Page MenuHomePhabricator

petersej (Jens Petersen)
User

Projects (10)

User Details

User Since
Aug 1 2016, 12:10 PM (175 w, 3 d)

Recent Activity

Query Overheated

This query took too long, so only some results are shown. Learn More

Thu, Nov 14

petersej triaged T26814: PytorchExperiment resuming doesn't work as expected as High priority.
Thu, Nov 14, 3:51 PM · trixi

Sep 27 2019

petersej added a parent task for T24694: Make plots in experiment view removable: T25582: Rewrite trixi in React.
Sep 27 2019, 2:42 PM · trixi
petersej added a parent task for T25300: Collapse/Expand sub configs tables in experiment browser comparison (and only show sub keys): T25582: Rewrite trixi in React.
Sep 27 2019, 2:42 PM · trixi
petersej added a parent task for T24831: Load javascript libraries via npm: T25582: Rewrite trixi in React.
Sep 27 2019, 2:42 PM · trixi, Restricted Project
petersej added subtasks for T25582: Rewrite trixi in React: T25300: Collapse/Expand sub configs tables in experiment browser comparison (and only show sub keys), T24831: Load javascript libraries via npm, T24694: Make plots in experiment view removable.
Sep 27 2019, 2:42 PM · Restricted Project, trixi
petersej added a comment to T24694: Make plots in experiment view removable.

Option for browser rewrite T25582

Sep 27 2019, 2:40 PM · trixi
petersej added a comment to T24831: Load javascript libraries via npm.

Do this on first startup of browser/implement module check in browser?

Sep 27 2019, 2:39 PM · trixi, Restricted Project
petersej added a comment to T25300: Collapse/Expand sub configs tables in experiment browser comparison (and only show sub keys).

Do this for browser rewrite T25582

Sep 27 2019, 2:37 PM · trixi
petersej added a subtask for T25582: Rewrite trixi in React: Unknown Object (Maniphest Task).
Sep 27 2019, 2:23 PM · Restricted Project, trixi

Jul 12 2019

petersej added a member for Deep Learning: m167k.
Jul 12 2019, 2:52 PM

Jul 11 2019

petersej added a member for trixi: m167k.
Jul 11 2019, 5:52 PM

Apr 30 2019

petersej added a watcher for petersej: petersej.
Apr 30 2019, 5:56 PM

Apr 26 2019

petersej closed T23470: Markdown for Python Example Project as Resolved.

No longer relevant

Apr 26 2019, 11:44 AM · MITK
petersej closed T26183: Joint running and testing of experiments as Resolved.

There is a setup option for .run_test, just set that to False

Apr 26 2019, 11:37 AM · trixi

Mar 26 2019

petersej triaged T26184: Check difference config and write tests as Normal priority.
Mar 26 2019, 1:44 PM · trixi
petersej triaged T26183: Joint running and testing of experiments as High priority.
Mar 26 2019, 1:42 PM · trixi

Jan 24 2019

petersej triaged T24599: Problem with numpy dataset and json serialization in PyTorchExperiment class as Normal priority.

Does PyTorch offer a way to serialize DataLoader objects? If so, we could extend ModuleMultiTypeEncoder/Decoder in util.util

Jan 24 2019, 11:31 AM · trixi
petersej triaged T24633: Save Visdom environment in vislogger as Wishlist priority.
Jan 24 2019, 11:28 AM · trixi
petersej triaged T24634: Clear all visdom environments as Low priority.
Jan 24 2019, 11:28 AM · trixi
petersej closed T24722: Create some common pytorch functions file (e.g. pytorch helpers) as Resolved.

util/pytorchutils

Jan 24 2019, 11:26 AM · trixi
petersej triaged T25582: Rewrite trixi in React as Wishlist priority.
Jan 24 2019, 11:25 AM · Restricted Project, trixi

Jan 18 2019

petersej closed T25852: CLI exposure when resuming experiments as Resolved.

Already works :D

Jan 18 2019, 10:38 AM · Restricted Project, trixi

Jan 17 2019

petersej added a project to T25852: CLI exposure when resuming experiments: Restricted Project.
Jan 17 2019, 11:23 AM · Restricted Project, trixi
petersej triaged T25852: CLI exposure when resuming experiments as Normal priority.
Jan 17 2019, 11:22 AM · Restricted Project, trixi

Oct 2 2018

petersej added a member for MIA: full.
Oct 2 2018, 9:17 AM

Sep 14 2018

petersej added a member for BVM: thomass.
Sep 14 2018, 4:49 PM

Aug 29 2018

petersej triaged T25314: Clean threading for trixi as High priority.
Aug 29 2018, 10:48 AM · Restricted Project, trixi
petersej added a comment to T24634: Clear all visdom environments.

Please provide more info. Do you mean a utility function that clears all environments? Why do we need that?

Aug 29 2018, 10:31 AM · trixi
petersej closed T24865: Renaming and Starring for trixi as Resolved.
Aug 29 2018, 10:29 AM · trixi
petersej added a comment to T25059: Make tag and label consistent in counter and show_value etc.

@zimmerer please close if this is resolved to your satisfaction

Aug 29 2018, 10:29 AM · trixi
petersej closed T24695: How to handle "big data" in experiment viewer as Resolved.

Current solution works alright for now, closing

Aug 29 2018, 10:27 AM · trixi

Aug 28 2018

petersej triaged T25309: Unify API for Numpy- & PytorchPlotFileLogger as High priority.
Aug 28 2018, 10:05 AM · Restricted Project, trixi

Jun 13 2018

petersej moved T24865: Renaming and Starring for trixi from Resolved to In Progress on the trixi board.
Jun 13 2018, 3:01 PM · trixi
petersej closed T24674: Show log files in experiment browser as Resolved.
Jun 13 2018, 3:00 PM · trixi
petersej closed T24657: Add state to experiment log (and experiment browser) as Resolved.
Jun 13 2018, 3:00 PM · trixi
petersej closed T24616: Vislogger fix/inspect error log as Resolved.
Jun 13 2018, 2:59 PM · trixi
petersej placed T20047: Single method for status bar update up for grabs.
Jun 13 2018, 2:48 PM · MITK
petersej placed T19724: Feature processor for classification up for grabs.
Jun 13 2018, 2:48 PM · Bugzilla, MITK
petersej placed T19011: DICOM Browser: Scanning empty directory causes Import dialog to stay open forever up for grabs.
Jun 13 2018, 2:48 PM · MITK, Bugzilla
petersej placed T19600: Active Learning Module & Plugin up for grabs.
Jun 13 2018, 2:47 PM · Bugzilla, MITK
petersej placed T19310: Add bulk retrieval to DICOM plugin up for grabs.
Jun 13 2018, 2:47 PM · Bugzilla, MITK

Apr 24 2018

petersej closed T24693: Hierachical Config as Resolved.
Apr 24 2018, 5:02 PM · trixi
petersej moved T24693: Hierachical Config from Backlog to In Progress on the trixi board.
Apr 24 2018, 12:52 PM · trixi

Apr 21 2018

petersej triaged T24695: How to handle "big data" in experiment viewer as Normal priority.
Apr 21 2018, 7:08 PM · trixi
petersej triaged T24694: Make plots in experiment view removable as Wishlist priority.
Apr 21 2018, 7:05 PM · trixi

Apr 20 2018

petersej triaged T24693: Hierachical Config as Wishlist priority.
Apr 20 2018, 3:22 PM · trixi

Apr 11 2018

petersej closed T24587: NumpyVisdomLogger crashes with segmentation fault as Resolved.
Apr 11 2018, 11:12 AM · trixi
petersej added a comment to T24587: NumpyVisdomLogger crashes with segmentation fault.

I did two things that apparently solved the problem (>50k episodes without issue). 1. Move matplotlib.use("agg") to the __init__.py, because I was actually using Qt5Agg. This is a necessary fix regardless of this particular problem. 2. I "un-threaded" the saving of figures. This is likely the fix, but I still don't know why... Will mark as resolved regardless.

Apr 11 2018, 11:12 AM · trixi
petersej moved T24587: NumpyVisdomLogger crashes with segmentation fault from Backlog to In Progress on the trixi board.
Apr 11 2018, 10:59 AM · trixi

Apr 8 2018

petersej added a comment to T24587: NumpyVisdomLogger crashes with segmentation fault.

Idea: Currently we're making .savefig threaded, maybe creating a little helper that does .savefig and then .clear in a thread could help?

Apr 8 2018, 5:18 PM · trixi
petersej added a comment to T24587: NumpyVisdomLogger crashes with segmentation fault.

Running python -m pdb myscript.py now gave out the following RuntimeWarning:

Apr 8 2018, 5:09 PM · trixi
petersej added a comment to T24587: NumpyVisdomLogger crashes with segmentation fault.

I can confirm that the segfault is in fact the problem. Running without visdom logging still results in segfault, but much later (sample size 1, ca. 13000 episodes). The EOFError is then only the result of the dead sender. Random idea from the internet: Stack memory limit too low? Mine is currently at 8192MB (ulimit -s)

Apr 8 2018, 1:59 PM · trixi

Apr 6 2018

petersej triaged T24587: NumpyVisdomLogger crashes with segmentation fault as High priority.
Apr 6 2018, 1:52 PM · trixi
petersej triaged T24586: NumpyPlotFileLogger savefig with IndexError as Normal priority.
Apr 6 2018, 1:40 PM · trixi
petersej added a watcher for trixi: petersej.
Apr 6 2018, 1:29 PM

Mar 27 2018

petersej added a parent task for T23174: Add Example and readme to vislogger package: Unknown Object (Maniphest Task).
Mar 27 2018, 4:50 PM · trixi
petersej added a comment to T23174: Add Example and readme to vislogger package.

Simple README not sufficient, Jupyter notebook better alternative.

Mar 27 2018, 3:56 PM · trixi
petersej reassigned T23174: Add Example and readme to vislogger package from isensee to koehlerg.
Mar 27 2018, 3:55 PM · trixi

Jan 18 2018

petersej closed T23171: Make vislogger package as Resolved.
Jan 18 2018, 5:25 PM · Deep Learning
petersej closed T23171: Make vislogger package, a subtask of T23156: Visdom visualization package, as Resolved.
Jan 18 2018, 5:25 PM · Restricted Project, Deep Learning
petersej added a comment to T23155: Provide a Python Style Guide.

More or less ready, waiting for new wiki

Jan 18 2018, 5:24 PM · Deep Learning, MITK

Nov 6 2017

petersej closed T23634: Batchgenerators API improvements as Resolved.
Nov 6 2017, 11:43 AM · Deep Learning

Nov 2 2017

petersej created T23634: Batchgenerators API improvements.
Nov 2 2017, 5:58 PM · Deep Learning

Sep 29 2017

petersej created T23470: Markdown for Python Example Project.
Sep 29 2017, 2:59 PM · MITK

Aug 9 2017

petersej reassigned T23156: Visdom visualization package from petersej to zimmerer.
Aug 9 2017, 11:27 AM · Restricted Project, Deep Learning

Aug 3 2017

petersej added a project to T23156: Visdom visualization package: Restricted Project.
Aug 3 2017, 3:08 PM · Restricted Project, Deep Learning
petersej added a project to T23155: Provide a Python Style Guide: Deep Learning.
Aug 3 2017, 3:07 PM · Deep Learning, MITK
petersej created T23156: Visdom visualization package.
Aug 3 2017, 3:00 PM · Restricted Project, Deep Learning
petersej created T23155: Provide a Python Style Guide.
Aug 3 2017, 2:35 PM · Deep Learning, MITK

Apr 4 2017

petersej committed rMITK67a391cd0871: Logging works (authored by petersej).
Logging works
Apr 4 2017, 9:52 AM

Mar 30 2017

petersej committed rMITK29003b990cfd: Implement interaction logger (authored by petersej).
Implement interaction logger
Mar 30 2017, 7:01 PM
petersej added a comment to T19600: Active Learning Module & Plugin.

Pushed new branch T19600-ActiveLearning-Backup.

Mar 30 2017, 11:05 AM · Bugzilla, MITK
petersej committed rMITK5343ea1db706: Remove presets for now (authored by petersej).
Remove presets for now
Mar 30 2017, 11:04 AM
petersej committed rMITKdf2a285ec489: Add missing declaration (authored by petersej).
Add missing declaration
Mar 30 2017, 11:04 AM
petersej committed rMITK90bb124781c4: Merge branch 'T19600-ActiveLearning' into T19600-ActiveLearning-new-master (authored by petersej).
Merge branch 'T19600-ActiveLearning' into T19600-ActiveLearning-new-master
Mar 30 2017, 11:04 AM
petersej added a comment to T19600: Active Learning Module & Plugin.

Pushed new branch T19600-ActiveLearning-new-master.

Mar 30 2017, 11:04 AM · Bugzilla, MITK

Jan 20 2017

petersej committed rMITKc9d736a2ff7d: Merge branch 'T2662-darkStyle2017' of https://phabricator.mitk. (authored by petersej).
Merge branch 'T2662-darkStyle2017' of https://phabricator.mitk.
Jan 20 2017, 5:26 PM
petersej committed rMITK99fa0dacfc66: Start implementing dark icon theme (authored by petersej).
Start implementing dark icon theme
Jan 20 2017, 5:26 PM

Nov 11 2016

petersej committed rMITKca218a062650: Region grower no longer overwrites locked labels (authored by petersej).
Region grower no longer overwrites locked labels
Nov 11 2016, 3:12 PM
petersej committed rMITKce5325553b8e: Fix paint and wipe tools (authored by petersej).
Fix paint and wipe tools
Nov 11 2016, 2:38 PM
petersej committed rMITK38840f59435f: Fix subtract and correction tools (authored by petersej).
Fix subtract and correction tools
Nov 11 2016, 2:19 PM
petersej added a comment to T22098: Multilabel segmentation tools not working correctly.

Pushed new branch T22098-Multilabel-Segmentation-Tools.

Nov 11 2016, 2:19 PM · MITK (2016-11)
petersej created T22098: Multilabel segmentation tools not working correctly.
Nov 11 2016, 2:13 PM · MITK (2016-11)
petersej created T22088: Synchronize node color with color of active label in LabelSetImage.
Nov 11 2016, 9:13 AM · MITK (2016-11)

Nov 3 2016

petersej created T20223: MITK does not load RGB and RGBA test images.
Nov 3 2016, 10:09 AM · MITK (2016-11)

Oct 28 2016

petersej committed rMITKafde4cca8a70: Implement status bar method to display image info (authored by petersej).
Implement status bar method to display image info
Oct 28 2016, 3:02 PM
petersej added a revision to T20047: Single method for status bar update: Unknown Object (Differential Revision).
Oct 28 2016, 1:52 PM · MITK