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Dec 9 2022

k688h moved T28570: Compatibility Test with Kaapana Microk8s and Containerd Tech stack from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Dec 9 2022, 12:06 PM · Restricted Project

Dec 8 2022

neher committed rMITKDIFF2a04e0a17393: make flip x default for trk files (authored by neher).
make flip x default for trk files
Dec 8 2022, 4:40 PM
neher triaged T29430: Flip x direction for trk files as Normal priority.
Dec 8 2022, 1:26 PM · MITK Diffusion

Dec 7 2022

kalali added a revision to T29027: Move NodeSelectionWidgets to QtWidgets module: Unknown Object (Differential Revision).
Dec 7 2022, 3:30 PM · MITK (v2023.04)
franza updated the task description for T29429: org.mitk.gui.qt.igt.app.ultrasoundtrackingnavigation: Crash during initialization of combined modality.
Dec 7 2022, 2:54 PM · IGT, MITK
franza triaged T29429: org.mitk.gui.qt.igt.app.ultrasoundtrackingnavigation: Crash during initialization of combined modality as High priority.
Dec 7 2022, 2:53 PM · IGT, MITK
kislinsk added a comment to T29428: Creating scene file with image properties can result in missing LevelWindowbar.

Reading your other task regarding mitkscene files I wonder if it has something to to with attaching the level window property to the BaseData property list instead of the DataNode property list. In principle, the level window should be attached to the latter one as it is an "appearance" property and not something instrinsic to the data. A few years ago we changed the way properties are queried and when a property is not present in a DataNode property list, the Base Data property list is queried as fallback. Maybe it is not fully functional for level windows as it could be that the code somehow relies on / assumes that the properties are located in the DataNode property list.

Dec 7 2022, 10:00 AM · MITK
kislinsk added a comment to T29427: FlowBench mitkscene structure has changed..

Not sure if I fully understand what is going on here but the difference is that in your first example you have DataNode properties and in your second example you have BaseData properties, right? Let's talk about it in our group 5 meeting today. :)

Dec 7 2022, 9:56 AM · MITK

Dec 6 2022

gaoh triaged T29428: Creating scene file with image properties can result in missing LevelWindowbar as Normal priority.
Dec 6 2022, 4:42 PM · MITK
gaoh created T29428: Creating scene file with image properties can result in missing LevelWindowbar.
Dec 6 2022, 4:42 PM · MITK
gaoh triaged T29427: FlowBench mitkscene structure has changed. as Normal priority.
Dec 6 2022, 2:58 PM · MITK

Dec 1 2022

kislinsk updated subscribers of T29421: Finding CppRestSDK library alternative.

@a178n I added cpp-httplib as dependency to MITK in the branch mentioned above so you can easily experiment with it. For details, see rMITKf88e3d05aeb0: Add cpp-httplib as optional dependency.

Dec 1 2022, 1:51 PM · MITK
kislinsk added a comment to T29421: Finding CppRestSDK library alternative.

Pushed new branch to rMITK MITK: feature/T29421-httplib.

Dec 1 2022, 1:49 PM · MITK

Nov 30 2022

a178n updated subscribers of T29421: Finding CppRestSDK library alternative.
Nov 30 2022, 8:49 PM · MITK
a178n added a comment to T29421: Finding CppRestSDK library alternative.

After a meeting with Ralf and Stefan (30.11.2022), the header-only library cpp-httplib (GitHub: https://github.com/yhirose/cpp-httplib), was chosen as a promising alternative. The library seems the most popular in the GitHub community compared to Pistache, the second favourite library from the list.
Hands-on efforts to build server and client calls will be undertaken to test further suitability.

Nov 30 2022, 8:49 PM · MITK
a178n added a comment to T29421: Finding CppRestSDK library alternative.

The literature survey searching for alternatives is summarized here: https://hub.dkfz.de/s/qsEgaWybwiWcfYN

Nov 30 2022, 8:29 PM · MITK
a178n triaged T29421: Finding CppRestSDK library alternative as Normal priority.
Nov 30 2022, 5:39 PM · MITK
kalali awarded MITK v2022.10 a Yellow Medal token.
Nov 30 2022, 4:20 PM
kalali moved T29420: [Segmentation] SegWithPreviewTool does not work with vector / multi channel images from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 3:35 PM · MITK (v2024.06)
kalali triaged T29420: [Segmentation] SegWithPreviewTool does not work with vector / multi channel images as Normal priority.
Nov 30 2022, 3:35 PM · MITK (v2024.06)
kalali renamed T29396: [Segmentation] Newly created labelset image has wrong image type from Growcut error to [Segmentation] Newly created labelset image has wrong image type.
Nov 30 2022, 3:30 PM · MITK (v2024.06)
kalali added a subtask for T29369: [Segmentation Utilities] Handle / select different labels independently: T29206: [SEG] Implement a Qt model for LabelSets for MVC patterns.
Nov 30 2022, 2:11 PM · MITK (v2024.06)
kalali added a parent task for T29206: [SEG] Implement a Qt model for LabelSets for MVC patterns: T29369: [Segmentation Utilities] Handle / select different labels independently.
Nov 30 2022, 2:11 PM · MITK (v2023.04), Checklist
kalali added a comment to T29369: [Segmentation Utilities] Handle / select different labels independently.

Should be tackled as soon as T29206: [SEG] Implement a Qt model for LabelSets for MVC patterns is done.

Nov 30 2022, 2:10 PM · MITK (v2024.06)
kalali removed a subtask for T27613: Improve reinit behavior: Unknown Object (Maniphest Task).
Nov 30 2022, 2:08 PM · Request for Discussion, MITK (v2023.04)
kalali removed a subtask for T27613: Improve reinit behavior: T29094: Deleting a data node causes global reset.
Nov 30 2022, 2:08 PM · Request for Discussion, MITK (v2023.04)
kalali removed a parent task for T29094: Deleting a data node causes global reset: T27613: Improve reinit behavior.
Nov 30 2022, 2:08 PM · MITK, Checklist
kalali closed T27613: Improve reinit behavior as Resolved.

Adding a data node reset-geometry-action was a first step and enough to tackle this issue. If there are more requirements for some "intelligence", new tasks need to be opened.

Nov 30 2022, 2:07 PM · Request for Discussion, MITK (v2023.04)
kalali closed T29385: [mxn multi widget] Pixel value view does not change on crosshair selection as Resolved.

Render window specific visibility has to be covered, as mentioned in D756#26848. This will be done in T29403: [mxn multi widget] Concept for crosshair data type.

Nov 30 2022, 2:04 PM · MITK (v2023.04)
kalali updated the task description for T29403: [mxn multi widget] Concept for crosshair data type.
Nov 30 2022, 2:04 PM · MITK (v2023.04)
kalali closed T26394: [Render window manager] Provide tree view / model, a subtask of T28578: [mxn multi widget] Optimization of the mxn multi widget, as Wontfix.
Nov 30 2022, 2:02 PM · MITK
kalali closed T26394: [Render window manager] Provide tree view / model as Wontfix.

This task is invalid; related work will be continued in T29297: [mxn multi widget] Optimize data accessibility inside render windows.

Nov 30 2022, 2:02 PM · MITK (v2023.04), Restricted Project
kalali moved T29297: [mxn multi widget] Optimize data accessibility inside render windows from Backlog to mxn MultiWidget on the MITK (v2023.04) board.
Nov 30 2022, 2:01 PM · MITK (v2023.04)
kalali edited projects for T29297: [mxn multi widget] Optimize data accessibility inside render windows, added: MITK (v2023.04); removed MITK.
Nov 30 2022, 2:01 PM · MITK (v2023.04)
kislinsk moved T29337: Global Reinit HotKey functionality not there in Mac OSX from Others to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2024.06), Cleared, Checklist
kislinsk moved T28262: TimeGeometry inconsistent documentation and implementation of time bounds and checks from Others to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2024.06)
kislinsk moved T27189: REST API for data storage from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2024.06), Restricted Project, Request for Discussion
kislinsk moved T27718: Miniapp for basic DICOM testing from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2023.12), Kaapana (internal)
kislinsk moved T29027: Move NodeSelectionWidgets to QtWidgets module from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2023.04)
kislinsk moved T29140: [Selection widget] Optional selection can not be removed if a fitting node is always found from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2024.06), Request for Discussion
kislinsk moved T26988: [Checklist] LevelWindow checklist does not provide explicit expected results for sufficient verification from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2024.06)
kislinsk moved T27613: Improve reinit behavior from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · Request for Discussion, MITK (v2023.04)
kislinsk moved T27090: Provide standard NodePredicates from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2024.06), Request for Discussion
kislinsk moved T29163: [XNAT] Opening XNAT session fails from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2024.06)
kislinsk moved T29236: Check for prerequisites and give meaningful hints for missing packages from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2024.06)
kislinsk moved T29242: Revamp nnUNet tool GUI from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2024.06)
kislinsk moved T26394: [Render window manager] Provide tree view / model from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2023.04), Restricted Project
kislinsk moved T29385: [mxn multi widget] Pixel value view does not change on crosshair selection from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2023.04)
kislinsk moved T25057: Check IContextMenuActions and extension points from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2024.06)
kislinsk moved T29210: Clarify / remove axis-labeling for anatomical planes from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2024.06), Request for Discussion
kislinsk moved T29243: nnUNet in MITK: Downloading pre-trained models in Kaapana context from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · MITK (v2024.06), Kaapana (internal)
kislinsk edited projects for T29095: [Image Cropper] Moving of the bounding box can not be undone, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:22 PM · MITK, Checklist
kislinsk edited projects for T29211: Remove "Scaling" from QmitkRegistrationManipulationWidget.ui, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:22 PM · MITK
kislinsk edited projects for T28778: "Use constraint zooming and panning" is only applied after reinit/restart, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:22 PM · MITK, Checklist
kislinsk edited projects for T28803: [Properties] Fine-tune selection widget, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:22 PM · MITK, Checklist
kislinsk edited projects for T29101: [3D Segmentation] Region Growing Tool - Generated Segmentation darkens the ambient image, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:22 PM · MITK, Checklist
kislinsk edited projects for T29336: Changing theme in Preferences has no effect., added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:22 PM · MITK, Checklist
kislinsk edited projects for T29309: [GrowCut] Further remarks regarding GrowCut, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:22 PM · MITK
kislinsk edited projects for T27142: Unit test for average baseline signal, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:22 PM · MITK, Restricted Project
kislinsk edited projects for T28557: Cannot load segmentations from KITS challenge due to unknown pixel type, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:21 PM · MITK, Request for Discussion
kislinsk edited projects for T28782: Scanning directories in DICOM Browser -> Import only works once, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:21 PM · MITK, Checklist
kislinsk edited projects for T28781: Selected series and studies cannot be deleted from DICOM browser without deleting the whole patient, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:21 PM · MITK, Checklist
kislinsk edited projects for T28207: MITK DicomBrowser q/r Retrieve part crash, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:21 PM · MITK, Checklist
kislinsk edited projects for T29381: Move Multilabel classes to Core module, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:21 PM · MITK, Request for Discussion
floca closed T16132: Allow segmentation with several images as Wontfix.
Nov 30 2022, 12:16 PM · MITK (v2023.04), Request for Discussion, Bugzilla
floca closed T28816: [Segmentation] "New Segmentation" dialog to small as Resolved.
Nov 30 2022, 12:13 PM · MITK (v2023.04), Cleared, Restricted Project, Checklist
floca moved T29416: Segmentation utilities can only handle unsigned char and unsigned short, no other types from In candidates to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 12:12 PM · MITK (v2024.06), Missing Info
floca moved T29396: [Segmentation] Newly created labelset image has wrong image type from In candidates to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 12:06 PM · MITK (v2024.06)
floca moved T29313: Add a Test to check if the GrowCut algorithm produces a different output from In candidates to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 12:06 PM · MITK (v2024.06)
floca moved T29369: [Segmentation Utilities] Handle / select different labels independently from In candidates to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 12:05 PM · MITK (v2024.06)
floca moved T27809: [Segmentation Utilities] "Labels" tabs in operations of Utilities view is empty from In candidates to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 12:03 PM · MITK (v2023.12), Request for Discussion
floca moved T29362: [mxn multi widget] Plane suggestion of QmitkSlicesInterpolator does not work correctly from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Nov 30 2022, 12:00 PM · Request for Discussion, MITK (v2023.04)
floca moved T29365: [mxn multi widget] Pointset interaction not working from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Nov 30 2022, 11:58 AM · MITK (v2024.06)
floca moved T29364: [mxn multi widget] Image navigator cannot be used from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Nov 30 2022, 11:58 AM · MITK (v2024.06)
floca moved T29333: [mxn multi widget] Measurements / planar figure not working from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Nov 30 2022, 11:58 AM · MITK (v2024.06)
floca moved T29402: [mxn multi widget] Concept for blocking individual render windows from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Nov 30 2022, 11:58 AM · MITK (v2023.04)
floca moved T29335: [Segmentation] Show interactive warning for uninitialized render window geometry from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Nov 30 2022, 11:57 AM · MITK (v2023.04)
floca moved T29240: [mxn multi widget] Allow different time navigation controller for each individual render window from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Nov 30 2022, 11:57 AM · MITK (v2024.06)
floca placed T27684: [Segmentation] Improve Region Growing 2D algorithm and interaction up for grabs.
Nov 30 2022, 11:52 AM · MITK (v2024.06)
floca moved T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" from In candidates to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 11:39 AM · MITK (v2024.06), Checklist, Request for Discussion
floca added a comment to T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary".

Also regard T25445: MultiLabel segmentation mapper is very slow

Nov 30 2022, 11:39 AM · MITK (v2024.06), Checklist, Request for Discussion
floca moved T25445: MultiLabel segmentation mapper is very slow from In candidates to Segmentation on the MITK (v2023.04) board.

This issue should also be regarded if T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" is done.

Nov 30 2022, 11:38 AM · MITK (v2024.06), Request for Discussion
floca moved T29392: [SEG] Add dedicated writer to store multi-label images in nifti from In candidates to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 11:29 AM · MITK (v2024.06)
floca lowered the priority of T29163: [XNAT] Opening XNAT session fails from High to Normal.
Nov 30 2022, 11:28 AM · MITK (v2024.06)
floca added a parent task for T29027: Move NodeSelectionWidgets to QtWidgets module: T29130: [WorkBench] Segmentation fault when "Close Project" is invoked and QmitkDataStorageComboBox widget is in UI.
Nov 30 2022, 11:22 AM · MITK (v2023.04)
floca added a subtask for T29130: [WorkBench] Segmentation fault when "Close Project" is invoked and QmitkDataStorageComboBox widget is in UI: T29027: Move NodeSelectionWidgets to QtWidgets module.
Nov 30 2022, 11:22 AM · MITK
floca removed a project from T29130: [WorkBench] Segmentation fault when "Close Project" is invoked and QmitkDataStorageComboBox widget is in UI: Request for Discussion.

Now with the preferences moved to micro services, we can move the selection widget T29027 and then use them also here.

Nov 30 2022, 11:22 AM · MITK
floca triaged T29390: How to ease the handling of external generated segmentations as Normal priority.
Nov 30 2022, 11:17 AM · MITK (v2024.06)
floca renamed T29390: How to ease the handling of external generated segmentations from How to easy the handling of external generated segmentations to How to ease the handling of external generated segmentations.
Nov 30 2022, 11:14 AM · MITK (v2024.06)
floca moved T29381: Move Multilabel classes to Core module from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 11:13 AM · MITK, Request for Discussion
kalali moved T25057: Check IContextMenuActions and extension points from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 10:30 AM · MITK (v2024.06)
kalali edited projects for T25057: Check IContextMenuActions and extension points, added: MITK (v2023.04); removed MITK.
Nov 30 2022, 10:30 AM · MITK (v2024.06)
floca moved T28816: [Segmentation] "New Segmentation" dialog to small from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 10:23 AM · MITK (v2023.04), Cleared, Restricted Project, Checklist
floca moved T28884: MITK Flowbench -Save Seg not working, due to file naming issues from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 10:23 AM · MITK (v2023.04), Request for Discussion, Kaapana (internal)
floca moved T29210: Clarify / remove axis-labeling for anatomical planes from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 10:21 AM · MITK (v2024.06), Request for Discussion
floca moved T29236: Check for prerequisites and give meaningful hints for missing packages from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 10:19 AM · MITK (v2024.06)
floca moved T29076: [Segmentation] Pressing DEL should delete a label from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 10:18 AM · MITK (v2024.06), Checklist
floca moved T29243: nnUNet in MITK: Downloading pre-trained models in Kaapana context from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 10:16 AM · MITK (v2024.06), Kaapana (internal)
floca moved T29242: Revamp nnUNet tool GUI from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 10:14 AM · MITK (v2024.06)
floca moved T25445: MultiLabel segmentation mapper is very slow from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 10:09 AM · MITK (v2024.06), Request for Discussion