussion
kislinsk triaged T28886: MITK Flowbench - Reopen created segmentation not working as Normal priority.
Jan 11 2022, 6:48 AM · MITK (v2022.10), Missing Info, Kaapana (internal)
kislinsk added a subtask for T28886: MITK Flowbench - Reopen created segmentation not working: Restricted Maniphest Task.
Jan 11 2022, 6:48 AM · MITK (v2022.10), Missing Info, Kaapana (internal)
kislinsk added a parent task for T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe.: T28886: MITK Flowbench - Reopen created segmentation not working.
Jan 11 2022, 6:47 AM · MITK (v2022.04)
kislinsk added a subtask for T28886: MITK Flowbench - Reopen created segmentation not working: T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe..
Jan 11 2022, 6:47 AM · MITK (v2022.10), Missing Info, Kaapana (internal)
kislinsk claimed T28910: Enabling MBILog messages causes compile errors.
Jan 11 2022, 6:46 AM · MITK