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Wed, Sep 14

floca added a comment to T28801: [MultiLabel Segmentation][Utilities] Exception thrown when converting to MultiLabel.

Should not be address directly now. Reason: With the new Segementation class, there will be a hard upper limit for the number of labels anyways. In this corner case we also would have to show a error message then, just telling that we cannot cover more then 2^16 labels. So that the provided image cannot be converted into a label image.

Wed, Sep 14, 11:25 AM · MITK (v2022.10), Checklist
floca added a comment to T26972: Dialog and plugin layout seems to be not shown correctly on laptops.

Could be the same issue like in T28816: [Segmentation] "New Segmentation" dialog to small

Wed, Sep 14, 11:13 AM · MITK, Next Milestone, Missing Info
kislinsk triaged T29300: Improve feedback for progress of long running tasks/operations as Wishlist priority.
Wed, Sep 14, 11:10 AM · Next Milestone, MITK
floca added a project to T29090: [3D Segmentation] Threshold tool preview draws contours in green and not in the active label color. : Next Milestone.
Wed, Sep 14, 11:10 AM · Next Milestone, MITK (v2022.10), Request for Discussion, Checklist
floca added a project to T28793: [Segmentation][Multilabel][Options] Changing only decimation rate has no visible effect in "Create smothed polygon model": Missing Info.

We have to check if the property is applied or the reason for no difference is that the rate is to small.

Wed, Sep 14, 10:53 AM · Missing Info, MITK (v2022.10), Checklist
s349i added a subtask for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: T29060: [Segmentation] Glitch in label color after 3d-interpolation.
Wed, Sep 14, 10:46 AM · MITK (v2022.10), Restricted Project
s349i added a parent task for T29060: [Segmentation] Glitch in label color after 3d-interpolation: T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.
Wed, Sep 14, 10:46 AM · MITK (v2022.10), Checklist
s349i claimed T29060: [Segmentation] Glitch in label color after 3d-interpolation.
Wed, Sep 14, 10:46 AM · MITK (v2022.10), Checklist
s349i added a subtask for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps.
Wed, Sep 14, 10:42 AM · MITK (v2022.10), Restricted Project
s349i added a parent task for T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps: T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.
Wed, Sep 14, 10:42 AM · MITK (v2022.10), Checklist
s349i claimed T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps.
Wed, Sep 14, 10:41 AM · MITK (v2022.10), Checklist
isensee added a comment to T29292: Unsupported pixel types.

Stefan is right that, from the medical perspective, there is no need for these pixel types. And urgently needed not they are. We can easily convert all the files with strange pixel types to files with 'normal' ones. The issue here is simply from a usability/user experience perspective. It is uncommon to me (and probably other as well) to load an image and then get told the pixel type is not supported

Wed, Sep 14, 10:26 AM · Request for Discussion, MITK
kalali closed T26496: [mxn multi widget] Re-initializations reset all render windows, a subtask of T28578: [mxn multi widget] Optimization of the mxn multi widget, as Resolved.
Wed, Sep 14, 9:05 AM · MITK
kalali closed T26496: [mxn multi widget] Re-initializations reset all render windows as Resolved.
Wed, Sep 14, 9:05 AM · MITK (v2022.10), Restricted Project
kalali committed rMITK46bc8f473d61: Initialize render windows individually (authored by kalali).
Initialize render windows individually
Wed, Sep 14, 9:03 AM
kalali committed rMITK6f11b3331cfb: Initialize the render window part correctly to null (authored by kalali).
Initialize the render window part correctly to null
Wed, Sep 14, 9:03 AM
kalali committed rMITK6d128ebb0011: Allow initializing a render window with bounding objects (authored by kalali).
Allow initializing a render window with bounding objects
Wed, Sep 14, 9:03 AM
kalali committed rMITKc44600cabb0f: Only initialize the newly created render window (authored by kalali).
Only initialize the newly created render window
Wed, Sep 14, 9:03 AM
kislinsk committed rMITK802ed4cd6b79: Made tool manager sensitive to the visibility of the reference image (authored by siddharth.tourani <tourani.siddharth@gmail.com>).
Made tool manager sensitive to the visibility of the reference image
Wed, Sep 14, 6:07 AM
kislinsk closed T28180: [Segmentation] Showing a previously hidden reference image requires a reinit as Resolved by committing rMITK720ebe4ad468: Made tool manager sensitive to the visibility of the reference image.
Wed, Sep 14, 6:07 AM · MITK (v2022.10)
kislinsk committed rMITK720ebe4ad468: Made tool manager sensitive to the visibility of the reference image (authored by siddharth.tourani <tourani.siddharth@gmail.com>).
Made tool manager sensitive to the visibility of the reference image
Wed, Sep 14, 6:07 AM
kislinsk closed T27578: 2021.1 Linux installer does not work on Fedora as Resolved.

I tested the fixed installer in a Fedora VM and it worked as expected.

Wed, Sep 14, 5:59 AM · MITK (v2022.10)
kislinsk added a comment to T27578: 2021.1 Linux installer does not work on Fedora.

Deleted branch from rMITK MITK: bugfix/T27578-RemoveTCPWrappersDependency.

Wed, Sep 14, 5:58 AM · MITK (v2022.10)
kislinsk committed rMITK20ed344cb5d6: Remove TCP Wrappers (libwrap) dependency (authored by kislinsk).
Remove TCP Wrappers (libwrap) dependency
Wed, Sep 14, 5:57 AM
kislinsk committed rMITKd4ce642978a6: Merge branch 'bugfix/T27578-RemoveTCPWrappersDependency' into develop (authored by kislinsk).
Merge branch 'bugfix/T27578-RemoveTCPWrappersDependency' into develop
Wed, Sep 14, 5:57 AM
kislinsk updated subscribers of T27320: No LocalStorage for PlaneGeometryDataVtkMapper3D.

@kalali Do you have a use case with the mxn widget where you could check this pull request with multiple 3d render windows?

Wed, Sep 14, 5:52 AM · MITK, Pull Request
kislinsk triaged T29220: StatusBar info is dependent on the pointer position, not on the crosshair / mouse click as Normal priority.
Wed, Sep 14, 5:42 AM · Request for Discussion, MITK
kislinsk triaged T29219: StatusBar / mouse scrolling is broken as Normal priority.
Wed, Sep 14, 5:41 AM · MITK (v2022.10)
kislinsk triaged T29229: SetDataNode on SinglePointDataInteractor clears data in node as Low priority.
NOTE: The SinglePointDataInteractor is not used anymore in our code base. It was once used for the AdaptiveRegionGrowingTool.
Wed, Sep 14, 5:40 AM · MITK

Tue, Sep 13

floca added a comment to T29292: Unsupported pixel types.

I wouldn't care for the extra size (if it stays reasonable), if users need the pixel type.

Tue, Sep 13, 9:16 PM · Request for Discussion, MITK
j762e added a comment to T28851: [SEG] Add ITK GrowCut as segmentation tool.

Deleted branch from rMITK MITK: feature/T28851-AddITKGrowCutTool.

Tue, Sep 13, 2:59 PM · MITK (v2022.10)
s434n added a subtask for T29297: [mxn multi widget] Optimize data accessibility inside render windows: T29299: [mxn multi widget] Allow drag 'n drop in render window specific data inspector.
Tue, Sep 13, 1:06 PM · MITK
s434n added a parent task for T29299: [mxn multi widget] Allow drag 'n drop in render window specific data inspector: T29297: [mxn multi widget] Optimize data accessibility inside render windows.
Tue, Sep 13, 1:06 PM · MITK
s434n triaged T29299: [mxn multi widget] Allow drag 'n drop in render window specific data inspector as Normal priority.
Tue, Sep 13, 1:06 PM · MITK
s434n added a subtask for T29297: [mxn multi widget] Optimize data accessibility inside render windows: T29298: [mxn multi widget] Add context menu to render window specific data inspector.
Tue, Sep 13, 1:03 PM · MITK
s434n added a parent task for T29298: [mxn multi widget] Add context menu to render window specific data inspector: T29297: [mxn multi widget] Optimize data accessibility inside render windows.
Tue, Sep 13, 1:03 PM · MITK
s434n triaged T29298: [mxn multi widget] Add context menu to render window specific data inspector as Normal priority.
Tue, Sep 13, 1:02 PM · MITK
kislinsk closed T29296: Crash when clearing the segmentation task list selection as Resolved.
Tue, Sep 13, 12:48 PM · MITK (v2022.10)
kislinsk added a comment to T29296: Crash when clearing the segmentation task list selection.

Deleted branch from rMITK MITK: bugfix/T29296-FixCrashWhenClearingTaskListSelection.

Tue, Sep 13, 12:48 PM · MITK (v2022.10)
kislinsk committed rMITK99fad818c03f: Remove debug output (authored by kislinsk).
Remove debug output
Tue, Sep 13, 12:48 PM
kislinsk committed rMITKc7562ac0dca1: Check validity of task list before updating navigation buttons (authored by kislinsk).
Check validity of task list before updating navigation buttons
Tue, Sep 13, 12:48 PM
kislinsk committed rMITKe91794e34de4: Merge branch 'bugfix/T29296-FixCrashWhenClearingTaskListSelection' into develop (authored by kislinsk).
Merge branch 'bugfix/T29296-FixCrashWhenClearingTaskListSelection' into develop
Tue, Sep 13, 12:48 PM
kislinsk added a comment to T29296: Crash when clearing the segmentation task list selection.

Pushed new branch to rMITK MITK: bugfix/T29296-FixCrashWhenClearingTaskListSelection.

Tue, Sep 13, 12:47 PM · MITK (v2022.10)
s434n added a subtask for T28578: [mxn multi widget] Optimization of the mxn multi widget: T29297: [mxn multi widget] Optimize data accessibility inside render windows.
Tue, Sep 13, 12:46 PM · MITK
s434n added a parent task for T29297: [mxn multi widget] Optimize data accessibility inside render windows: T28578: [mxn multi widget] Optimization of the mxn multi widget.
Tue, Sep 13, 12:46 PM · MITK
s434n triaged T29297: [mxn multi widget] Optimize data accessibility inside render windows as Normal priority.
Tue, Sep 13, 12:46 PM · MITK
kislinsk triaged T29296: Crash when clearing the segmentation task list selection as High priority.
Tue, Sep 13, 12:44 PM · MITK (v2022.10)
a178n added a comment to T29295: MONAI Label App as auto-segmentation tool in MITK.

Pushed new branch to rMITK MITK: feature/T29295-monai-segmentation-tool.

Tue, Sep 13, 11:14 AM · MITK, Next Milestone
a178n added a project to T29295: MONAI Label App as auto-segmentation tool in MITK: MITK.
Tue, Sep 13, 11:14 AM · MITK, Next Milestone
a178n triaged T29295: MONAI Label App as auto-segmentation tool in MITK as Normal priority.
Tue, Sep 13, 10:53 AM · MITK, Next Milestone
a178n placed T29275: Test new nnUNet(v2) python codebase with MITK up for grabs.
Tue, Sep 13, 10:01 AM · MITK, Next Milestone
a178n placed T29294: Extend &/or Test nnUnet(v2) on Windows up for grabs.
Tue, Sep 13, 10:01 AM · Request for Discussion, MITK, Next Milestone
a178n triaged T29294: Extend &/or Test nnUnet(v2) on Windows as Normal priority.
Tue, Sep 13, 10:00 AM · Request for Discussion, MITK, Next Milestone
kislinsk removed a project from T27578: 2021.1 Linux installer does not work on Fedora: Next Milestone.
Tue, Sep 13, 9:35 AM · MITK (v2022.10)
u851l committed rKAAPANA256be26e8466: kube-helm: add extension_params changes to utils.py (authored by u851l).
kube-helm: add extension_params changes to utils.py
Tue, Sep 13, 8:29 AM
u851l committed rKAAPANA9e0a727a8e59: kube-helm: add logger (authored by u851l).
kube-helm: add logger
Tue, Sep 13, 8:09 AM

Mon, Sep 12

k688h committed rKAAPANAaa076598fa13: Replace YAML config with JSON for request and platform parametrisation (authored by k688h).
Replace YAML config with JSON for request and platform parametrisation
Mon, Sep 12, 9:37 PM
k688h committed rKAAPANA96526c88f6ac: Extend platform params, remove some defaults, extend missing param error… (authored by k688h).
Extend platform params, remove some defaults, extend missing param error…
Mon, Sep 12, 9:37 PM
isensee added a comment to T29292: Unsupported pixel types.

I sent the file to you via slack.
Not supporting some pixel types can be very frustrating for users, so it might make sense to extend this list (I would certainly appreciate it and a 200MB standalone is really not large by 2022 standards so there is some headroom imo ;-) ). This is not the first time I ran into this issue :-/

Mon, Sep 12, 12:19 PM · Request for Discussion, MITK
kislinsk created ARGOS UI.
Mon, Sep 12, 12:15 PM
kislinsk added a revision to T27578: 2021.1 Linux installer does not work on Fedora: Unknown Object (Differential Revision).
Mon, Sep 12, 12:12 PM · MITK (v2022.10)
kislinsk added a comment to T27578: 2021.1 Linux installer does not work on Fedora.

Pushed new branch to rMITK MITK: bugfix/T27578-RemoveTCPWrappersDependency.

Mon, Sep 12, 12:10 PM · MITK (v2022.10)
kislinsk added a comment to T27578: 2021.1 Linux installer does not work on Fedora.

Looking closer into the issue I wonder why it should not work without TCP Wrappers. It is an optional dependency of DCMTK which, regarding to storescp, adds two access control cmd-line arguments that we are not using anyway as far as I can see. So maybe it is just an issue since we so an explicit requirement check and then of course DO link against it. If we would explicitly disable it in DCMTK and remove the check in our CMake script, it should probably work already,

Mon, Sep 12, 11:55 AM · MITK (v2022.10)
l597s committed rKAAPANA8bc251f731e3: Merge branch 'hotfix/server-installation-script' into develop (authored by l597s).
Merge branch 'hotfix/server-installation-script' into develop
Mon, Sep 12, 9:45 AM
kislinsk lowered the priority of T27578: 2021.1 Linux installer does not work on Fedora from High to Normal.
Mon, Sep 12, 8:30 AM · MITK (v2022.10)
kislinsk added a comment to T27578: 2021.1 Linux installer does not work on Fedora.

I would recommend to file a ticket in the DCMTK bug tracker since it is a dependency of dcmnet.

Mon, Sep 12, 8:30 AM · MITK (v2022.10)
kislinsk moved T29285: [Checklist] Revise Remeshing checklist from Backlog to Tests/Checklists on the MITK (v2022.10) board.
Mon, Sep 12, 8:17 AM · Checklist, MITK (v2022.10)
kislinsk closed T29293: Fix typos in Core module documentation as Resolved.
Mon, Sep 12, 8:01 AM · Pull Request, MITK (v2022.10)
kislinsk added a comment to T29293: Fix typos in Core module documentation.

Deleted branch from rMITK MITK: bugfix/T29293-FixTypos.

Mon, Sep 12, 8:01 AM · Pull Request, MITK (v2022.10)
GitHub <noreply@github.com> committed rMITK9ff0e8ac23bb: Merge branch 'develop' into typos/modules-core (authored by kislinsk).
Merge branch 'develop' into typos/modules-core
Mon, Sep 12, 7:57 AM
luz paz <luzpaz@pm.me> committed rMITK6595b77015a5: Fix typos in Modules/Core/include (authored by luz paz <luzpaz@pm.me>).
Fix typos in Modules/Core/include
Mon, Sep 12, 7:57 AM
luz paz <luzpaz@github.com> committed rMITKf5e17d7bca87: Fix 'duplicate HTML element attributes' reported by LGTM (authored by luz paz <luzpaz@pm.me>).
Fix 'duplicate HTML element attributes' reported by LGTM
Mon, Sep 12, 7:57 AM
luz paz <luzpaz@pm.me> committed rMITKe6244b486c93: Fix typos in Modules/Core (authored by luz paz <luzpaz@pm.me>).
Fix typos in Modules/Core
Mon, Sep 12, 7:57 AM
luz paz <luzpaz@pm.me> committed rMITK0d5ff6416bb8: Fix typos in Modules/Core/src (authored by luz paz <luzpaz@pm.me>).
Fix typos in Modules/Core/src
Mon, Sep 12, 7:57 AM
kislinsk committed rMITKd2d4b0885eeb: Merge remote-tracking branch 'luzpaz/bugfix/lgtm-duplicate-html-class' into… (authored by kislinsk).
Merge remote-tracking branch 'luzpaz/bugfix/lgtm-duplicate-html-class' into…
Mon, Sep 12, 7:57 AM
luz paz <luzpaz@pm.me> committed rMITK3d0822a8ce88: Fix typos in Modules/Core/doc (authored by luz paz <luzpaz@pm.me>).
Fix typos in Modules/Core/doc
Mon, Sep 12, 7:57 AM
kislinsk committed rMITKc31c2f02247e: Merge remote-tracking branch 'luzpaz/typos/modules-core' into bugfix/T29293… (authored by kislinsk).
Merge remote-tracking branch 'luzpaz/typos/modules-core' into bugfix/T29293…
Mon, Sep 12, 7:57 AM
kislinsk committed rMITKdfba04a168c2: Merge branch 'bugfix/T29293-FixTypos' into develop (authored by kislinsk).
Merge branch 'bugfix/T29293-FixTypos' into develop
Mon, Sep 12, 7:57 AM
kislinsk added a comment to T29293: Fix typos in Core module documentation.

Pushed new branch to rMITK MITK: bugfix/T29293-FixTypos.

Mon, Sep 12, 7:56 AM · Pull Request, MITK (v2022.10)
kislinsk triaged T29293: Fix typos in Core module documentation as Low priority.
Mon, Sep 12, 7:51 AM · Pull Request, MITK (v2022.10)
kislinsk closed T26841: Documentation typo as Resolved.
Mon, Sep 12, 7:50 AM

Sat, Sep 10

kislinsk moved T29292: Unsupported pixel types from Backlog to MITK Meeting on the Request for Discussion board.
Sat, Sep 10, 5:07 PM · Request for Discussion, MITK
kislinsk triaged T29292: Unsupported pixel types as Normal priority.

We cannot see the files. Their view policy is too restricted.

Sat, Sep 10, 5:07 PM · Request for Discussion, MITK

Fri, Sep 9

kislinsk edited the content of 2022 Week 36 (Early September).
Fri, Sep 9, 3:11 PM
isensee updated the task description for T29292: Unsupported pixel types.
Fri, Sep 9, 2:57 PM · Request for Discussion, MITK
isensee created T29292: Unsupported pixel types.
Fri, Sep 9, 2:57 PM · Request for Discussion, MITK
l597s committed rKAAPANAb709ca9e64ed: Use SUDO_USER and l597s to determine REAL_USER. (authored by l597s).
Use SUDO_USER and l597s to determine REAL_USER.
Fri, Sep 9, 2:46 PM
kislinsk closed T29291: 2022 Week 36 (Early September) as Resolved.
Fri, Sep 9, 12:59 PM · MITK
kislinsk edited the content of Changelog.
Fri, Sep 9, 12:58 PM · MITK
kislinsk edited the content of 2022 Week 28 (Mid July).
Fri, Sep 9, 12:58 PM
kislinsk added a comment to T29291: 2022 Week 36 (Early September).

Deleted branch from rMITK MITK: release/T29291-2022-Week-36.

Fri, Sep 9, 12:57 PM · MITK
kislinsk committed rMITKd5fbcf0ecedd: Merge branch 'master' into develop (authored by kislinsk).
Merge branch 'master' into develop
Fri, Sep 9, 12:57 PM
kislinsk committed rMITK36fc4a09ab87: 2022 Week 36 (Early September) (authored by kislinsk).
2022 Week 36 (Early September)
Fri, Sep 9, 12:56 PM
kislinsk edited the content of 2022 Week 36 (Early September).
Fri, Sep 9, 12:50 PM
u851l committed rKAAPANA80848c70b5f0: base platform install sh: change helm namespace (authored by u851l).
base platform install sh: change helm namespace
Fri, Sep 9, 12:33 PM
kislinsk added a comment to T29291: 2022 Week 36 (Early September).

Pushed new branch to rMITK MITK: release/T29291-2022-Week-36.

Fri, Sep 9, 10:31 AM · MITK
kislinsk triaged T29291: 2022 Week 36 (Early September) as Normal priority.
Fri, Sep 9, 10:29 AM · MITK
kislinsk created an object: 2022 Week 36 (Early September).
Fri, Sep 9, 10:27 AM
kislinsk added a comment to T28959: [Segmentation] LiveWire Closing Contour improvements.

Deleted branch from rMITK MITK: feature/T28959-livewire-closure-improvements.

Fri, Sep 9, 10:16 AM · MITK
kislinsk added a comment to T28464: [Segmentation] New Add/Remove tool.

Deleted branch from rMITK MITK: feature/T28464-new-add-tool.

Fri, Sep 9, 10:16 AM · MITK (v2022.10)