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Sep 24 2020

kompan committed rMITK39de0380e119: Update Location definition. (authored by kompan).
Update Location definition.
Sep 24 2020, 10:27 AM
kompan committed rMITK71b6e8863aff: Update documentation. (authored by kompan).
Update documentation.
Sep 24 2020, 10:27 AM
kompan committed rMITK00975fc60625: Remove sentence about default path in the usage section. (authored by kompan).
Remove sentence about default path in the usage section.
Sep 24 2020, 10:27 AM
kompan committed rMITK64a361dd73f4: Update images. (authored by kompan).
Update images.
Sep 24 2020, 10:27 AM
kompan triaged T27772: Clean up ModelFitInspector in TOC of doxygen documentation as Normal priority.
Sep 24 2020, 9:37 AM · Cleared, MITK (v2021.02)
aguilera moved T27764: [shiny] Detect early when insufficient number of columns are loaded from Backlog to In Progress on the webChallengeR board.
Sep 24 2020, 9:14 AM · webChallengeR
floca committed rMITK3d7a1b765f58: T27111 - Revise documentation of MatchPoint Visualizer (authored by floca).
T27111 - Revise documentation of MatchPoint Visualizer
Sep 24 2020, 9:06 AM
floca committed rMITKd887bc53b9bb: Fixed review remarks (authored by floca).
Fixed review remarks
Sep 24 2020, 9:06 AM
floca committed rMITKfaf315c77212: Revise documentation of MatchPoint Visualizer (authored by floca).
Revise documentation of MatchPoint Visualizer
Sep 24 2020, 9:06 AM
floca closed T27111: [MITKDoc] Revise Matchpoint Registration Visualizer Plugin Documentation as Resolved by committing rMITKfaf315c77212: Revise documentation of MatchPoint Visualizer.
Sep 24 2020, 9:06 AM · Cleared, MITK (v2021.02)
aguilera moved T27765: [shiny] Make sure that column specified for metric values has numeric values from In Progress to Done on the webChallengeR board.
Sep 24 2020, 9:05 AM · webChallengeR
aguilera moved T27765: [shiny] Make sure that column specified for metric values has numeric values from Backlog to In Progress on the webChallengeR board.
Sep 24 2020, 9:04 AM · webChallengeR

Sep 23 2020

eisenman moved T27769: Top x performing algorithms are not mentioned in the reports anymore from In Progress to Done on the challengeR (v1.0) board.

This issue is fixed in T27677.

Sep 23 2020, 11:24 PM · challengeR (v1.0)
eisenman moved T27677: Update text in reports (feedback from Lena) from In Progress to Done on the challengeR (v1.0) board.
Sep 23 2020, 11:24 PM · challengeR (v1.0)
eisenman added a comment to T27677: Update text in reports (feedback from Lena).

In section 3.2.1 "Visualizing bootstrap results", two visualization methods are mentioned, but only one is contained in the report: "To investigate which tasks separate algorithms well (i.e., lead to a stable ranking), two visualization methods
are recommended."

Do we add a second plot or adapt the text?

Sep 23 2020, 11:24 PM · challengeR (v1.0)
eisenman created T27770: Inconsistency in report description.
Sep 23 2020, 11:22 PM · challengeR (v1.0)
eisenman committed rCHALLENGER53cad48c02bb: Merge branch 'feature/T27677-RestructureReports' into develop (authored by eisenman).
Merge branch 'feature/T27677-RestructureReports' into develop
Sep 23 2020, 11:20 PM
eisenman committed rCHALLENGER3487afdc60ae: Rephrase some explanations (authored by eisenman).
Rephrase some explanations
Sep 23 2020, 11:17 PM
eisenman committed rCHALLENGERce659d3df8a2: Mention top x performing algorithms in the single-task reports (authored by eisenman).
Mention top x performing algorithms in the single-task reports
Sep 23 2020, 11:17 PM
aguilera moved T27758: [shiny] Remove "next" button from page "Generate report" from In Progress to Done on the webChallengeR board.
Sep 23 2020, 10:50 PM · webChallengeR
aguilera moved T27758: [shiny] Remove "next" button from page "Generate report" from Backlog to In Progress on the webChallengeR board.
Sep 23 2020, 10:45 PM · webChallengeR
aguilera moved T27757: [shiny] Contradicting instruction on page "Uncertainty analysis" from In Progress to Done on the webChallengeR board.
Sep 23 2020, 10:42 PM · webChallengeR
aguilera moved T27757: [shiny] Contradicting instruction on page "Uncertainty analysis" from Backlog to In Progress on the webChallengeR board.
Sep 23 2020, 10:39 PM · webChallengeR
aguilera moved T27766: [shiny] Update workflow figure from In Progress to Done on the webChallengeR board.
Sep 23 2020, 10:39 PM · webChallengeR
aguilera moved T27766: [shiny] Update workflow figure from Backlog to In Progress on the webChallengeR board.
Sep 23 2020, 10:31 PM · webChallengeR
aguilera moved T27761: [shiny] Prevent generation of report if field "name" is empty from In Progress to Done on the webChallengeR board.
Sep 23 2020, 10:31 PM · webChallengeR
aguilera moved T27761: [shiny] Prevent generation of report if field "name" is empty from Backlog to In Progress on the webChallengeR board.
Sep 23 2020, 9:47 PM · webChallengeR
eisenman claimed T27769: Top x performing algorithms are not mentioned in the reports anymore.
Sep 23 2020, 6:58 PM · challengeR (v1.0)
eisenman triaged T27769: Top x performing algorithms are not mentioned in the reports anymore as High priority.
Sep 23 2020, 6:39 PM · challengeR (v1.0)
eisenman committed rCHALLENGER4edfe8f3555b: Complete overview of plots (authored by eisenman).
Complete overview of plots
Sep 23 2020, 5:18 PM
kislinsk triaged T27663: Crosshair navigation not disabled in QmitkMeasurementView as Low priority.
Sep 23 2020, 4:37 PM · Breaking Change, MITK
kalali closed T27659: Refactor BasicImageProcessing plugin to use the new node selection widgets as Resolved.
Sep 23 2020, 3:06 PM · MITK, Cleared
kalali closed T27659: Refactor BasicImageProcessing plugin to use the new node selection widgets, a subtask of T24775: Refactor plugins to use the new node selection widgets, as Resolved.
Sep 23 2020, 3:06 PM · MITK, Restricted Project, Cleared
kalali committed rMITK37cb6b019f24: Refactor BasicImageProcessing plugin to use the new node selection widgets (authored by kalali).
Refactor BasicImageProcessing plugin to use the new node selection widgets
Sep 23 2020, 3:04 PM
kalali committed rMITKc62c87720cd3: Correct combo box information string (authored by kalali).
Correct combo box information string
Sep 23 2020, 3:04 PM
kalali committed rMITKad3b729fbec7: Use different signal-slot connection syntax (authored by kalali).
Use different signal-slot connection syntax
Sep 23 2020, 3:04 PM
kalali committed rMITKa3af275fcd47: Use new Qt5 signal-slot syntax (authored by kalali).
Use new Qt5 signal-slot syntax
Sep 23 2020, 3:04 PM
kalali committed rMITK3a674ca1e74d: Use smart pointer explicitly (authored by kalali).
Use smart pointer explicitly
Sep 23 2020, 3:04 PM
kalali committed rMITK1ce667e7d8c1: Add single node selection widgets (authored by kalali).
Add single node selection widgets
Sep 23 2020, 3:04 PM
kalali committed rMITK12a990bdeb32: Remove dead functions (authored by kalali).
Remove dead functions
Sep 23 2020, 3:04 PM
kalali committed rMITKfe2e8ad01759: Clean class, remove unnecessary comments, use auto (authored by kalali).
Clean class, remove unnecessary comments, use auto
Sep 23 2020, 3:04 PM
eisenman created T27766: [shiny] Update workflow figure.
Sep 23 2020, 12:16 PM · webChallengeR
kompan claimed T27115: [MITKDoc] Revise Matchpoint Frame Correction Plugin Documentation.
Sep 23 2020, 12:13 PM · Cleared, MITK (v2021.02)
kompan claimed T27116: [MITKDoc] Revise Matchpoint Algorithm Browser Plugin Documentation.
Sep 23 2020, 12:12 PM · Cleared, MITK (v2021.02)
eisenman triaged T27765: [shiny] Make sure that column specified for metric values has numeric values as High priority.
Sep 23 2020, 12:12 PM · webChallengeR
eisenman triaged T27764: [shiny] Detect early when insufficient number of columns are loaded as High priority.
Sep 23 2020, 12:11 PM · webChallengeR
eisenman triaged T27761: [shiny] Prevent generation of report if field "name" is empty as High priority.
Sep 23 2020, 11:40 AM · webChallengeR
eisenman created T27758: [shiny] Remove "next" button from page "Generate report".
Sep 23 2020, 11:17 AM · webChallengeR
eisenman created T27757: [shiny] Contradicting instruction on page "Uncertainty analysis".
Sep 23 2020, 11:14 AM · webChallengeR
kislinsk moved T27721: [Segmentation] 2D Fast Marching crashes with 4D image and static segmentation from Backlog to Segmentation on the MITK (v2021.02) board.
Sep 23 2020, 10:31 AM · MITK (v2021.02)
kislinsk moved T27737: Extend "Checkliste Segmentierung – Optionen" from Backlog to Segmentation on the MITK (v2021.02) board.
Sep 23 2020, 10:31 AM · MITK (v2022.04), Cleared
nolden closed T27438: Fix compile errors on Fedora 32 using gcc 10.1 as Resolved.

This is resolved, dart client is running on my workstation

Sep 23 2020, 9:46 AM · MITK (v2021.02)
nolden closed T27612: Fix build errors with clang 10.x as Resolved.

Clang 10 on Linux configuration is running now nightly on my desktop machine. "WorkbenchRelease" is green, "All" unfortunately hits an internal clang error [1][2]. Setting this up on ubuntu would probably solve this, or some update on fedora.

Sep 23 2020, 9:45 AM · Breaking Change, MITK (v2021.02)
kompan claimed T27745: [MITKDoc] Revise Model Fit Generic View Documentation.
Sep 23 2020, 9:37 AM · MITK (v2022.04)
kompan closed T27744: [MITKDoc] Revise Model Fit Demo View Documentation as Resolved.
Sep 23 2020, 9:37 AM · Cleared, MITK (v2021.02)
kompan committed rMITKfccf5e1fdb9f: Revise fit generator demo view documentation. (authored by kompan).
Revise fit generator demo view documentation.
Sep 23 2020, 9:33 AM
kompan added a comment to T27744: [MITKDoc] Revise Model Fit Demo View Documentation.

Pushed new branch bugfix/T27744-ReviseModelFitDemo.

Sep 23 2020, 9:32 AM · Cleared, MITK (v2021.02)
kompan closed T27104: [MITKDoc] Revise Modelfit Plugin Documentation as Resolved.
Sep 23 2020, 9:19 AM · Cleared, MITK (v2021.02)
kompan committed rMITK2ae1dd0a4a8a: Revise ModelFit Inspector View documentation. (authored by kompan).
Revise ModelFit Inspector View documentation.
Sep 23 2020, 9:18 AM
kompan committed rMITK1f58904cfd7a: Rewording. (authored by kompan).
Rewording.
Sep 23 2020, 9:18 AM
kompan committed rMITKfdc97a9807ca: Correct typo. (authored by kompan).
Correct typo.
Sep 23 2020, 9:18 AM
kompan committed rMITKf270b3ecdb88: Update screenshots. (authored by kompan).
Update screenshots.
Sep 23 2020, 9:18 AM
kompan committed rMITK792f47ef6f7f: Revise and update documentation. Make sure T1-Help works. (authored by kompan).
Revise and update documentation. Make sure T1-Help works.
Sep 23 2020, 9:18 AM
kompan committed rMITK1727e4b9d081: Remove contact information section. (authored by kompan).
Remove contact information section.
Sep 23 2020, 9:18 AM
kislinsk added a comment to T27196: Rewrite packaging of MITK.

Pushed new branch bugfix/T27196-RewritePackaging.

Sep 23 2020, 8:21 AM · Moved to git.dkfz.de, MITK, Cleared
kislinsk added a comment to T27196: Rewrite packaging of MITK.

Sep 23 2020, 8:21 AM · Moved to git.dkfz.de, MITK, Cleared
kislinsk added a comment to T27663: Crosshair navigation not disabled in QmitkMeasurementView .

What version of MITK do you use? I cannot reproduce any trouble with the cross hair while placing planar figures.

Sep 23 2020, 4:54 AM · Breaking Change, MITK

Sep 22 2020

kislinsk closed T19407: Basic image processing fixes as Wontfix.

Hi there! 🙂

Sep 22 2020, 7:09 AM · Auto-closed, Request for Discussion, Bugzilla, MITK
kislinsk closed T25403: Warning 4251 is not disabled globally as Wontfix.

Hi there! 🙂

Sep 22 2020, 7:09 AM · Auto-closed, MITK
kislinsk added a comment to T27624: Fix Doxygen errors.

Deleted branch bugfix/T27624-FixDoxygenErrors.

Sep 22 2020, 7:01 AM · MITK (v2021.02)
kislinsk committed rMITK0d336d68636c: Restrict input of documentation generation to header files (authored by kislinsk).
Restrict input of documentation generation to header files
Sep 22 2020, 7:00 AM
kislinsk closed T27624: Fix Doxygen errors as Resolved by committing rMITK0d336d68636c: Restrict input of documentation generation to header files.
Sep 22 2020, 7:00 AM · MITK (v2021.02)

Sep 21 2020

eisenman committed rCHALLENGERe3ef40f37895: Adapt sections (authored by eisenman).
Adapt sections
Sep 21 2020, 11:48 PM
eisenman committed rCHALLENGER8ba1c489befb: Cite paper (authored by eisenman).
Cite paper
Sep 21 2020, 11:48 PM
eisenman committed rCHALLENGER71695c6b7ffa: Use challenge name in description (authored by eisenman).
Use challenge name in description
Sep 21 2020, 11:48 PM
eisenman added a comment to T27677: Update text in reports (feedback from Lena).

In section 3.2.1 "Visualizing bootstrap results", two visualization methods are mentioned, but only one is contained in the report: "To investigate which tasks separate algorithms well (i.e., lead to a stable ranking), two visualization methods
are recommended."

Sep 21 2020, 7:01 PM · challengeR (v1.0)
eisenman claimed T27677: Update text in reports (feedback from Lena).
Sep 21 2020, 6:58 PM · challengeR (v1.0)
kislinsk renamed Kaapana (internal) from d:cipher to Kaapana (internal).
Sep 21 2020, 4:31 PM
kislinsk renamed T27030: Packaging does not work with NSIS v3.x from Building mitk installer on windows failed. to Packaging does not work with NSIS v3.x.
Sep 21 2020, 1:21 PM · Noteworthy, MITK (v2021.02)
neher added a comment to T27718: Miniapp for basic DICOM testing.

Maybe a nice introduction project for a new student.

Sep 21 2020, 12:07 PM · MITK (v2023.12), Kaapana (internal)
kislinsk closed T27030: Packaging does not work with NSIS v3.x, a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Sep 21 2020, 12:05 PM · Moved to git.dkfz.de, MITK, Cleared
kislinsk closed T27030: Packaging does not work with NSIS v3.x as Resolved.
Sep 21 2020, 12:05 PM · Noteworthy, MITK (v2021.02)
kislinsk added a comment to T27030: Packaging does not work with NSIS v3.x.

Deleted branch bugfix/T27030-MigrateToNSISv3.

Sep 21 2020, 12:00 PM · Noteworthy, MITK (v2021.02)
kislinsk committed rMITK93926fb829a2: Merge branch 'bugfix/T27030-MigrateToNSISv3' into develop (authored by kislinsk).
Merge branch 'bugfix/T27030-MigrateToNSISv3' into develop
Sep 21 2020, 11:59 AM
kislinsk added a comment to T27030: Packaging does not work with NSIS v3.x.

Pushed new branch bugfix/T27030-MigrateToNSISv3.

Sep 21 2020, 11:58 AM · Noteworthy, MITK (v2021.02)
kislinsk claimed T27030: Packaging does not work with NSIS v3.x.

This happens with NSIS 3.x. We use NSIS 2.x. However, CMake dropped NSIS 2.x support in version 3.17, so we should finally get rid of this error and also require NSIS 3.x.

Sep 21 2020, 11:55 AM · Noteworthy, MITK (v2021.02)
schererj added a comment to T27718: Miniapp for basic DICOM testing.

This is not planned for the Kaapana release.

Sep 21 2020, 11:21 AM · MITK (v2023.12), Kaapana (internal)
kalali added a revision to T27744: [MITKDoc] Revise Model Fit Demo View Documentation: Unknown Object (Differential Revision).
Sep 21 2020, 10:54 AM · Cleared, MITK (v2021.02)
eisenman added a comment to T27748: Decide on limit for algorithms in plot legends.

The plots can already be limited to the top x performing algorithms. This can be reused in that case. Then the question is how many legend items are we going to "guarantee" appearing nicely?

Sep 21 2020, 9:32 AM · challengeR (v1.0)
reinkea added a comment to T27748: Decide on limit for algorithms in plot legends.

One strategy would be to add an optional argument in which the number of displayed teams can be specified. For challenges with 200 participants, even multiple columns might be confusing.

Sep 21 2020, 9:09 AM · challengeR (v1.0)

Sep 18 2020

eisenman committed rCHALLENGERcfb5ffa0fa05: Keep cases generic (authored by eisenman).
Keep cases generic
Sep 18 2020, 7:01 PM
eisenman moved T27677: Update text in reports (feedback from Lena) from Backlog to In Progress on the challengeR (v1.0) board.
Sep 18 2020, 6:55 PM · challengeR (v1.0)
eisenman moved T27474: Legend of line plot has missing legend title and algorithm from In Progress to Done on the challengeR (v1.0) board.

The 19 algorithms are shown correctly. The strategy for more algorithms is discussed in T27748.

Sep 18 2020, 6:52 PM · challengeR (v1.0)
eisenman created T27748: Decide on limit for algorithms in plot legends.
Sep 18 2020, 6:51 PM · challengeR (v1.0)
eisenman moved T27475: Legend of blob plot has missing legend title and algorithms from In Progress to Done on the challengeR (v1.0) board.

The 19 algorithms are shown correctly.

Sep 18 2020, 6:39 PM · challengeR (v1.0)
eisenman added a comment to T27294: add multiple figure output formats in report with option clean=TRUE.

It works with the vector. The generated jpeg and png files have a quite low resolution and are as such not really reusable (e.g. in a presentation slide). Can you increase the resolution?

Sep 18 2020, 5:42 PM · challengeR (v1.0)
eisenman moved T27658: LaTeX Warning: There were undefined references from In Progress to Done on the challengeR (v1.0) board.
Sep 18 2020, 5:14 PM · challengeR (v1.0)
eisenman committed rCHALLENGERbf889b00d8e6: Merge branch 'feature/T27658-FixUndefinedReference' into develop (authored by eisenman).
Merge branch 'feature/T27658-FixUndefinedReference' into develop
Sep 18 2020, 5:08 PM
eisenman committed rCHALLENGER91d75517df45: Add individual plot description without need of referencing (authored by eisenman).
Add individual plot description without need of referencing
Sep 18 2020, 5:06 PM
eisenman added a comment to T27658: LaTeX Warning: There were undefined references.

The warning is raised because the label is defined when bootstrapping is used but also referenced when bootstrapping is not used.

Sep 18 2020, 4:44 PM · challengeR (v1.0)