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Recent Activity

Sep 16 2024

kislinsk closed T28852: [DICOM] support temporal position and encoding for MR images, a subtask of T28089: [CEST] Error loading custom data due to alleged spacing of 0, as Resolved.
Sep 16 2024, 1:49 PM · Auto-closed, Missing Info, Restricted Project, MITK
kislinsk closed T30310: Add new views, e.g. for Seg Task List or Perfusion as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Sep 16 2024, 1:49 PM · Moved to git.dkfz.de, Missing Info, MITK
kislinsk closed T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG, a subtask of T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM , as Resolved.
Sep 16 2024, 1:49 PM · Auto-closed, Missing Info, MITK
kislinsk closed T26972: Dialog and plugin layout seems to be not shown correctly on laptops as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Sep 16 2024, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info
kislinsk closed T28785: Levelwindow UX proposals/comments as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Sep 16 2024, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist, Missing Info, Request for Discussion
kislinsk closed T29204: [SEG] Rework properties of Label class + add instance information, a subtask of T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number, as Resolved.
Sep 16 2024, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Request for Discussion
kislinsk closed T29582: [Segmentation] Error when pressing "Undo" after undoing all fill changes as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Sep 16 2024, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Checklist
kislinsk closed T29639: [Registration] Mapping crashes when super-sampling is activated as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Sep 16 2024, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info
kislinsk closed T30158: [DCM][SEG] Check why unittests did not detect breaking support of DCM Seg and fix the (unit) test, a subtask of T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number, as Resolved.
Sep 16 2024, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Request for Discussion
kislinsk closed T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Sep 16 2024, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Request for Discussion

Jun 17 2024

kislinsk closed T30448: MITK snapshots/2024-05-02 Workbench not restarting as Invalid.

I close this task as invalid. We were not able to reproduce this issue at all and we never heard of if by anyone else. Feel free to reopen the task if there's a reliable recipe for reproduction.

Jun 17 2024, 2:42 PM · MITK (v2024.12), Missing Info
kislinsk triaged T30310: Add new views, e.g. for Seg Task List or Perfusion as Wishlist priority.
Jun 17 2024, 2:39 PM · Moved to git.dkfz.de, Missing Info, MITK
kislinsk edited projects for T29640: Verboseness in MatchPoint Algorithm Control, added: MITK (v2024.12); removed MITK (v2024.06).
Jun 17 2024, 2:33 PM · MITK (v2024.12), Missing Info
kislinsk edited projects for T26972: Dialog and plugin layout seems to be not shown correctly on laptops, added: MITK (v2024.12); removed MITK (v2024.06).
Jun 17 2024, 2:33 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info
kislinsk edited projects for T28785: Levelwindow UX proposals/comments, added: MITK (v2024.12); removed MITK (v2024.06).
Jun 17 2024, 2:33 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist, Missing Info, Request for Discussion
kislinsk edited projects for T29582: [Segmentation] Error when pressing "Undo" after undoing all fill changes, added: MITK (v2024.12); removed MITK (v2024.06).
Jun 17 2024, 2:33 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Checklist
kislinsk edited projects for T29639: [Registration] Mapping crashes when super-sampling is activated, added: MITK (v2024.12); removed MITK (v2024.06).
Jun 17 2024, 2:33 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info
kislinsk edited projects for T30448: MITK snapshots/2024-05-02 Workbench not restarting, added: MITK (v2024.12); removed MITK (v2024.06).
Jun 17 2024, 2:33 PM · MITK (v2024.12), Missing Info
kislinsk edited projects for T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number, added: MITK (v2024.12); removed MITK (v2024.06).
Jun 17 2024, 2:33 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Request for Discussion

Jun 4 2024

kompan added a comment to T30448: MITK snapshots/2024-05-02 Workbench not restarting.
  • Windows Edition: Windows 11 Home
  • MITK Blocked /Scanned: When starting the MitkWorkbench.bat file the Windows system does not let it run intially. A window appears "Windowps protects your PC- Microsoft Defender SmartScreen prevented an ungecognised app from starting- Running this app might put your PC at risk." Then the option "Run anyway" was selected.
  • Installation location: in C drive ( Desktop)
  • Exact terminal output: Command window with a large amount of text appears when the software runs; otherwise, only the first paragraph ("C:\Users\....\bin\MitkWokbench.exe") appears in the command screen.
Jun 4 2024, 9:13 AM · MITK (v2024.12), Missing Info

May 21 2024

kislinsk edited projects for T30448: MITK snapshots/2024-05-02 Workbench not restarting, added: Missing Info, MITK (v2024.06); removed MITK.

As no such issue is already known to us there won't be any difference in the upcoming release. A little bit more information would be useful here. What version of Windows? Blocked/scanned by anti malware software/virus scanner? Where did they install MITK? User rights? What's the exact terminal output? What about the command-line apps?

May 21 2024, 3:04 PM · MITK (v2024.12), Missing Info

May 14 2024

floca closed T30421: [SEG] Undo/Redo problems with Fill/Erase tool reported as Wontfix.

Undo/redo is a known problem, covered by other tickets.
The crash propblem I was not able to reproduce.

May 14 2024, 9:31 AM · Missing Info, Checklist, MITK (v2024.06)

May 9 2024

floca moved T30421: [SEG] Undo/Redo problems with Fill/Erase tool reported from Backlog to Cycle on the MITK (v2024.06) board.
May 9 2024, 10:53 AM · Missing Info, Checklist, MITK (v2024.06)

May 7 2024

kislinsk assigned T30421: [SEG] Undo/Redo problems with Fill/Erase tool reported to floca.
May 7 2024, 9:58 PM · Missing Info, Checklist, MITK (v2024.06)
floca added a comment to T30412: [Statistics] Planar figure cannot be set as ROI for askew images.

Hm, yes, As we also define a reference image like in the segmentation view. I think it is the most pragmatic and consistent approach to introduce the same/simelar behavior:
warn users if the rendering is not alligned with the reference image and only allow making planar figures if the geometry was reinit.
I am not sure if reinit as soon as the click on a planar figure button wouldn't be irritating.

May 7 2024, 3:45 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca closed T30420: [SEG] Fill/Erase tool does not work due to geometry error, a subtask of T30421: [SEG] Undo/Redo problems with Fill/Erase tool reported, as Resolved.
May 7 2024, 3:19 PM · Missing Info, Checklist, MITK (v2024.06)
kislinsk added a comment to T30412: [Statistics] Planar figure cannot be set as ROI for askew images.

With a reinit it works but boy is this unintuitive for users. Like when starting the Workbench and opening brain.nrrd, there's no indication that a reinit is necessary (and what a reinit is and where to find it is another story). You can draw a planar figure on it just fine.

May 7 2024, 3:00 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca moved T30412: [Statistics] Planar figure cannot be set as ROI for askew images from Backlog to Cycle on the MITK (v2024.06) board.
May 7 2024, 2:50 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca added a project to T30412: [Statistics] Planar figure cannot be set as ROI for askew images: Missing Info.

I cannot reproduce the "bug".
But it is not realy a bug but correct. If you do not reinit on brain.nrrd before making the planar figure, it is tilted. Therefore no statistics can be computed.

May 7 2024, 2:49 PM · Moved to git.dkfz.de, MITK (v2024.12)

May 6 2024

floca added a comment to T30421: [SEG] Undo/Redo problems with Fill/Erase tool reported.

Have to check if T30420 is fixed.

May 6 2024, 9:08 AM · Missing Info, Checklist, MITK (v2024.06)
floca added a subtask for T30421: [SEG] Undo/Redo problems with Fill/Erase tool reported: T30420: [SEG] Fill/Erase tool does not work due to geometry error.
May 6 2024, 9:08 AM · Missing Info, Checklist, MITK (v2024.06)
floca created T30421: [SEG] Undo/Redo problems with Fill/Erase tool reported.
May 6 2024, 9:08 AM · Missing Info, Checklist, MITK (v2024.06)

Apr 30 2024

floca added a project to T29582: [Segmentation] Error when pressing "Undo" after undoing all fill changes: Missing Info.
Apr 30 2024, 11:15 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Checklist

Apr 19 2024

floca closed T29416: Segmentation utilities can only handle unsigned char and unsigned short, no other types as Resolved.

Resolved with T30390

Apr 19 2024, 9:18 AM · MITK (v2024.06), Missing Info

Apr 18 2024

floca closed T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations as Resolved.
Apr 18 2024, 4:35 PM · MITK (v2024.06), Missing Info

Apr 3 2024

floca edited projects for T29526: [Segmentation] Workbench crashes when closing render window part with active tool, added: Missing Info; removed Request for Discussion.

does it still happen?

Apr 3 2024, 11:19 AM · MITK (v2024.06)

Apr 2 2024

floca claimed T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations.
Apr 2 2024, 7:06 PM · MITK (v2024.06), Missing Info

Feb 15 2024

kompan closed T29620: Check if GenericFitMiniApp supports the needed model as Resolved.

This fitting task was applied not to many cases, therefore AVID batch processing was not required and fitting was done in MITK using the formula parser.

Feb 15 2024, 10:24 AM · Missing Info, MITK, Restricted Project, Restricted Project

Feb 7 2024

s434n added a comment to T30310: Add new views, e.g. for Seg Task List or Perfusion.

Conclusion: In general it makes sense, but we would want to get rid of the "locked state" of the perspective. Needs further research if the locked state can be removed easily or be made more clearly visible, e.g. by a UI element.

Feb 7 2024, 11:22 AM · Moved to git.dkfz.de, Missing Info, MITK
s434n edited projects for T30310: Add new views, e.g. for Seg Task List or Perfusion, added: Missing Info; removed Request for Discussion.
Feb 7 2024, 11:19 AM · Moved to git.dkfz.de, Missing Info, MITK

Jan 19 2024

floca updated the task description for T30309: [SEG] Last label of label preset is sometimes not stored.
Jan 19 2024, 10:09 AM · MITK (v2024.06)

Jan 18 2024

floca edited projects for T30309: [SEG] Last label of label preset is sometimes not stored, added: MITK, Missing Info; removed MITK (v2024.06).
Jan 18 2024, 5:32 PM · MITK (v2024.06)

Dec 5 2023

kislinsk closed T27570: US DICOM images are read as 3D volume as Wontfix.

Hi there! 🙂

Dec 5 2023, 10:45 AM · Auto-closed, Missing Info, Restricted Project, MITK
kislinsk closed T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM as Wontfix.

Hi there! 🙂

Dec 5 2023, 10:45 AM · Auto-closed, Missing Info, MITK
kislinsk closed T29433: MITK Workbench Persistent Crash as Wontfix.

Hi there! 🙂

Dec 5 2023, 10:45 AM · Auto-closed, Missing Info, MITK
kislinsk edited projects for T29416: Segmentation utilities can only handle unsigned char and unsigned short, no other types, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Missing Info
kislinsk edited projects for T29639: [Registration] Mapping crashes when super-sampling is activated, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info
kislinsk edited projects for T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Missing Info
kislinsk edited projects for T26972: Dialog and plugin layout seems to be not shown correctly on laptops, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info
kislinsk edited projects for T28785: Levelwindow UX proposals/comments, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · Moved to git.dkfz.de, MITK (v2024.12), Checklist, Missing Info, Request for Discussion