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Sep 9 2022

kislinsk added a comment to T28607: [Segmentation] LiveWire tool issues and improvements.

Deleted branch from rMITK MITK: feature/T28607-live-wire-improvements.

Sep 9 2022, 10:16 AM · MITK (v2022.10), Cleared, Checklist
kislinsk added a comment to T28778: "Use constraint zooming and panning" is only applied after reinit/restart.

Deleted branch from rMITK MITK: bugfix/T28778-apply-constraint-zooming-panning.

Sep 9 2022, 10:16 AM · MITK, Checklist
kislinsk added a comment to T29208: Introduce sophisticated JSON library.

Deleted branch from rMITK MITK: feature/T29208-JSONForModernC++.

Sep 9 2022, 10:14 AM · MITK (v2022.10)
kislinsk added a comment to T28464: [Segmentation] New Add/Remove tool.

Deleted branch from rMITK MITK: feature/T28464-new-add-tool-2.

Sep 9 2022, 10:13 AM · MITK (v2022.10)
kislinsk added a comment to T29288: Change widget type of label name suggestions from combo box to line edit / list widget combination.

Deleted branch from rMITK MITK: feature/T29288-UseListWidgetForNewLabelDialog.

Sep 9 2022, 10:11 AM · MITK (v2022.10)
kislinsk committed rMITK37d1467c686b: Change widgets for new/rename label dialog (authored by kislinsk).
Change widgets for new/rename label dialog
Sep 9 2022, 10:11 AM
kislinsk closed T29288: Change widget type of label name suggestions from combo box to line edit / list widget combination as Resolved by committing rMITK20c1f2311423: Change widgets for new/rename label dialog.
Sep 9 2022, 10:10 AM · MITK (v2022.10)
kislinsk committed rMITK20c1f2311423: Change widgets for new/rename label dialog (authored by kislinsk).
Change widgets for new/rename label dialog
Sep 9 2022, 10:10 AM

Sep 8 2022

kalali added a comment to T29219: StatusBar / mouse scrolling is broken.
Sep 8 2022, 7:52 PM · MITK (v2022.10)
kalali updated the task description for T29290: SliceNavigationController and its Stepper fire too many events.
Sep 8 2022, 5:27 PM · MITK
kalali updated the task description for T29290: SliceNavigationController and its Stepper fire too many events.
Sep 8 2022, 5:27 PM · MITK
kalali added a parent task for T29290: SliceNavigationController and its Stepper fire too many events: T29269: Check geometries in SliceNavigationController and BaseRenderer.
Sep 8 2022, 5:21 PM · MITK
kalali added a subtask for T29269: Check geometries in SliceNavigationController and BaseRenderer: T29290: SliceNavigationController and its Stepper fire too many events.
Sep 8 2022, 5:21 PM · Next Milestone, MITK
kalali triaged T29290: SliceNavigationController and its Stepper fire too many events as Normal priority.
Sep 8 2022, 5:21 PM · MITK
kalali added a subtask for T29264: Overhaul of the SliceNavigationController and the BaseRenderer: T29289: Compare responsibilities of QmitkSliceNavigationController related classes.
Sep 8 2022, 5:18 PM · MITK
kalali added a parent task for T29289: Compare responsibilities of QmitkSliceNavigationController related classes: T29264: Overhaul of the SliceNavigationController and the BaseRenderer.
Sep 8 2022, 5:18 PM · MITK
kalali triaged T29289: Compare responsibilities of QmitkSliceNavigationController related classes as Normal priority.
Sep 8 2022, 5:18 PM · MITK
kislinsk added a revision to T29288: Change widget type of label name suggestions from combo box to line edit / list widget combination: Unknown Object (Differential Revision).
Sep 8 2022, 12:50 PM · MITK (v2022.10)
kislinsk added a comment to T29288: Change widget type of label name suggestions from combo box to line edit / list widget combination.

Pushed new branch to rMITK MITK: feature/T29288-UseListWidgetForNewLabelDialog.

Sep 8 2022, 12:48 PM · MITK (v2022.10)
kislinsk triaged T29288: Change widget type of label name suggestions from combo box to line edit / list widget combination as Wishlist priority.
Sep 8 2022, 12:38 PM · MITK (v2022.10)
kislinsk closed T29260: Automatically activate segmentation tool for segmentation task as Resolved.

If a tool is activated it will be activated automatically for the next task when the current task is accepted.

Sep 8 2022, 12:34 PM · MITK (v2022.10)
kislinsk closed T29260: Automatically activate segmentation tool for segmentation task, a subtask of T29157: NCT ISSO Annotation Support with MITK Segmentation Flow, as Resolved.
Sep 8 2022, 12:34 PM · MITK (v2023.04)
kislinsk closed T29259: Keyboard shortcuts for processing segmentation task lists, a subtask of T29157: NCT ISSO Annotation Support with MITK Segmentation Flow, as Resolved.
Sep 8 2022, 12:33 PM · MITK (v2023.04)
kislinsk closed T29259: Keyboard shortcuts for processing segmentation task lists as Resolved.
Sep 8 2022, 12:33 PM · MITK (v2022.10)
kislinsk added a comment to T29259: Keyboard shortcuts for processing segmentation task lists.

Deleted branch from rMITK MITK: feature/T29259-SegmentationTaskShortcuts.

Sep 8 2022, 12:33 PM · MITK (v2022.10)
kislinsk committed rMITK0dcf7170f21a: Add shortcuts for certain label actions (authored by kislinsk).
Add shortcuts for certain label actions
Sep 8 2022, 12:30 PM
kislinsk committed rMITKf67a0bbf4aa1: Add shortcuts for segmentation task management (authored by kislinsk).
Add shortcuts for segmentation task management
Sep 8 2022, 12:30 PM
kislinsk committed rMITK7aed72361013: Keep last tool active for next segmentation task (authored by kislinsk).
Keep last tool active for next segmentation task
Sep 8 2022, 12:30 PM
kislinsk committed rMITKcd41b1538fff: Refactor loop to use std::map::find() (authored by kislinsk).
Refactor loop to use std::map::find()
Sep 8 2022, 12:30 PM
kislinsk committed rMITKc9e88d4c27dd: Merge branch 'feature/T29259-SegmentationTaskShortcuts' into develop (authored by kislinsk).
Merge branch 'feature/T29259-SegmentationTaskShortcuts' into develop
Sep 8 2022, 12:30 PM
a178n updated the task description for T29275: Test new nnUNet(v2) python codebase with MITK.
Sep 8 2022, 11:07 AM · MITK (v2023.04)
floca committed rRTTB4bb4472b01aa: Changed the integration of DCMTK to CMake's component based build system (authored by floca).
Changed the integration of DCMTK to CMake's component based build system
Sep 8 2022, 10:43 AM
kislinsk added a revision to T29259: Keyboard shortcuts for processing segmentation task lists: Unknown Object (Differential Revision).
Sep 8 2022, 10:38 AM · MITK (v2022.10)
kislinsk added a revision to T29260: Automatically activate segmentation tool for segmentation task: Unknown Object (Differential Revision).
Sep 8 2022, 10:38 AM · MITK (v2022.10)
kislinsk added a comment to T29259: Keyboard shortcuts for processing segmentation task lists.

Pushed new branch to rMITK MITK: feature/T29259-SegmentationTaskShortcuts.

Sep 8 2022, 10:35 AM · MITK (v2022.10)
kalali added a comment to T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation.

@floca @s349i I removed the large T28524: Refactor LabelSetImage and associated classes. task as a subtask so this tree of subgraphs looks cleaner.
@s349i We can clean up / go through the subtasks once your changes are under review / are reviewed.

Sep 8 2022, 7:55 AM · MITK (v2022.10), Breaking Change
kalali removed a subtask for T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation: T28524: Refactor LabelSetImage and associated classes..
Sep 8 2022, 7:54 AM · MITK (v2022.10), Breaking Change
kalali removed a parent task for T28524: Refactor LabelSetImage and associated classes.: T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation.
Sep 8 2022, 7:54 AM · Next Milestone

Sep 7 2022

kalali closed T29268: Refactor BaseRenderer's update functions as Resolved.
Sep 7 2022, 8:09 PM · MITK
kalali closed T29268: Refactor BaseRenderer's update functions, a subtask of T29264: Overhaul of the SliceNavigationController and the BaseRenderer, as Resolved.
Sep 7 2022, 8:09 PM · MITK
kalali committed rMITK8fbb1850270f: Refactor BaseRenderer's update functions (authored by kalali).
Refactor BaseRenderer's update functions
Sep 7 2022, 8:09 PM
kalali committed rMITKfd132fc808a1: Clean base renderer (authored by kalali).
Clean base renderer
Sep 7 2022, 8:08 PM
kalali committed rMITK2b5f23efc554: Update comments / documentation (authored by kalali).
Update comments / documentation
Sep 7 2022, 8:08 PM
kalali committed rMITK8994aea00e37: Clean and simplify functions to update geometries (authored by kalali).
Clean and simplify functions to update geometries
Sep 7 2022, 8:08 PM
kalali closed T29267: Refactor SliceNavigationController's Update-function, a subtask of T29264: Overhaul of the SliceNavigationController and the BaseRenderer, as Resolved.
Sep 7 2022, 7:48 PM · MITK
kalali closed T29267: Refactor SliceNavigationController's Update-function as Resolved.
Sep 7 2022, 7:48 PM · MITK
kalali committed rMITK93bc0c914da3: Refactor SliceNavigationController's Update-function (authored by kalali).
Refactor SliceNavigationController's Update-function
Sep 7 2022, 7:48 PM
kalali committed rMITK573842afc450: Clean up due to local rebasing with latest develop (authored by kalali).
Clean up due to local rebasing with latest develop
Sep 7 2022, 7:48 PM
kalali committed rMITK1b76259fb266: Clean and simplify update-function (authored by kalali).
Clean and simplify update-function
Sep 7 2022, 7:48 PM
kalali closed T29200: Completely remove QmitkFunctionality, a subtask of T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor), as Resolved.
Sep 7 2022, 7:03 PM · MITK (v2022.10)
kalali closed T29200: Completely remove QmitkFunctionality as Resolved.
Sep 7 2022, 7:03 PM · MITK (v2022.10), Breaking Change
floca moved T29076: [Segmentation] Pressing DEL should delete a label from Tests/Checklists to Segmentation on the MITK (v2022.10) board.
Sep 7 2022, 5:21 PM · MITK (v2023.04), Checklist
floca moved T29090: [3D Segmentation] Threshold tool preview draws contours in green and not in the active label color. from Tests/Checklists to Segmentation on the MITK (v2022.10) board.
Sep 7 2022, 5:19 PM · MITK (v2023.04), Request for Discussion, Checklist
kalali edited projects for T29200: Completely remove QmitkFunctionality, added: MITK, Next Milestone; removed MITK (v2022.10).
Sep 7 2022, 5:17 PM · MITK (v2022.10), Breaking Change
floca added projects to T28816: [Segmentation] "New Segmentation" dialog to small: Restricted Project, Cleared.
Sep 7 2022, 5:17 PM · MITK (v2023.04), Cleared, Restricted Project, Checklist
floca moved T28800: [Segmentation] Threshold tool updates after each digit if typed in manually from Tests/Checklists to Segmentation on the MITK (v2022.10) board.
Sep 7 2022, 5:15 PM · MITK (v2023.04), Checklist, Request for Discussion
floca moved T28778: "Use constraint zooming and panning" is only applied after reinit/restart from Tests/Checklists to Backlog on the MITK (v2022.10) board.
Sep 7 2022, 5:15 PM · MITK, Checklist
floca moved T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range? from Tests/Checklists to Segmentation on the MITK (v2022.10) board.
Sep 7 2022, 5:14 PM · MITK (v2023.04), Checklist
floca added a project to T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range?: Missing Info.
Sep 7 2022, 5:14 PM · MITK (v2023.04), Checklist
floca moved T29078: [Segmentation] Erase tool has unclear edge cases from Tests/Checklists to Segmentation on the MITK (v2022.10) board.
Sep 7 2022, 5:13 PM · Next Milestone, Checklist
floca moved T29060: [Segmentation] Glitch in label color after 3d-interpolation from Tests/Checklists to Segmentation on the MITK (v2022.10) board.
Sep 7 2022, 5:13 PM · MITK (v2023.04), Checklist
floca moved T28801: [MultiLabel Segmentation][Utilities] Exception thrown when converting to MultiLabel from Tests/Checklists to Segmentation on the MITK (v2022.10) board.
Sep 7 2022, 5:12 PM · MITK (v2022.10), Checklist
floca moved T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly from Tests/Checklists to Segmentation on the MITK (v2022.10) board.
Sep 7 2022, 5:10 PM · MITK (v2023.04), Checklist
floca moved T28793: [Segmentation][Multilabel][Options] Changing only decimation rate has no visible effect in "Create smoothed polygon model" from Tests/Checklists to Segmentation on the MITK (v2022.10) board.
Sep 7 2022, 5:10 PM · Cleared, MITK (v2022.10), Checklist
floca raised the priority of T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable from Normal to High.

@s349i Please check which

  • of the problem are already solved by your changes
  • could be easily changed for that release
  • would be still open and should be done in the next release.
Sep 7 2022, 5:09 PM · MITK (v2023.04), Checklist
floca moved T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images from Backlog to MITK Meeting on the Request for Discussion board.
Sep 7 2022, 5:04 PM · Request for Discussion, MITK (v2022.10), Checklist
floca added a project to T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images: Request for Discussion.

Reason for the sluggish behavior could be rooted in mitk::ContourModelUtils::FillSliceInSlice(...). This is triggered with every mouse move and is currently a single threaded vtk code (handcrafted for loop) that iterates over the whole image. Much becomes very costly for large images. :(
May be at least multi thread the code?

Sep 7 2022, 5:04 PM · Request for Discussion, MITK (v2022.10), Checklist
floca moved T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images from Tests/Checklists to Segmentation on the MITK (v2022.10) board.
Sep 7 2022, 4:45 PM · Request for Discussion, MITK (v2022.10), Checklist
floca moved T29287: Rework segmentation checklist for new modes of the picking tool from Backlog to Tests/Checklists on the MITK (v2022.10) board.
Sep 7 2022, 4:44 PM · MITK (v2022.10)
floca triaged T29287: Rework segmentation checklist for new modes of the picking tool as High priority.
Sep 7 2022, 4:44 PM · MITK (v2022.10)
holzwart added a member for Photoacoustics: c738r.
Sep 7 2022, 4:43 PM
floca moved T29286: Rework segmentation checklist for new live wire and lasso tool from Backlog to Tests/Checklists on the MITK (v2022.10) board.
Sep 7 2022, 4:42 PM · MITK (v2022.10)
floca triaged T29286: Rework segmentation checklist for new live wire and lasso tool as High priority.
Sep 7 2022, 4:42 PM · MITK (v2022.10)
floca closed T28607: [Segmentation] LiveWire tool issues and improvements as Resolved.

Should be resolved with the changes introduced with the lasso tool reworks. Lets wait for tester feedback.

Sep 7 2022, 4:41 PM · MITK (v2022.10), Cleared, Checklist
floca moved T28791: [Segmentation][Multilabel][Options]"Create polygon model" issues for large images from Tests/Checklists to Segmentation on the MITK (v2022.10) board.
Sep 7 2022, 4:39 PM · MITK (v2023.04), Checklist
kalali closed T28669: [Segmentation] QmitkSlicesInterpolator and QmitkSliceBasedInterpolatorWidget seem to be redundant as Resolved.
Sep 7 2022, 4:07 PM · Breaking Change, MITK (v2022.10)
kalali committed rMITKe2c468412e5b: Remove redundant / unused QmitkSliceBasedInterpolatorWidget (authored by kalali).
Remove redundant / unused QmitkSliceBasedInterpolatorWidget
Sep 7 2022, 4:06 PM
kalali committed rMITK8739cc6b81c5: Remove unused class (authored by kalali).
Remove unused class
Sep 7 2022, 4:06 PM
kalali added a project to T28669: [Segmentation] QmitkSlicesInterpolator and QmitkSliceBasedInterpolatorWidget seem to be redundant: Breaking Change.
Sep 7 2022, 4:03 PM · Breaking Change, MITK (v2022.10)
kalali added a project to T29145: [Segmentation] Unused classes can be removed: Breaking Change.
Sep 7 2022, 4:02 PM · Breaking Change, MITK (v2022.10)
kalali closed T29145: [Segmentation] Unused classes can be removed as Resolved.
Sep 7 2022, 4:02 PM · Breaking Change, MITK (v2022.10)
kalali updated the task description for T29145: [Segmentation] Unused classes can be removed.
Sep 7 2022, 4:01 PM · Breaking Change, MITK (v2022.10)
kalali committed rMITKe8245705324e: Remove unused segmentation tool classes (authored by kalali).
Remove unused segmentation tool classes
Sep 7 2022, 3:56 PM
kalali committed rMITK7c3ad27567ea: Remove unused surface creation tool (authored by kalali).
Remove unused surface creation tool
Sep 7 2022, 3:56 PM
kalali committed rMITK863c0555b02e: Remove unused volumetry calculation tool (authored by kalali).
Remove unused volumetry calculation tool
Sep 7 2022, 3:56 PM
kalali committed rMITKa2a463ed6f6d: Remove unused gray value calculation tool (authored by kalali).
Remove unused gray value calculation tool
Sep 7 2022, 3:56 PM
kalali committed rMITK7f8f87ea8ad7: Remove unused pixel manipulation segmentation tool (authored by kalali).
Remove unused pixel manipulation segmentation tool
Sep 7 2022, 3:56 PM
kalali committed rMITK695cf076a8ab: Add datanode reset-geometry-action (authored by kalali).
Add datanode reset-geometry-action
Sep 7 2022, 3:47 PM
kalali committed rMITKe40c4174114f: Add a new action to reset the geometry of a base renderer (authored by kalali).
Add a new action to reset the geometry of a base renderer
Sep 7 2022, 3:47 PM
kislinsk triaged T29285: [Checklist] Revise Remeshing checklist as Normal priority.
Sep 7 2022, 11:54 AM · MITK (v2023.04), Checklist
kalali moved T28669: [Segmentation] QmitkSlicesInterpolator and QmitkSliceBasedInterpolatorWidget seem to be redundant from Backlog to Cycle on the MITK (v2022.10) board.
Sep 7 2022, 9:50 AM · Breaking Change, MITK (v2022.10)
kalali claimed T28669: [Segmentation] QmitkSlicesInterpolator and QmitkSliceBasedInterpolatorWidget seem to be redundant.
Sep 7 2022, 9:50 AM · Breaking Change, MITK (v2022.10)
kislinsk placed T29236: Check for prerequisites and give meaningful hints for missing packages up for grabs.
Sep 7 2022, 9:47 AM · MITK (v2023.04)
kislinsk moved T29259: Keyboard shortcuts for processing segmentation task lists from Backlog to Cycle on the MITK (v2022.10) board.
Sep 7 2022, 9:46 AM · MITK (v2022.10)
kislinsk raised the priority of T29259: Keyboard shortcuts for processing segmentation task lists from Wishlist to High.

@ahmadqasim asked me to raise priority for this task since it is the most important feature for them at the moment which is still missing.

Sep 7 2022, 9:46 AM · MITK (v2022.10)

Sep 6 2022

kalali added a revision to T26496: [mxn multi widget] Re-initializations reset all render windows: Restricted Differential Revision.
Sep 6 2022, 4:16 PM · MITK (v2022.10), Restricted Project
kalali added a comment to T26496: [mxn multi widget] Re-initializations reset all render windows.

During testing we realized that some more re-initializations are happening, where all render windows are updated. This is undesired in the case of the mxnMultiWidget so we will change this acordingly:

  • using the "Reset view"-action of the render window menu (top right corner of a render window) will use "Global reinit" and reinitialize all available render windows
    • can be changed by changing the behavior inside the QmitkMxNMultiWidget, where the corresponding signal is received and reacted on
  • creating a new QmitkRenderWindowWidget (which creates a new QmitkRenderWindow) currently initializes all render windows
    • can be changed by using the newly created QmitkRenderWindow (or rather its vtkRenderWindow) as argument to only update this new and initialize the new render window initially
Sep 6 2022, 4:15 PM · MITK (v2022.10), Restricted Project
j762e triaged T29284: Refactor segmentation plugin user manual documentation as Low priority.
Sep 6 2022, 3:08 PM · MITK (v2023.04)
kislinsk closed T29253: Update external projects, a subtask of T29241: Officially support Ubuntu 22.04 and dismiss Ubuntu 18.04, as Resolved.
Sep 6 2022, 11:03 AM · MITK (v2022.10)
kislinsk closed T29253: Update external projects as Resolved.
Sep 6 2022, 11:03 AM · MITK (v2022.10)