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Thu, Sep 7
Thu, Sep 7
s434n moved T30192: [MxN] UI elements not visible on Mac from Backlog to MITK Meeting on the Request for Discussion board.
Wed, Sep 6
Wed, Sep 6
kompan committed rMITKccfdc487f4c0: Add model constraints checker in case no default constraints are set. (authored by kompan).
Add model constraints checker in case no default constraints are set.
kompan committed rMITK267628a28f92: Add model constraints checker in case no dafault contraints are set. (authored by kompan).
Add model constraints checker in case no dafault contraints are set.
Aug 31 2023
Aug 31 2023
a178n added a comment to T29652: [Preferences] Cannot open SAM preference page after tool activation.
After suspecting whether python process using std::async would be causing the issue, like below:
m_Future = std::async(std::launch::async, &mitk::SegmentAnythingPythonService::start_python_daemon, this);
I tried starting python process using basic std::thread like shown below:
std::thread([&](){mitk::SegmentAnythingPythonService::start_python_daemon();}).detach();there is no change in behavior.
The issue root cause still eludes me.
Aug 29 2023
Aug 29 2023
s434n added a comment to T28491: [Segmentation] Slice interpolation 'confirm for all slices' sometimes crahes.
I tested this again with the current version of MITK (develop branch) and can see no problems. Interpolation works without problems on my laptop (Windows 10, 32GB RAM)
Aug 24 2023
Aug 24 2023
s434n committed rMITK013da8c575c1: remove unused/outdated QmitkFFmpegWriter import (authored by s434n).
remove unused/outdated QmitkFFmpegWriter import
s434n committed rMITK77eaee663ab1: Decouple TimeNavigation from SliceNavigationController (authored by s434n).
Decouple TimeNavigation from SliceNavigationController
Use concrete variable type and const
Update the time nc before the slice nc
s434n committed rMITK40b57ea76624: adapt new SNC occurences introduced since merging and fix remaining bugs (authored by s434n).
adapt new SNC occurences introduced since merging and fix remaining bugs
s434n committed rMITK0dab5fe5f1ac: Refactor class to work with the new TimeNavigationController (authored by kalali).
Refactor class to work with the new TimeNavigationController
s434n committed rMITK80bda9107823: Refactor class to work with the new TimeNavigationController (authored by kalali).
Refactor class to work with the new TimeNavigationController
s434n committed rMITKf314ae99a2f5: Remove TimeNavigationController parameter / member (authored by kalali).
Remove TimeNavigationController parameter / member
s434n committed rMITKfcd58f5173b5: Remove unnecessary controller / controller-connections (authored by kalali).
Remove unnecessary controller / controller-connections
s434n committed rMITK5c3b7c799bf3: Refactor class to work with the new TimeNavigationController (authored by kalali).
Refactor class to work with the new TimeNavigationController
s434n committed rMITKd58b817f6178: Replace SliceNavigationController with TimeNavigationController (authored by kalali).
Replace SliceNavigationController with TimeNavigationController
s434n committed rMITKfe90eadd9150: Refactor class to work with the new TimeNavigationController (authored by kalali).
Refactor class to work with the new TimeNavigationController
s434n committed rMITKcc1dda7884d6: Replace the SliceNavigationController inside the RenderingManager (authored by kalali).
Replace the SliceNavigationController inside the RenderingManager
s434n committed rMITK0fd0318820f2: Modify BaseController to only hold a single stepper (authored by kalali).
Modify BaseController to only hold a single stepper
s434n committed rMITK79829b658496: Modify the SliceNavigationController to remove time-related data (authored by kalali).
Modify the SliceNavigationController to remove time-related data
s434n committed rMITKed8c3c8ee4a8: Remove unnecessary / unused functions / variable (authored by kalali).
Remove unnecessary / unused functions / variable
Add TimeNavigationController
Aug 23 2023
Aug 23 2023
kompan committed rMDe1c386aa8f47: Add JSON files for unit tests of exponential saturation model. (authored by kompan).
Add JSON files for unit tests of exponential saturation model.
Aug 21 2023
Aug 21 2023
Manually add content of D646.
kompan committed rMITK1d0d458f7bf2: Simplify ternary operator in ComputeSignalFromParameters. (authored by kompan).
Simplify ternary operator in ComputeSignalFromParameters.
kompan committed rMITK0ffc66e2bb66: Remove MitkTestingHelper module from CMakeLists. (authored by kompan).
Remove MitkTestingHelper module from CMakeLists.
kompan committed rMITK6b0baab7416c: Add Two Tissue Compartment FDG Model (PET) unit tests. (authored by kompan).
Add Two Tissue Compartment FDG Model (PET) unit tests.
kompan committed rMITKa8ec0eb02813: Replace if-else-statement by ternary operator. (authored by kompan).
Replace if-else-statement by ternary operator.
kompan committed rMITKadb006373482: Add unit tests for Two Tissue Comparment Model (PET). (authored by kompan).
Add unit tests for Two Tissue Comparment Model (PET).
kompan committed rMITKc61f6712e210: Add Extended One Tissue Compartment Model (PET) unit tests. (authored by kompan).
Add Extended One Tissue Compartment Model (PET) unit tests.
kompan committed rMITK65001a5cc2e7: Remove commented out code in Two Tissue Compartment Model. (authored by kompan).
Remove commented out code in Two Tissue Compartment Model.
kompan committed rMITKb52cf4c42b9c: Add One Tissue Compartment Model (PET) unit tests. (authored by kompan).
Add One Tissue Compartment Model (PET) unit tests.
Manually add content of D646.
Aug 17 2023
Aug 17 2023
As far as I understand the plugin's purpose it is basically an export of an image as CSV file? And the request is to add it to MITK instead of eMITK? Is there some additional functionality involved or could we just add it as another MIME type for images instead of a dedicated plugin?
Aug 16 2023
Aug 16 2023
kislinsk closed T30176: [Segmentation Task List] Improve task selection for long task lists as Resolved.
kislinsk closed T30177: Add command-line app for converting contours like RTSTRUCT to masks as Resolved.
kislinsk added a comment to T30177: Add command-line app for converting contours like RTSTRUCT to masks.
Deleted branch from rMITK MITK: feature/T30177-ContourModelSetToSegmentationApp.
kislinsk committed rMITK3bc0b8d26171: Add ContourModelSetToImage command-line app (authored by kislinsk).
Add ContourModelSetToImage command-line app
kislinsk committed rMITKb4402515969c: Add options for label pixel type and painting pixel value (authored by kislinsk).
Add options for label pixel type and painting pixel value
kislinsk committed rMITK2811bc9d2476: Improve ContoursToImage command-line app (authored by kislinsk).
Improve ContoursToImage command-line app
Improve function names
Reduce unnecessary image copies
Handle unknown output format
kislinsk committed rMITK0b48e640e3b3: Add segmentation app(s) to WorkbenchRelease config (authored by kislinsk).
Add segmentation app(s) to WorkbenchRelease config
kislinsk committed rMITKeb2946f86234: Merge branch 'feature/T30177-ContourModelSetToSegmentationApp' into develop (authored by kislinsk).
Merge branch 'feature/T30177-ContourModelSetToSegmentationApp' into develop
kislinsk added a comment to T30176: [Segmentation Task List] Improve task selection for long task lists.
Deleted branch from rMITK MITK: feature/T30176-FindTask.
Remove include duplicate
Add icon for find actions
kislinsk committed rMITK3b7e78f56fac: Add basic dialog for finding segmentation tasks (authored by kislinsk).
Add basic dialog for finding segmentation tasks
Add tool button for finding tasks
Set tabstop order and label buddies
kislinsk committed rMITK0a64cf1b3e8e: Only load found task if it is not the active task already (authored by kislinsk).
Only load found task if it is not the active task already
Use enum for column identification
Hide dialog's "What's this?" button
Add task filtering
kislinsk committed rMITK32754559ec5b: Persist dialog geometry and column widths (authored by kislinsk).
Persist dialog geometry and column widths
kislinsk committed rMITK559da5ef6110: Fix comparisons of integers of different signs (authored by kislinsk).
Fix comparisons of integers of different signs
Extend user guide
kislinsk committed rMITKc98ae6b71841: Merge branch 'feature/T30176-FindTask' into develop (authored by kislinsk).
Merge branch 'feature/T30176-FindTask' into develop
Aug 12 2023
Aug 12 2023
floca closed T26368: [ModelFitInspector] Performance if multiple bookmark points are added as Wontfix.
After we have moved to Qt6, we then have QtCharts to our disposal and migrate to that.
floca closed T26368: [ModelFitInspector] Performance if multiple bookmark points are added, a subtask of T25832: Migrate ModelFit inspector plugin to MitkChart, as Wontfix.
floca closed T26367: [ModelFitInspector] Remove bookmark doesn't work, a subtask of T25832: Migrate ModelFit inspector plugin to MitkChart, as Wontfix.
After we have moved to Qt6, we then have QtCharts to our disposal and migrate to that.
After we have moved to Qt6, we then have QtCharts to our disposal and migrate to that.
floca closed T26366: [ModelFitInspector] Fixed scaling doesn't work yet, a subtask of T25832: Migrate ModelFit inspector plugin to MitkChart, as Wontfix.
Should be done after(!) we have moved to Qt6 as we then have QtCharts to our disposal and migrate to that.
floca closed T27306: [statistics] Errors caused in MitkChart when using histogram and intensity profile widgets. as Wontfix.
After we have moved to Qt6, we then have QtCharts to our disposal and migrate to that.
floca added a comment to T27285: [Image Statistics] QmitkChart widget should support ID or allow control over labels.
Should be done after(!) we have moved to Qt6 as we then have QtCharts to our disposal and migrate to that.
floca added a parent task for T29406: Make MITK compatible with Qt 6: T26473: Optimize QmitkChartWidget interface.
floca added a subtask for T26473: Optimize QmitkChartWidget interface: T29406: Make MITK compatible with Qt 6.
Should be done after(!) we have moved to Qt6 as we then have QtCharts to our disposal and migrate to that.
floca added a comment to T27284: [Image Statistic] Histogram is only supported with one image and <=1 ROI.
Should be done after(!) we have moved to Qt6 as we then have QtCharts to our disposal and migrate to that.
Aug 11 2023
Aug 11 2023
a178n closed T29560: TotalSegmentator Label naming scheme, a subtask of T29437: [SEG] Add TotalSegmentator, as Resolved.
a178n committed rMITKfb7dfa8e93d7: Add regex for totalsegmentator label name parsing (authored by a178n).
Add regex for totalsegmentator label name parsing
Fix totalsegmentator label name parsing
eisenman moved T30185: Fix typos in bootstrap variables from In Progress to Done on the challengeR board.
eisenman committed rCHALLENGER290da626fa7a: Merge branch 'feature/T30185-FixTyposInBootstrapVariables' into develop (authored by eisenman).
Merge branch 'feature/T30185-FixTyposInBootstrapVariables' into develop
eisenman committed rCHALLENGERb4e33e1b1849: Fix typos in bootstrap variables (authored by eisenman).
Fix typos in bootstrap variables
eisenman renamed T30185: Fix typos in bootstrap variables from Fix typo in bootstrap variables to Fix typos in bootstrap variables.
eisenman moved T30185: Fix typos in bootstrap variables from Backlog to In Progress on the challengeR board.
Aug 10 2023
Aug 10 2023
I introduced the doRNG package to ensure reproducibility on Windows.
Merge tag 'v1.0.5' into develop
eisenman committed rCHALLENGERbeb3b6752ce0: Merge branch 'hotfix/T29361-EnsureReproducibilityWithParallelBootstrapping' (authored by eisenman).
Merge branch 'hotfix/T29361-EnsureReproducibilityWithParallelBootstrapping'
Bump version number
eisenman committed rCHALLENGER422fb99ab49a: Introduce doRNG package to ensure reproducibility on Windows (authored by eisenman).
Introduce doRNG package to ensure reproducibility on Windows
Aug 9 2023
Aug 9 2023
a178n added a revision to T29560: TotalSegmentator Label naming scheme: Unknown Object (Differential Revision).
Pushed new branch to rMITK MITK: feature/T29560-totalseg-label-update.
s434n triaged T30184: [MxN] Turning on data synchronizing hides segmentation of non-visible nodes as Normal priority.
s434n removed a project from T30181: Add option for a "mean" line profile in statistics view: Request for Discussion.
s434n removed a project from T29454: Clarify the versions/editions we publish as installer: Request for Discussion.
We want to have:
- a slick minimum Workbench version
- a fuller / bigger version. Exact contents and name still need to be compiled (e.g. Perfusion, Fitting, ...)