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Oct 12 2020

kompan triaged T27846: [MITKDoc] Segmentation Flow view documentation as Low priority.
Oct 12 2020, 8:59 AM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk triaged T27844: CDash links to commits in phabricator seems not to work correctly as Normal priority.
Oct 12 2020, 12:36 AM · Restricted Project, Restricted Project, MITK
kislinsk claimed T27844: CDash links to commits in phabricator seems not to work correctly.
Oct 12 2020, 12:32 AM · Restricted Project, Restricted Project, MITK
kislinsk added a comment to T27844: CDash links to commits in phabricator seems not to work correctly.

The quick fix would be to change the repository base URL in the CDash project settings to MITK but I guess the preferred solution may be something like a setting in the MITK CDash script to decide if MITK should be the repository of interest or an MITK extension should be the repository of interest. Thinking about it, it probably must be a combination of CDash project settings and CDash script as we cannot change project settings from script but probably we can somehow achieve to report a revision from another repository than MITK in the update step.

Oct 12 2020, 12:31 AM · Restricted Project, Restricted Project, MITK
kislinsk added projects to T27844: CDash links to commits in phabricator seems not to work correctly: MITK, Restricted Project, Restricted Project.
Oct 12 2020, 12:26 AM · Restricted Project, Restricted Project, MITK

Oct 11 2020

floca created T27844: CDash links to commits in phabricator seems not to work correctly.
Oct 11 2020, 12:43 PM · Restricted Project, Restricted Project, MITK
amancino90 added a comment to T27663: Crosshair navigation not disabled in QmitkMeasurementView .

I'm currently in develop branch (0d336d68).
What I meant to say is that, from what I see in QmitkMeasurementView, the crosshair navigation should be limited when placing a figure. However, the method QmitkMeasurementView::DisableCrosshairNavigation() fails to load the limited display interactor.

Oct 11 2020, 2:32 AM · Breaking Change, MITK

Oct 9 2020

eisenman triaged T27842: [shiny] Error while generating single-task report as High priority.
Oct 9 2020, 3:18 PM · webChallengeR
aguilera moved T27838: [shiny] Add configuration option to indicate order of metric values from In Progress to Done on the webChallengeR board.
Oct 9 2020, 3:08 PM · webChallengeR
e148c moved T27832: Complete troublshooting from In Progress to Done on the challengeR board.
Oct 9 2020, 2:45 PM · challengeR (v1.0)
e148c committed rCHALLENGERe3d41a469d77: Merge branch 'feature/T27832-troubleshooting2' into develop (authored by e148c).
Merge branch 'feature/T27832-troubleshooting2' into develop
Oct 9 2020, 2:44 PM
e148c committed rCHALLENGERab1578e1ce2a: complete troubleshooting (authored by e148c).
complete troubleshooting
Oct 9 2020, 2:44 PM
aguilera moved T27838: [shiny] Add configuration option to indicate order of metric values from Backlog to In Progress on the webChallengeR board.
Oct 9 2020, 2:37 PM · webChallengeR
kalali closed T27721: [Segmentation] 2D Fast Marching crashes with 4D image and static segmentation, a subtask of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, as Resolved.
Oct 9 2020, 2:36 PM · MITK (v2021.10), Missing Info, Restricted Project
kalali closed T27721: [Segmentation] 2D Fast Marching crashes with 4D image and static segmentation as Resolved.
Oct 9 2020, 2:36 PM · MITK (v2021.02)
kalali added a comment to T27721: [Segmentation] 2D Fast Marching crashes with 4D image and static segmentation.

I landed the changes of D423. For the next steps, consider T27507#211912.

Oct 9 2020, 2:36 PM · MITK (v2021.02)
kalali committed rMITKece31f3c79b9: 2D Fast Marching segmentation crashes with 4D image and static segmentation (authored by kalali).
2D Fast Marching segmentation crashes with 4D image and static segmentation
Oct 9 2020, 2:35 PM
kalali committed rMITKa3e155361a43: Transform current time step from reference image to working image (authored by kalali).
Transform current time step from reference image to working image
Oct 9 2020, 2:35 PM
kalali closed T27800: [Segmentation] Live Wire crashes with 4D image and static segmentation, a subtask of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, as Resolved.
Oct 9 2020, 2:33 PM · MITK (v2021.10), Missing Info, Restricted Project
kalali closed T27800: [Segmentation] Live Wire crashes with 4D image and static segmentation as Resolved.

I landed the changes of D424. For the next steps, consider T27507#211912.

Oct 9 2020, 2:33 PM · MITK (v2021.02)
kalali committed rMITK98f05ef6825b: Live Wire segmentation crashes with 4D image and static segmentation (authored by kalali).
Live Wire segmentation crashes with 4D image and static segmentation
Oct 9 2020, 2:32 PM
kalali committed rMITKe9da1a8162ac: Transform current time step from reference image to working image (authored by kalali).
Transform current time step from reference image to working image
Oct 9 2020, 2:31 PM
e148c committed rCHALLENGER84da4f5ab191: test complete troubleshooting (authored by e148c).
test complete troubleshooting
Oct 9 2020, 1:58 PM
floca added a parent task for T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG: Unknown Object (Maniphest Task).
Oct 9 2020, 1:22 PM · Moved to git.dkfz.de, MITK (v2024.12), Cleared
aguilera moved T27839: [shiny] Second report cannot be downloaded from Backlog to Done on the webChallengeR board.
Oct 9 2020, 1:02 PM · webChallengeR
aguilera moved T27822: [shiny] Type of files can be changed in the file dialog from Backlog to Done on the webChallengeR board.
Oct 9 2020, 12:18 PM · webChallengeR
kalali added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

We had a discussion about refactoring the segmentation tools (similar to {D380}). The idea is to outsource redundant code into base classes (e.g. time-management, slice extraction, input data checks etc.) to have a single point of truth for the starting point of the different segmentation-tool-algorithms. This would make the tools less error prone and can simplify testing (even allow automatic testing for the input management steps) (see T27800#211467).

Oct 9 2020, 12:18 PM · MITK (v2021.10), Missing Info, Restricted Project
aguilera moved T27828: [shiny] Error message when wrong type in text field from Done to Backlog on the webChallengeR board.
Oct 9 2020, 12:17 PM · webChallengeR
aguilera moved T27828: [shiny] Error message when wrong type in text field from Backlog to Done on the webChallengeR board.
Oct 9 2020, 12:15 PM · webChallengeR
nolden added a comment to T27383: Update external toolkits.

OpenCV 3.4.11 (https://opencv.org/releases/)

Oct 9 2020, 11:55 AM · Noteworthy, MITK (v2021.02)
nolden added a comment to T27383: Update external toolkits.

Trivial should be:

Oct 9 2020, 11:54 AM · Noteworthy, MITK (v2021.02)
aguilera added a comment to T27822: [shiny] Type of files can be changed in the file dialog.

Known issue: https://github.com/rstudio/rstudio/issues/4718

Oct 9 2020, 11:43 AM · webChallengeR
kislinsk removed a project from T27489: Deprecate and correct QmitkSliceWidget?: Request for Discussion.

Fix! :-)

Oct 9 2020, 11:39 AM
kislinsk closed T27524: Should RenderingManager be used without singleton? as Resolved.
Oct 9 2020, 11:35 AM · Request for Discussion, MITK
nolden added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

PS: as an explanation, one theory is that the install-zip-package still references libraries from the build machine which causes the different behaviour

Oct 9 2020, 11:34 AM · Missing Info, DICOM, MITK
nolden added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

@nolden I tried the "make package" and it went through without any issues.
Should I upload the result here? Or is it just about the information that there are no error?
Could you please explain what you mean with "target machine"?

Oct 9 2020, 11:33 AM · Missing Info, DICOM, MITK
kislinsk added a parent task for T26451: DICOM plugin cannot parse DICOM directories in macOS installer: T27196: Rewrite packaging of MITK.
Oct 9 2020, 11:26 AM · MITK
kislinsk added subtasks for T27196: Rewrite packaging of MITK: T26451: DICOM plugin cannot parse DICOM directories in macOS installer, T27669: Dicom import issue with MITK binaries (package) and Ubuntu.
Oct 9 2020, 11:26 AM · Moved to git.dkfz.de, MITK, Cleared
kislinsk added a parent task for T27669: Dicom import issue with MITK binaries (package) and Ubuntu: T27196: Rewrite packaging of MITK.
Oct 9 2020, 11:26 AM · Missing Info, DICOM, MITK
kislinsk removed a project from T26451: DICOM plugin cannot parse DICOM directories in macOS installer: Request for Discussion.
Oct 9 2020, 11:25 AM · MITK
aguilera moved T27833: [shiny] Clicks on button "Privacy and data protection policy" replicates text from Backlog to Done on the webChallengeR board.
Oct 9 2020, 11:25 AM · webChallengeR
kislinsk added a subtask for T27196: Rewrite packaging of MITK: Unknown Object (Maniphest Task).
Oct 9 2020, 11:24 AM · Moved to git.dkfz.de, MITK, Cleared
kislinsk removed a project from T27800: [Segmentation] Live Wire crashes with 4D image and static segmentation: Request for Discussion.
Oct 9 2020, 11:14 AM · MITK (v2021.02)
kislinsk removed a project from T27721: [Segmentation] 2D Fast Marching crashes with 4D image and static segmentation: Request for Discussion.
Oct 9 2020, 11:13 AM · MITK (v2021.02)
eisenman triaged T27839: [shiny] Second report cannot be downloaded as High priority.
Oct 9 2020, 11:08 AM · webChallengeR
eisenman triaged T27838: [shiny] Add configuration option to indicate order of metric values as High priority.
Oct 9 2020, 11:03 AM · webChallengeR
kalali added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I looked again at the tests we have inside the checklist and I think it is still very long and many steps are redundant - because only the clicked tool-button changes and the underlying segmentation algorithm produces different results.
I think it is clearer and even better for testing a specific tool / algorithm, if we somehow separate the tests for different tools.
Also,

If necessary, I might need a helping hand because static/dynamic*single/double*2DTools/3DTools = many test cases

Oct 9 2020, 11:00 AM · MITK (v2022.04), Cleared
kislinsk added a revision to T27563: Help link (pressing F1) is partially broken: Unknown Object (Differential Revision).
Oct 9 2020, 10:58 AM · MITK (v2021.02)
k656s added a member for Kaapana (internal): m564f.
Oct 9 2020, 10:10 AM
kalali added a parent task for T27817: [Multilabel] Live Wire tool always assigns first label when being used with multiple labels: T27807: [MultiLabel Segmentation] Inspection of module and plugin.
Oct 9 2020, 10:02 AM · Cleared, MITK (v2021.02)
kalali added a subtask for T27807: [MultiLabel Segmentation] Inspection of module and plugin: T27817: [Multilabel] Live Wire tool always assigns first label when being used with multiple labels.
Oct 9 2020, 10:02 AM · Moved to git.dkfz.de, MITK (v2024.12)
eisenman triaged T27835: [shiny] Change order of ranking configuration as Low priority.
Oct 9 2020, 9:59 AM · webChallengeR
kislinsk claimed T27563: Help link (pressing F1) is partially broken.
Oct 9 2020, 9:56 AM · MITK (v2021.02)
kislinsk triaged T27834: [MITKDoc] Revise CEST views documentation as Low priority.
Oct 9 2020, 9:56 AM · Moved to git.dkfz.de, MITK (v2024.12)
eisenman triaged T27833: [shiny] Clicks on button "Privacy and data protection policy" replicates text as High priority.
Oct 9 2020, 9:40 AM · webChallengeR
eisenman updated subscribers of T27828: [shiny] Error message when wrong type in text field.

Another solution is to use a numeric input field that does not accept other characters.

Oct 9 2020, 9:30 AM · webChallengeR
floca added a parent task for T27817: [Multilabel] Live Wire tool always assigns first label when being used with multiple labels: Unknown Object (Maniphest Task).
Oct 9 2020, 9:21 AM · Cleared, MITK (v2021.02)
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Oct 9 2020, 9:16 AM · MITK (v2022.04), Cleared
kalali closed T27100: [MITKDoc] Revise DataManager Plugin Documentation as Resolved.
Oct 9 2020, 8:42 AM · Cleared, MITK (v2021.02)
kislinsk closed T25882: Rewrite dashboard script for CDash 2.6 as Resolved.
Oct 9 2020, 3:02 AM · CI, MITK (v2021.02), Restricted Project
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

Deleted branch bugfix/T25882-RewriteDashboardScript.

Oct 9 2020, 3:01 AM · CI, MITK (v2021.02), Restricted Project
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

Deleted branch feature/T25882-MITKOptions.

Oct 9 2020, 3:01 AM · CI, MITK (v2021.02), Restricted Project
kislinsk committed rMITK1eb820c49757: Merge branch 'feature/T25882-MITKOptions' into develop (authored by kislinsk).
Merge branch 'feature/T25882-MITKOptions' into develop
Oct 9 2020, 3:00 AM
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

Pushed new branch feature/T25882-MITKOptions.

Oct 9 2020, 2:59 AM · CI, MITK (v2021.02), Restricted Project

Oct 8 2020

kompan closed T27831: [MITKDoc]Add missing "the" in some view documentation page titles as Resolved.
Oct 8 2020, 4:42 PM · MITK (v2021.02)
kompan committed rMITK35f588e4562a: Add "The" to page titles. (authored by kompan).
Add "The" to page titles.
Oct 8 2020, 4:41 PM
kompan committed rMITK5319d6f244e4: Make view id naming consistent using "." instead of "_". (authored by kompan).
Make view id naming consistent using "." instead of "_".
Oct 8 2020, 4:41 PM
kompan committed rMITK3df8573035e1: Change gui_qt for IGT Tracking Automatic Measurement. (authored by kompan).
Change gui_qt for IGT Tracking Automatic Measurement.
Oct 8 2020, 4:41 PM
kompan committed rMITK0b70b3797713: Change gui_qt for pharmacokinetics_pet. (authored by kompan).
Change gui_qt for pharmacokinetics_pet.
Oct 8 2020, 4:41 PM
kompan committed rMITK9585b6279549: Change gui_qt for photoacoustics_imageprocessing. (authored by kompan).
Change gui_qt for photoacoustics_imageprocessing.
Oct 8 2020, 4:41 PM
kompan committed rMITK2343cff30049: Add "The" to page titles. (authored by kompan).
Add "The" to page titles.
Oct 8 2020, 4:41 PM
kalali closed T27096: [MITKDoc] Revise MultiLabel Segmentation Utilities Plugin Documentation as Resolved.

Open problems will be tackled in subtasks of T27807: [MultiLabel Segmentation] Inspection of module and plugin, e.g. T27809 and T27810.

Oct 8 2020, 3:47 PM · MITK (v2021.02)
kalali committed rMITK9988ae5bac9b: Rename multilabel segmentation documentation file and reference utilities page (authored by kalali).
Rename multilabel segmentation documentation file and reference utilities page
Oct 8 2020, 3:46 PM
kalali committed rMITK028a2733ca29: Revise MultiLabel Segmentation Utilities Plugin Documentation (authored by kalali).
Revise MultiLabel Segmentation Utilities Plugin Documentation
Oct 8 2020, 3:46 PM
kalali committed rMITK7e2a8474f87b: Fix spelling mistake and change order of operations (authored by kalali).
Fix spelling mistake and change order of operations
Oct 8 2020, 3:46 PM
kalali committed rMITK0e6dc95f8904: Modify section names, add documentation of "Convert to Multilabel" operation (authored by kalali).
Modify section names, add documentation of "Convert to Multilabel" operation
Oct 8 2020, 3:45 PM
kalali committed rMITKade3a7af5722: Update documentation images (authored by kalali).
Update documentation images
Oct 8 2020, 3:45 PM
kalali committed rMITK753a7c885905: Update documentation (authored by kalali).
Update documentation
Oct 8 2020, 3:45 PM
kalali committed rMITK9dc46e260b85: Add missing image (authored by kalali).
Add missing image
Oct 8 2020, 3:45 PM
kalali committed rMITKac64132d5453: Add documentation images (authored by kalali).
Add documentation images
Oct 8 2020, 3:45 PM
kalali committed rMITK8668a49caa13: Draft first revision (authored by kalali).
Draft first revision
Oct 8 2020, 3:45 PM
wiesenfa moved T27802: Revise signature of function testThenRank from In Progress to Done on the challengeR (v1.0) board.
Oct 8 2020, 1:20 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER96a5812ece30: fix respect alpha (authored by wiesenfa).
fix respect alpha
Oct 8 2020, 1:20 PM
wiesenfa added a comment to T27802: Revise signature of function testThenRank.

This was a tricky bug, thanks!
alpha is now respected, argument FUN is removed. significance ranking is considered an aggregation step, so testThenRank() is nothing else than aggregateThenRank(FUN="significance").
Note that testThenRank will pass all arguments to decision.challenge(), i.e. it will respect arguments:

Oct 8 2020, 1:15 PM · challengeR (v1.0)
wiesenfa moved T27494: Check which files are still relevant from In Progress to Backlog on the challengeR (v1.0) board.
Oct 8 2020, 12:36 PM · challengeR
wiesenfa moved T27802: Revise signature of function testThenRank from Backlog to In Progress on the challengeR (v1.0) board.
Oct 8 2020, 12:34 PM · challengeR (v1.0)
wiesenfa moved T27456: Extraction of task subset from (bootstrap) ranking does not raise an error for invalid task name from In Progress to Done on the challengeR (v1.0) board.
Oct 8 2020, 12:33 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER7b50eff1c116: subset error messages (authored by wiesenfa).
subset error messages
Oct 8 2020, 12:32 PM
wiesenfa committed rCHALLENGER356105ac93b4: fix test for invalid task name (authored by wiesenfa).
fix test for invalid task name
Oct 8 2020, 12:32 PM
wiesenfa committed rCHALLENGER4d4c7820d18f: adapt test for invalid task names (authored by wiesenfa).
adapt test for invalid task names
Oct 8 2020, 12:32 PM
wiesenfa committed rCHALLENGER85d2f7a263b1: error messages invalid task names (authored by wiesenfa).
error messages invalid task names
Oct 8 2020, 12:32 PM
wiesenfa moved T27456: Extraction of task subset from (bootstrap) ranking does not raise an error for invalid task name from Backlog to In Progress on the challengeR (v1.0) board.
Oct 8 2020, 12:16 PM · challengeR (v1.0)
floca committed rMITK2a51f8fa5688: Bugfix: Added a check for file existance to prevent tag scanning errors. (authored by floca).
Bugfix: Added a check for file existance to prevent tag scanning errors.
Oct 8 2020, 11:56 AM
floca committed rMITK0bebd83d6956: Added a check for file existance to prevent tag scanning. (authored by floca).
Added a check for file existance to prevent tag scanning.
Oct 8 2020, 11:56 AM
wiesenfa moved T27793: Plot titles are missing in some line plots from In Progress to Done on the challengeR (v1.0) board.
Oct 8 2020, 11:55 AM · challengeR (v1.0)
wiesenfa committed rCHALLENGER7ae1fb0d69e3: task title in line plot (authored by wiesenfa).
task title in line plot
Oct 8 2020, 11:55 AM
wiesenfa moved T27793: Plot titles are missing in some line plots from Backlog to In Progress on the challengeR (v1.0) board.
Oct 8 2020, 11:30 AM · challengeR (v1.0)
wiesenfa moved T27778: turn off networks from In Progress to Done on the challengeR (v1.0) board.
Oct 8 2020, 11:29 AM · challengeR (v1.0)
wiesenfa committed rCHALLENGERce25f3551296: outcomment networks (authored by wiesenfa).
outcomment networks
Oct 8 2020, 11:29 AM
wiesenfa moved T27778: turn off networks from Backlog to In Progress on the challengeR (v1.0) board.
Oct 8 2020, 11:25 AM · challengeR (v1.0)