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Aug 1 2020

kislinsk closed T25882: Rewrite dashboard script for CDash 2.6 as Resolved.
Aug 1 2020, 4:58 PM · CI, MITK (v2021.02), Restricted Project
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

Deleted branch hotfix/T25882-CDash-v2.6.

Aug 1 2020, 4:58 PM · CI, MITK (v2021.02), Restricted Project
kislinsk committed rMITK899caed2f76e: Merge branch 'hotfix/T25882-CDash-v2.6' into develop (authored by kislinsk).
Merge branch 'hotfix/T25882-CDash-v2.6' into develop
Aug 1 2020, 4:56 PM
kislinsk committed rMITKf0e722f6a65d: Merge branch 'hotfix/T25882-CDash-v2.6' (authored by kislinsk).
Merge branch 'hotfix/T25882-CDash-v2.6'
Aug 1 2020, 4:55 PM
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

Deleted branch bugfix/T25882-CDash-v2.6.

Aug 1 2020, 4:53 PM · CI, MITK (v2021.02), Restricted Project
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

Pushed new branch hotfix/T25882-CDash-v2.6.

Aug 1 2020, 4:52 PM · CI, MITK (v2021.02), Restricted Project
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

Pushed new branch bugfix/T25882-CDash-v2.6.

Aug 1 2020, 4:43 PM · CI, MITK (v2021.02), Restricted Project
floca added a comment to T26840: Mission Homepage Reorganization .

@thomass Can this task be closed?

Aug 1 2020, 11:53 AM · MITK
kislinsk claimed T25882: Rewrite dashboard script for CDash 2.6.
Aug 1 2020, 8:23 AM · CI, MITK (v2021.02), Restricted Project
kislinsk closed T27638: 2020 Week 31 as Resolved.
Aug 1 2020, 1:26 AM · MITK
kislinsk added a comment to T27638: 2020 Week 31.

Deleted branch release/T27638-2020-Week-31.

Aug 1 2020, 1:26 AM · MITK
kislinsk added a comment to T27526: 2020 Week 27.

Deleted branch release/T27526-2020-Week-27.

Aug 1 2020, 1:26 AM · MITK
kislinsk committed rMITK88aa43536c8c: 2020 Week 31 (Very Late July) (authored by kislinsk).
2020 Week 31 (Very Late July)
Aug 1 2020, 1:25 AM
kislinsk edited the content of Changelog.
Aug 1 2020, 1:21 AM · MITK
kislinsk edited the content of 2020 Week 31 (Very Late July).
Aug 1 2020, 1:20 AM
kislinsk edited projects for T27459: [Perfusion] Use PropertyReleationRules for referencing between input image and parameter maps, added: Breaking Change; removed Noteworthy.
Aug 1 2020, 12:54 AM · Breaking Change, MITK (v2021.02)
kislinsk claimed T27638: 2020 Week 31.
Aug 1 2020, 12:24 AM · MITK
kislinsk closed T27639: Migrate to new CDash site as Resolved.

I wiped out the workspaces of the Jenkins Continuous and Nightly clients which is necessary to apply the new submission URL. I will do the same for eMITK.

Aug 1 2020, 12:11 AM · MITK (v2021.02)
kislinsk added a comment to T27639: Migrate to new CDash site.

Deleted branch bugfix/T27639-MigrateToNewCDashSite.

Aug 1 2020, 12:09 AM · MITK (v2021.02)
kislinsk committed rMITK1d93318bd164: Merge branch 'bugfix/T27639-MigrateToNewCDashSite' into develop (authored by kislinsk).
Merge branch 'bugfix/T27639-MigrateToNewCDashSite' into develop
Aug 1 2020, 12:02 AM

Jul 31 2020

kislinsk added a comment to T27639: Migrate to new CDash site.

Pushed new branch bugfix/T27639-MigrateToNewCDashSite.

Jul 31 2020, 11:59 PM · MITK (v2021.02)
kislinsk triaged T27639: Migrate to new CDash site as Unbreak Now! priority.
Jul 31 2020, 11:56 PM · MITK (v2021.02)
thomass added a revision to T27107: [MITKDoc] Revise Screenshot Maker Plugin Documentation: Unknown Object (Differential Revision).
Jul 31 2020, 5:21 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T27638: 2020 Week 31.

Pushed new branch release/T27638-2020-Week-31.

Jul 31 2020, 1:33 PM · MITK
kislinsk triaged T27638: 2020 Week 31 as Normal priority.
Jul 31 2020, 1:32 PM · MITK
kislinsk created an object: 2020 Week 31 (Very Late July).
Jul 31 2020, 1:31 PM
floca added a revision to T27622: [Segmentation] Make 3D Threshold / UL Threshold only for on a single timestep for a dynamic mask: Unknown Object (Differential Revision).
Jul 31 2020, 1:19 PM · Restricted Project, Cleared, MITK (v2021.02)
floca added a revision to T27621: [Segmentation] 3D Threshold / UL Threshold does not use a timestep != 0 for static masks: Unknown Object (Differential Revision).
Jul 31 2020, 1:19 PM · Restricted Project, Cleared, MITK (v2021.02)
floca triaged T27637: [Segmentation] Multilabel label name dialog on label creation is a UX problem as Normal priority.
Jul 31 2020, 1:10 PM · MITK (v2022.04), Cleared
floca lowered the priority of T27099: [MITKDoc] Revise Clipping Plane Plugin Documentation from Normal to Low.
Jul 31 2020, 11:31 AM · MITK (v2024.06), Cleared
thomass committed rMITK582aadc6da8d: Update text and pngs of the point set interaction documentation (authored by thomass).
Update text and pngs of the point set interaction documentation
Jul 31 2020, 11:30 AM
thomass closed T27103: [MITKDoc] Revise Point Set Interaction Plugin Documentation as Resolved by committing rMITK582aadc6da8d: Update text and pngs of the point set interaction documentation.
Jul 31 2020, 11:30 AM · Cleared, MITK (v2021.02)
floca removed a project from T27095: [MITKDoc] Revise MultiLabel Segmentation Plugin Documentation: Cleared.
Jul 31 2020, 11:30 AM · MITK (v2021.02)
floca removed a project from T27093: [MITKDoc] Revise Segmentation Plugin: Cleared.
Jul 31 2020, 11:29 AM · MITK (v2021.02)
kahl added a comment to T27500: Use Python/C-API for execution of Python Code with MITK-Python-Service.

Pushed new branch feature/T27500-use-PythonCApi-in-python-service-V2.

Jul 31 2020, 9:58 AM · MITK

Jul 30 2020

floca added a parent task for T27616: [Segmentation] Otsu creates static 3D segmentation regardless of segmentation choice: T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.
Jul 30 2020, 10:22 PM · Breaking Change, MITK (v2021.02)
floca added a subtask for T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation: T27616: [Segmentation] Otsu creates static 3D segmentation regardless of segmentation choice.
Jul 30 2020, 10:22 PM · MITK (v2021.10), Missing Info, Restricted Project
thomass added a revision to T27098: [MITKDoc] Revise Image Cropper Plugin Documentation: Restricted Differential Revision.
Jul 30 2020, 2:59 PM · Cleared, MITK (v2021.02)
floca edited projects for T27634: [Registration] Crash at application closure when Registration Manipulator or Evaluator is active, added: MITK (v2021.02); removed MITK.
Jul 30 2020, 1:28 PM · MITK (v2021.02)
floca triaged T27634: [Registration] Crash at application closure when Registration Manipulator or Evaluator is active as Normal priority.
Jul 30 2020, 1:28 PM · MITK (v2021.02)
floca claimed T27621: [Segmentation] 3D Threshold / UL Threshold does not use a timestep != 0 for static masks.
Jul 30 2020, 1:13 PM · Restricted Project, Cleared, MITK (v2021.02)
floca claimed T27622: [Segmentation] Make 3D Threshold / UL Threshold only for on a single timestep for a dynamic mask.
Jul 30 2020, 1:13 PM · Restricted Project, Cleared, MITK (v2021.02)
floca claimed T27112: [MITKDoc] Revise Matchpoint Registration Evaluator Plugin Documentation.
Jul 30 2020, 1:12 PM · Cleared, MITK (v2021.02)
floca closed T27143: Matchpoint Registration Evaluator- Colorblend Bug as Resolved.

As assumed, it was fixed by T27085. Thanks @kislinsk

Jul 30 2020, 1:11 PM · Cleared, MITK (v2021.02), Restricted Project
thomass claimed T27107: [MITKDoc] Revise Screenshot Maker Plugin Documentation.
Jul 30 2020, 1:06 PM · Cleared, MITK (v2021.02)
floca added a revision to T27114: [MITKDoc] Revise Matchpoint Mapper Plugin Documentation: Restricted Differential Revision.
Jul 30 2020, 1:05 PM · Cleared, MITK (v2021.02)
kahl placed T27107: [MITKDoc] Revise Screenshot Maker Plugin Documentation up for grabs.
Jul 30 2020, 11:26 AM · Cleared, MITK (v2021.02)
kahl placed T27101: [MITKDoc] Revise Logging Plugin Documentation up for grabs.
Jul 30 2020, 11:25 AM · Cleared, MITK (v2021.02)
floca added a comment to T27324: Investigate MITK <--> python image transfer.

hm, strange. Ad hoc I cannot give a hint. Good you found a workarround. For further investigation, may be mitk::Image has special wrapping instruction, that interferes with your approach.

Jul 30 2020, 11:17 AM · Auto-closed, MITK
thomass added a revision to T27105: [MITKDoc] Revise Measurement Plugin Documentation: Unknown Object (Differential Revision).
Jul 30 2020, 10:52 AM · Cleared, MITK (v2021.02)
floca edited projects for T27498: [Selection widgets] Define default for auto selection / listening mechanism, added: MITK (v2021.02), Restricted Project; removed MITK.

To finish this task, one should check/verify that all release relevant plugins follow the discussion result.

Jul 30 2020, 10:47 AM · Restricted Project, MITK (v2021.02)
nolden added a comment to T27612: Fix build errors with clang 10.x .

I'm setting up a clang 10 dart client right now. If that is submitting successfully I would close the task

Jul 30 2020, 9:35 AM · Breaking Change, MITK (v2021.02)
thomass added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

I can reproduce the behavior for the US4DCyl but not for the heart 3D+t. But it looks exactly like the error for static segmentation and t=2 (that I showed during the telco).

Jul 30 2020, 9:34 AM · MITK (v2021.10), Missing Info, Restricted Project
floca committed rMITKc5e3da10dab6: T27692 Fixed mitk::IsSubGeometry for oblique geometries. (authored by floca).
T27692 Fixed mitk::IsSubGeometry for oblique geometries.
Jul 30 2020, 8:21 AM
floca committed rMITKdac974bc335d: Fixed mitk::IsSubGeometry for oblique geometries. (authored by floca).
Fixed mitk::IsSubGeometry for oblique geometries.
Jul 30 2020, 8:21 AM
kislinsk triaged T27624: Fix Doxygen errors as High priority.
Jul 30 2020, 6:03 AM · MITK (v2021.02)

Jul 29 2020

kislinsk added a project to T27612: Fix build errors with clang 10.x : Breaking Change.

Is this task resolved with the landing of {D360}?

Jul 29 2020, 11:19 PM · Breaking Change, MITK (v2021.02)
kislinsk added a revision to T27612: Fix build errors with clang 10.x : Unknown Object (Differential Revision).
Jul 29 2020, 11:18 PM · Breaking Change, MITK (v2021.02)
floca committed rMITKc72fa5e21c97: T25805 Cleaned up naming of DICOM related modules (authored by floca).
T25805 Cleaned up naming of DICOM related modules
Jul 29 2020, 9:38 PM
floca committed rMITKec3a2c5a9588: Merge branch 'develop' into feature/T25805-merged (authored by floca).
Merge branch 'develop' into feature/T25805-merged
Jul 29 2020, 9:38 PM
floca committed rMITK9b8c2ef3cbc2: Fixed missed case sensitive naming change (authored by floca).
Fixed missed case sensitive naming change
Jul 29 2020, 9:37 PM
floca committed rMITK738dae120e75: Fixed review remarks (authored by floca).
Fixed review remarks
Jul 29 2020, 9:37 PM
floca committed rMITK61b852be152c: Commit missed changes of one renamed directory (authored by floca).
Commit missed changes of one renamed directory
Jul 29 2020, 9:37 PM
floca committed rMITKfb6195ff763a: Cleaned up naming of DICOM related modules (authored by floca).
Cleaned up naming of DICOM related modules
Jul 29 2020, 9:37 PM
floca closed T25805: Standardize/Rework DICOM module naming as Resolved by committing rMITKfb6195ff763a: Cleaned up naming of DICOM related modules.
Jul 29 2020, 9:37 PM · Noteworthy, Breaking Change, MITK (v2021.02), DICOM
floca committed rMITKe72944cdcf37: Renamed plugin org.mitk.gui.qt.dicom into org.mitk.gui.qt.dicombrowser (authored by floca).
Renamed plugin org.mitk.gui.qt.dicom into org.mitk.gui.qt.dicombrowser
Jul 29 2020, 9:37 PM
floca closed T27001: Rename org.mitk.gui.qt.dicom to org.mitk.gui.qt.dicombrowser as Resolved by committing rMITKe72944cdcf37: Renamed plugin org.mitk.gui.qt.dicom into org.mitk.gui.qt.dicombrowser.
Jul 29 2020, 9:37 PM · Breaking Change, MITK (v2021.02), Cleared
kislinsk added a comment to T27085: 2D region growing tool fails for low intensity regions.

Deleted branch bugfix/T27085-2DRegionGrowing.

Jul 29 2020, 9:33 PM · Cleared, MITK (v2021.02)
kislinsk committed rMITK99e147b96882: Keep region grower thresholds within the pixel type extrema of the reference… (authored by kislinsk).
Keep region grower thresholds within the pixel type extrema of the reference…
Jul 29 2020, 9:33 PM
kislinsk committed rMITKaf6ba9b47f82: Keep region grower thresholds within the pixel type extrema of the reference… (authored by kislinsk).
Keep region grower thresholds within the pixel type extrema of the reference…
Jul 29 2020, 9:33 PM
kislinsk closed T27085: 2D region growing tool fails for low intensity regions as Resolved by committing rMITKaf6ba9b47f82: Keep region grower thresholds within the pixel type extrema of the reference….
Jul 29 2020, 9:33 PM · Cleared, MITK (v2021.02)
kahl added a comment to T27324: Investigate MITK <--> python image transfer.

Seems like I figured it out. What I had to do was to change SWIG_TypeQuery("_p_mitk__Image") to SWIG_TypeQuery("_p_itk__SmartPointerT_mitk__Image_t") and change the type of image to mitk::Image::Pointer *image. When passing Pic3D now and printing the number of dimensions, 3 is printed as one would expect. I will further investigate how to interact with other libraries like SimpleITK.

Jul 29 2020, 4:56 PM · Auto-closed, MITK
floca added a revision to T27001: Rename org.mitk.gui.qt.dicom to org.mitk.gui.qt.dicombrowser: Restricted Differential Revision.
Jul 29 2020, 4:40 PM · Breaking Change, MITK (v2021.02), Cleared
floca committed rMITK65691bb2f0df: Fixed PerfusionMiniApp to also support 2 step linear model (authored by floca).
Fixed PerfusionMiniApp to also support 2 step linear model
Jul 29 2020, 4:10 PM
floca committed rMITKb0e2beec1246: T27581 Fixed PerfusionMiniApp to also support 2 step linear model (authored by floca).
T27581 Fixed PerfusionMiniApp to also support 2 step linear model
Jul 29 2020, 4:10 PM
floca closed T27581: MRPerfusionMiniApp does not support 2-Step-Linear-Model as Resolved by committing rMITK65691bb2f0df: Fixed PerfusionMiniApp to also support 2 step linear model.
Jul 29 2020, 4:10 PM · MITK
kahl added a comment to T27324: Investigate MITK <--> python image transfer.

I tried an approach like @floca suggested with the SWIG wrapping that is already available in MITK. Here is my code to transfer a MITK image from C++ to Python:

Jul 29 2020, 3:59 PM · Auto-closed, MITK
kleina added a member for Deep Learning: t006d.
Jul 29 2020, 3:13 PM
neher closed T27618: Update Readme as Resolved.
Jul 29 2020, 2:46 PM · MITK Diffusion
kalali added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

@thomass I checked Fast Marching 3D and re-opened T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images for the static mask cases.
Could you re-check the dynamic case? I tested it and with t = 0 I got a dynamic mask (4D) with a segmentation only on the first (0) timestep but with t != 0 I have the same problem as described in the mentioned task (green contour nowhere near the seed point).

Jul 29 2020, 2:15 PM · MITK (v2021.10), Missing Info, Restricted Project
kalali renamed T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images from Fast Marching 3D Tool only supported for first time step in 4D images to [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.
Jul 29 2020, 2:09 PM · MITK (v2021.02), Bugzilla
kalali reopened T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images, a subtask of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, as Open.
Jul 29 2020, 2:09 PM · MITK (v2021.10), Missing Info, Restricted Project
kalali reopened T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images as "Open".
Jul 29 2020, 2:09 PM · MITK (v2021.02), Bugzilla
kalali added a parent task for T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images: T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.
Jul 29 2020, 2:05 PM · MITK (v2021.02), Bugzilla
kalali added a subtask for T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation: T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.
Jul 29 2020, 2:05 PM · MITK (v2021.10), Missing Info, Restricted Project
kalali claimed T24771: [MITKDoc] Add a concept documentation for the data storage inspectors and the overhaul of the selection concept.
Jul 29 2020, 1:54 PM · MITK (v2021.02)
kalali added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

So Region Growing 3D seems to work and could probably be used for reference for other algorithms.

Jul 29 2020, 1:53 PM · MITK (v2021.10), Missing Info, Restricted Project
kalali renamed T27621: [Segmentation] 3D Threshold / UL Threshold does not use a timestep != 0 for static masks from [Segmentation] 3D Threshold does not use a timestep != 0 for static masks to [Segmentation] 3D Threshold / UL Threshold does not use a timestep != 0 for static masks.
Jul 29 2020, 1:49 PM · Restricted Project, Cleared, MITK (v2021.02)
kalali renamed T27622: [Segmentation] Make 3D Threshold / UL Threshold only for on a single timestep for a dynamic mask from [Segmentation] Make 3D Threshold only for on a single timestep for a dynamic mask to [Segmentation] Make 3D Threshold / UL Threshold only for on a single timestep for a dynamic mask.
Jul 29 2020, 1:48 PM · Restricted Project, Cleared, MITK (v2021.02)
thomass closed T27615: [Segmentation] Threshold and UL threshold show unwanted behavior on static and dynamic segmentations as Invalid.

duplicate of T27621

Jul 29 2020, 1:03 PM · MITK (v2021.02)
thomass raised the priority of T27616: [Segmentation] Otsu creates static 3D segmentation regardless of segmentation choice from Normal to High.
Jul 29 2020, 1:02 PM · Breaking Change, MITK (v2021.02)
kalali moved T27622: [Segmentation] Make 3D Threshold / UL Threshold only for on a single timestep for a dynamic mask from Backlog to Segmentation on the MITK (v2021.02) board.
Jul 29 2020, 12:58 PM · Restricted Project, Cleared, MITK (v2021.02)
kalali moved T27621: [Segmentation] 3D Threshold / UL Threshold does not use a timestep != 0 for static masks from Backlog to Segmentation on the MITK (v2021.02) board.
Jul 29 2020, 12:58 PM · Restricted Project, Cleared, MITK (v2021.02)
kalali triaged T27622: [Segmentation] Make 3D Threshold / UL Threshold only for on a single timestep for a dynamic mask as High priority.
Jul 29 2020, 12:58 PM · Restricted Project, Cleared, MITK (v2021.02)
kalali triaged T27621: [Segmentation] 3D Threshold / UL Threshold does not use a timestep != 0 for static masks as High priority.
Jul 29 2020, 12:49 PM · Restricted Project, Cleared, MITK (v2021.02)
thomass closed T27617: [ImageCropper] Workbench crashes when the plugin is opened as Resolved.

Resolved with D369

Jul 29 2020, 11:55 AM · MITK (v2021.02)
nolden committed rMITK64c4c822e255: Fix ImageCropper startup crash (authored by nolden).
Fix ImageCropper startup crash
Jul 29 2020, 11:47 AM
nolden committed rMITKbe8970e7a285: Fix ImageCropper startup crash (authored by nolden).
Fix ImageCropper startup crash
Jul 29 2020, 11:47 AM
kompan claimed T27093: [MITKDoc] Revise Segmentation Plugin.
Jul 29 2020, 11:20 AM · MITK (v2021.02)
kompan moved T27619: MR Perfusion: Use model fit result relation rules for predicate definition from Backlog to Perfusion on the MITK (v2021.02) board.
Jul 29 2020, 11:03 AM · Cleared, MITK (v2021.02)