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Sep 18 2020

thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I think the things you changed are all reasonable, the things I would add (I can not do it atm because I don't have access to the document)

Sep 18 2020, 2:39 PM · MITK (v2022.04), Cleared
eisenman moved T27658: LaTeX Warning: There were undefined references from Backlog to In Progress on the challengeR (v1.0) board.
Sep 18 2020, 2:29 PM · challengeR (v1.0)
kompan closed T27743: Clean up table of contents of doxygen documentation as Resolved.
Sep 18 2020, 2:20 PM · Cleared, MITK (v2021.02)
kompan committed rMITKb20efe7f1f95: Clean up table of contents main structure in doxygen documentation. (authored by kompan).
Clean up table of contents main structure in doxygen documentation.
Sep 18 2020, 2:19 PM
kompan committed rMITK85218a7a2c4b: Rename matchpoint frame correction view page and view id. (authored by kompan).
Rename matchpoint frame correction view page and view id.
Sep 18 2020, 2:18 PM
kompan committed rMITKc69f60c1d459: Rename matchpoint visualizer view page. (authored by kompan).
Rename matchpoint visualizer view page.
Sep 18 2020, 2:18 PM
kompan committed rMITKc6a180b62f94: Rename matchpoint algorithm browser view page. (authored by kompan).
Rename matchpoint algorithm browser view page.
Sep 18 2020, 2:18 PM
kompan lowered the priority of T27745: [MITKDoc] Revise Model Fit Generic View Documentation from Normal to Low.
Sep 18 2020, 12:34 PM · MITK (v2022.04)
kompan triaged T27747: New data selection concept for ModelFit Generic Data Fitting as Low priority.
Sep 18 2020, 12:28 PM · MITK (v2022.04)
kompan claimed T27744: [MITKDoc] Revise Model Fit Demo View Documentation.
Sep 18 2020, 12:18 PM · Cleared, MITK (v2021.02)
kompan triaged T27746: New data selection concept for Fit Generator Demo View as Low priority.
Sep 18 2020, 11:40 AM · MITK (v2024.06)
kompan triaged T27745: [MITKDoc] Revise Model Fit Generic View Documentation as Normal priority.
Sep 18 2020, 10:41 AM · MITK (v2022.04)
kompan triaged T27744: [MITKDoc] Revise Model Fit Demo View Documentation as Normal priority.
Sep 18 2020, 10:40 AM · Cleared, MITK (v2021.02)
kompan claimed T27743: Clean up table of contents of doxygen documentation.
Sep 18 2020, 8:50 AM · Cleared, MITK (v2021.02)
kompan triaged T27743: Clean up table of contents of doxygen documentation as Normal priority.
Sep 18 2020, 8:50 AM · Cleared, MITK (v2021.02)

Sep 17 2020

eisenman added a comment to T27677: Update text in reports (feedback from Lena).

Almost all suggestions from Lena can be realized, apart from listing the metrics in the meta data which we don't know.

Sep 17 2020, 3:41 PM · challengeR (v1.0)
eisenman placed T27360: compatibility with R4.0.0 up for grabs.
Sep 17 2020, 2:55 PM · challengeR (v1.0)
eisenman moved T27740: Add missing imports from In Progress to Done on the challengeR (v1.0) board.
Sep 17 2020, 2:53 PM · challengeR (v1.0)
eisenman moved T27252: Multiple cases per algorithm are not detected when missing data was added before from In Progress to Done on the challengeR (v1.0) board.
Sep 17 2020, 2:52 PM · challengeR (v1.0)
eisenman committed rCHALLENGER6a9fa7994fc2: Merge branch 'feature/T27740-AddMissingImports' into develop (authored by eisenman).
Merge branch 'feature/T27740-AddMissingImports' into develop
Sep 17 2020, 2:51 PM
eisenman committed rCHALLENGER5070907484ec: Add missing imports (authored by eisenman).
Add missing imports
Sep 17 2020, 2:49 PM
eisenman moved T27740: Add missing imports from Backlog to In Progress on the challengeR (v1.0) board.
Sep 17 2020, 2:48 PM · challengeR (v1.0)
eisenman triaged T27740: Add missing imports as High priority.
Sep 17 2020, 2:48 PM · challengeR (v1.0)
eisenman added a comment to T27453: Create complete network plot in its function.

Is it not possible to create a plot first on a canvas that contains everything and as a second step add the scaled plot to the report?

Sep 17 2020, 1:45 PM · challengeR (v1.0)
kompan triaged T27739: Inspection positions deletion in ModelFit not updated in data display. as Normal priority.
Sep 17 2020, 1:07 PM · MITK (v2024.06), Cleared
kompan triaged T27738: Curve Color selection not possible in ModelFit Inspector view settings as Normal priority.
Sep 17 2020, 1:02 PM · MITK (v2023.12), Cleared

Sep 16 2020

thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I agree :)

Sep 16 2020, 1:35 PM · MITK (v2022.04), Cleared
kalali added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

We discussed the open todos concerning Checklists (storage, format, language) and decided that this topic should be prioritized higher but not for the milestone of the new release / current documentation refactoring.
I think this would be a good option for the phase after the release but if you have a strong point to do it now, please state here.

Sep 16 2020, 12:21 PM · MITK (v2022.04), Cleared
thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

just started to have a look.

Sep 16 2020, 12:06 PM · MITK (v2022.04), Cleared
eisenman added a comment to T27338: Report contains misleading information on missing values.

I like the proposal!
"0 missing cases have been found in the data set. However, performance of not all algorithms has been observed for all cases. Therefor, missings have been inserted in the following cases:"

Sep 16 2020, 9:43 AM · challengeR (v1.0)

Sep 15 2020

kalali raised the priority of T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Normal to High.

@thomass, @gaoh Can someone please proofread?

Sep 15 2020, 8:11 PM · MITK (v2022.04), Cleared
kalali raised the priority of T27737: Extend "Checkliste Segmentierung – Optionen" from Normal to High.
Sep 15 2020, 8:02 PM · MITK (v2022.04), Cleared
kalali updated the task description for T25804: [Selection concept] Set 'selected' property when using the new selection concept.
Sep 15 2020, 7:54 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion

Sep 14 2020

schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Yes, the workbench is starting without any issues.

Sep 14 2020, 6:07 PM · Missing Info, DICOM, MITK
gaoh added a member for SIDT: m139l.
Sep 14 2020, 4:40 PM
gaoh closed T27110: [MITKDoc] Revise Command Line Tool/ Automatisation Plugin Documentation as Resolved.
Sep 14 2020, 3:32 PM · Cleared, MITK (v2021.02)
gaoh committed rMITKc4b6bb115cd1: T27110 Revice Command Line Tool. (authored by gaoh).
T27110 Revice Command Line Tool.
Sep 14 2020, 3:28 PM
gaoh committed rMITK032e29703e98: T27110 Revice Command Line Tool: (authored by gaoh).
T27110 Revice Command Line Tool:
Sep 14 2020, 3:28 PM
gaoh committed rMITK0fdef86d49b2: update plugin name cmdlinemodules (authored by gaoh).
update plugin name cmdlinemodules
Sep 14 2020, 3:28 PM
gaoh committed rMITKe22741af90b4: Merge branch 'develop' into feature/T27110ReviseCommandLineTool (authored by gaoh).
Merge branch 'develop' into feature/T27110ReviseCommandLineTool
Sep 14 2020, 3:28 PM
gaoh committed rMITKcb64d430b5fa: Merge branch 'develop' into feature/T27110ReviseCommandLineTool (authored by gaoh).
Merge branch 'develop' into feature/T27110ReviseCommandLineTool
Sep 14 2020, 3:28 PM
gaoh committed rMITKc91fd01c42af: updated image statistics documentation. (authored by gaoh).
updated image statistics documentation.
Sep 14 2020, 3:28 PM
floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Did you your "release ldd" Workbench started and worked properly at all? Seems like most of the SOs could not be loaded correctly. Not even MitkCore. I would assume that workbench does not even start?!?

Sep 14 2020, 3:24 PM · Missing Info, DICOM, MITK
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Sep 14 2020, 2:45 PM · MITK (v2022.04), Cleared
kalali triaged T27737: Extend "Checkliste Segmentierung – Optionen" as Normal priority.
Sep 14 2020, 2:42 PM · MITK (v2022.04), Cleared
kalali moved T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Backlog to Segmentation on the MITK (v2021.02) board.
Sep 14 2020, 2:39 PM · MITK (v2022.04), Cleared
schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

I hope I did it right..

Sep 14 2020, 1:19 PM · Missing Info, DICOM, MITK
kalali added a revision to T24771: [MITKDoc] Add a concept documentation for the data storage inspectors and the overhaul of the selection concept: Unknown Object (Differential Revision).
Sep 14 2020, 1:13 PM · MITK (v2021.02)
gaoh added a member for Kaapana (internal): m139l.
Sep 14 2020, 1:10 PM
rosst committed rRMISf8b356bc0a20: add create participants statistics (authored by rosst).
add create participants statistics
Sep 14 2020, 12:01 PM
kompan committed rMITK75a9f6c2b734: Revision of perfusion curve descriptive parameters view documentation (T27709… (authored by kompan).
Revision of perfusion curve descriptive parameters view documentation (T27709…
Sep 14 2020, 9:19 AM
kompan committed rMITKeb645be6e729: Remove contact information section. (authored by kompan).
Remove contact information section.
Sep 14 2020, 9:19 AM
kompan committed rMITK959aa2589d57: Rewrite manual and add parameter calculation visualization figure. (authored by kompan).
Rewrite manual and add parameter calculation visualization figure.
Sep 14 2020, 9:18 AM
kompan committed rMITK64fd20fdc2e5: Adapt vies names for F1-help. (authored by kompan).
Adapt vies names for F1-help.
Sep 14 2020, 9:18 AM

Sep 12 2020

kalali renamed T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Extend "Checkliste Segmentierung – Manuelle Segmentierung" to Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".
Sep 12 2020, 1:04 PM · MITK (v2022.04), Cleared
kalali updated subscribers of T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I updated the document and added content to explicitly test

  • segmentation on a 3D image
  • 3D segmentation (static) on a 4D image
  • 4D segmentation (dynamic) on a 4D image
Sep 12 2020, 12:56 PM · MITK (v2022.04), Cleared

Sep 11 2020

floca updated subscribers of T27718: Miniapp for basic DICOM testing.

@schererj Is this needed for the kaapana release?

Sep 11 2020, 9:22 PM · MITK (v2023.12), Kaapana (internal)
floca added a comment to T27718: Miniapp for basic DICOM testing.

check content, e.g. if != 0 voxels exist etc

Sep 11 2020, 9:13 PM · MITK (v2023.12), Kaapana (internal)
kalali triaged T27721: [Segmentation] 2D Fast Marching crashes with 4D image and static segmentation as High priority.
Sep 11 2020, 6:29 PM · MITK (v2021.02)
kislinsk triaged T27720: mitkPackageTest fails on Windows Nightlies as Normal priority.
Sep 11 2020, 3:19 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca added a comment to T27569: US DICOM images are displayed turquoise and LUT cannot be changed.

Just checked GDCM 3.0.7 if by chance the issue was fixed there, unfortunately not.

Sep 11 2020, 3:15 PM · Restricted Project, MITK
kislinsk placed T27701: Overhaul or remove PluginGenerator up for grabs.
Sep 11 2020, 3:09 PM · MITK, Next Milestone
kislinsk committed rMITKa02df44c8039: Merge branch 'bugfix/T27701-PluginGenerator' into develop (authored by kislinsk).
Merge branch 'bugfix/T27701-PluginGenerator' into develop
Sep 11 2020, 3:09 PM
kislinsk added a comment to T27701: Overhaul or remove PluginGenerator.

Pushed new branch bugfix/T27701-PluginGenerator.

Sep 11 2020, 3:08 PM · MITK, Next Milestone
nolden added a comment to T27569: US DICOM images are displayed turquoise and LUT cannot be changed.

http://gdcm.sourceforge.net/wiki/index.php/Color_Space_Transformations

Sep 11 2020, 2:30 PM · Restricted Project, MITK
nolden added a comment to T27569: US DICOM images are displayed turquoise and LUT cannot be changed.

Just checked GDCM 3.0.7 if by chance the issue was fixed there, unfortunately not.

Sep 11 2020, 2:27 PM · Restricted Project, MITK
neher added a comment to T27718: Miniapp for basic DICOM testing.

check content, e.g. if != 0 voxels exist etc

Sep 11 2020, 1:13 PM · MITK (v2023.12), Kaapana (internal)
kalali moved T23811: PatientViewPlugin ++ from MITK Meeting to Backlog on the Request for Discussion board.
Sep 11 2020, 12:51 PM · Moved to git.dkfz.de, Request for Discussion, MITK
kompan added a comment to T27713: [Segmentation] Disable "New" button when no image is selected.

Good point! It only occurs after I have removed the image node. When I initially open the segmentation plugin, the new button still is deactivated as it should be.

Sep 11 2020, 12:39 PM · MITK (v2021.10), Request for Discussion
kalali moved T26854: Unattended Qt installation from In Progress to Backlog on the CI board.
Sep 11 2020, 12:36 PM · CI, Restricted Project, MITK
kalali added a comment to T27713: [Segmentation] Disable "New" button when no image is selected.

Also, the "red warning" does not change back to "Please select an image" if an image is removed (which was automatically selected before).

Sep 11 2020, 12:35 PM · MITK (v2021.10), Request for Discussion
kislinsk triaged T27718: Miniapp for basic DICOM testing as Wishlist priority.
Sep 11 2020, 12:27 PM · MITK (v2023.12), Kaapana (internal)
kislinsk triaged T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start as Normal priority.
Sep 11 2020, 12:26 PM · MITK (v2021.02)
kislinsk added a parent task for T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start : T27196: Rewrite packaging of MITK.
Sep 11 2020, 12:25 PM · MITK (v2021.02)
kislinsk added a subtask for T27196: Rewrite packaging of MITK: T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start .
Sep 11 2020, 12:25 PM · Moved to git.dkfz.de, MITK, Cleared
kislinsk moved T27701: Overhaul or remove PluginGenerator from Backlog to MITK Meeting on the Request for Discussion board.
Sep 11 2020, 12:20 PM · MITK, Next Milestone
kislinsk claimed T27701: Overhaul or remove PluginGenerator.
Sep 11 2020, 12:20 PM · MITK, Next Milestone
kislinsk added a comment to T27701: Overhaul or remove PluginGenerator.

Yes, let's deactivate them for now (again), and discuss it in the next MITK meeting.

Sep 11 2020, 12:20 PM · MITK, Next Milestone
kalali added a comment to T27713: [Segmentation] Disable "New" button when no image is selected.

Also, the checklist states "Er ist disabled"

Sep 11 2020, 12:03 PM · MITK (v2021.10), Request for Discussion
clueth added projects to T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start : MITK, Restricted Project.
Sep 11 2020, 12:02 PM · MITK (v2021.02)
kalali added a comment to T27506: Extend checklists for segmentation view.

What exactly? I copied the checklists to my local machine and I'm working on T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

Sep 11 2020, 11:48 AM · MITK (v2022.04), Cleared
kalali renamed T26989: [Checklist] GUI test data originates from different sources from [Checklist] GUI test data originates from different sources to [Checklist] GUI test data originates from different sources.
Sep 11 2020, 11:47 AM · MITK (v2021.10)
nolden added a comment to T26451: DICOM plugin cannot parse DICOM directories in macOS installer.

@jsolislemus Sorry for the long delay, I kind of missed your comment and related discussions happened in T27669

Sep 11 2020, 11:45 AM · MITK
wiesenfa added a comment to T27338: Report contains misleading information on missing values.

the first sentence refers to the fact that no missings have been found in the data set. would rephrasing to "0 missing cases entered in the data set have been found" help? the next sentence is about cases which have been inserted by the sanity check. Would adding "However, ..." in between help?
If you have any other suggestions, I would be happy to include them

Sep 11 2020, 11:42 AM · challengeR (v1.0)
clueth updated the task description for T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start .
Sep 11 2020, 11:37 AM · MITK (v2021.02)
kislinsk added a member for MIC: b030s.
Sep 11 2020, 11:23 AM
nolden added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

@schererj we just discussed this in the MITK meeting. Could you try something? It would be interesting to compare the outputs of

Sep 11 2020, 11:22 AM · Missing Info, DICOM, MITK
schererj created T27718: Miniapp for basic DICOM testing.
Sep 11 2020, 10:58 AM · MITK (v2023.12), Kaapana (internal)
clueth created T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start .
Sep 11 2020, 10:43 AM · MITK (v2021.02)
floca added a comment to T27506: Extend checklists for segmentation view.

Damn I have forgotten to copy the checklist to a reachable share. @kalali Is it already done now or obsolete?

Sep 11 2020, 10:33 AM · MITK (v2022.04), Cleared
kalali added a comment to T27506: Extend checklists for segmentation view.

All tools have to check for the following usage scenario:

  • All this with an image which time geometry does not start at 0 ms (e.g. MITK-Data/3D+t-ITKIO-TestData/LinearModel_4D_arbitrary_time_geometry.nrrd)
Sep 11 2020, 10:22 AM · MITK (v2022.04), Cleared
nolden added a project to T27701: Overhaul or remove PluginGenerator: Request for Discussion.

Since we have this task now I suggest to deactivate them "somewhere globally" and discuss later how to proceed. My guess would be it is quite some effort. Having tests for the generator, packging and the extension mechanism is very important I think, but I'm not sure what the current tests cover and if it's worth to fix.

Sep 11 2020, 10:15 AM · MITK, Next Milestone
kalali triaged T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" as Normal priority.
Sep 11 2020, 10:10 AM · MITK (v2022.04), Cleared
kalali added a comment to T27506: Extend checklists for segmentation view.

I started with the checklists I from E130-Daten\Release\Checklisten\MITK Workbench Release.

Sep 11 2020, 10:07 AM · MITK (v2022.04), Cleared
kislinsk edited Description on Tassilo Wald.
Sep 11 2020, 9:51 AM
kislinsk edited Description on Tassilo Wald.
Sep 11 2020, 9:50 AM
kislinsk created Tassilo Wald.
Sep 11 2020, 9:29 AM
kislinsk created webChallengeR.
Sep 11 2020, 9:15 AM

Sep 10 2020

kislinsk added a project to T27263: Measurements and pointsets display no valuable information: MITK.
Sep 10 2020, 5:38 PM · MITK (v2022.04)
kislinsk added a project to T27339: Provide public MITK ModelFit installer on a regular basis: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)