- Queries
- All Stories
- Search
- Advanced Search
- Transactions
- Transaction Logs
All Stories
Feb 19 2024
Pushed new branch to rMITK MITK: bugfix/T30334-FixPlaneGeometryDataToSurfaceFilter.
Feb 18 2024
Live wire tool (and Lasso) is already reworked.
Feb 17 2024
Feb 15 2024
This fitting task was applied not to many cases, therefore AVID batch processing was not required and fitting was done in MITK using the formula parser.
Feb 12 2024
SegmentAnyBone is SAM with an extra attention pathway as well, pretrained on MRI dataset.
They have trained the visual transformer vit_t type model and released new pretrained weights. From code perspective, they have modified down SAM code to include attention map and packs with it in the repo.
Salient points:
Feb 11 2024
Is solved by the pixel value view.
Feb 10 2024
Deleted branch from rMITK MITK: bugfix/T30321-FixVTK.
Pushed new branch to rMITK MITK: bugfix/T30321-FixVTK.
VTK 9.3 has a build issue in debug mode with Visual Studio. It's a known issue but it is not yet fixed upstream.
Feb 9 2024
I also vote for 3.
The difference between my build tree version and the installed version is that the former is using the wayland or wayland-egl backend, while the latter is using the xcb backend. Forcing the build tree version to use xcb results in the same GLEW warnings, which is good, so I can now try to get rid of it.
Feb 8 2024
Code needs to be adapted to API changes, which cannot be done without domain knowledge.
Feb 7 2024
Pushed new branch to rMITK MITK: bugfix/T30321-Ubuntu_23.10_Compatibility.
While compiling VTK 9.3.0, I noticed the following warning which may be interesting:
Conclusion: still needs subtasks
- can the binary tag be removed?
- convert binary images easier into segmentations
- offer python utility package as a way to convert -> T29389
Conclusion: makes sense to do, will be tackled implicitly in the future.
Discussion: the listed parts can be removed + semantic relations can also be removed (in its current implementation state, because it would need to be reimplemented with property relation rules).
Has been clarified
Conclusion: In general it makes sense, but we would want to get rid of the "locked state" of the perspective. Needs further research if the locked state can be removed easily or be made more clearly visible, e.g. by a UI element.
Feb 6 2024
- To configure the MITK superbuild, I had to install libegl1-mesa-dev.
- To run the Qt online installer, I had to install libxcb-xinerama0.
Feb 5 2024
Feb 2 2024
The attempt of Qt to look for the wayland platform plugin can be disabled by adding export QT_QPA_PLATFORM=xcb to CMake/RunInstalledApp.sh, which is preferrable since we do not distribute the wayland platform plugin anyway.
Feb 1 2024
Deleted branch from rMITK MITK: release/T30315-2024-Week-05.
Pushed new branch to rMITK MITK: release/T30315-2024-Week-05.
Reason: see my comment above.
Thank you for looking into that. Let's discuss it further in the next meeting, but I think we should try to get it available in the next release.
For Boundingboxes, I would align with the Bounding Box interactions we have to build up at some point for generating detection labels.
Jan 30 2024
MedSAM is same old SAM, pretrained using medical image-based dataset.
They have trained the visual transformer vit_b type model and released new pretrained weights. So fundamentally, there is no change in architecture. However, from code perspective, they have modified/trimmed down SAM code to their application and packs with it in the repo.
Salient points:
Jan 29 2024
Pushed new branch to rMITK MITK: feature/T30294-Remove_LabelSet_class.
Jan 26 2024
Ok, I have updated the task description.
I think the slicer plugin is not so interesting, but the MedSAM branch it used LiteMedSAM https://github.com/bowang-lab/MedSAM/blob/LiteMedSAM/README.md.
Jan 25 2024
Jan 24 2024
Jan 23 2024
Pushed new branch to rMITK MITK: feature/T30152-MoveIGTIntoExtension.
Jan 22 2024
Pushed new branch to rMITK MITK: feature/T30171-python-wrapping-new.