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Recent Activity

Yesterday

floca closed T29416: Segmentation utilities can only handle unsigned char and unsigned short, no other types as Resolved.

Resolved with T30390

Fri, Apr 19, 9:18 AM · MITK (v2024.06), Missing Info

Thu, Apr 18

floca closed T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations as Resolved.
Thu, Apr 18, 4:35 PM · MITK (v2024.06), Missing Info

Wed, Apr 3

floca edited projects for T29526: [Segmentation] Workbench crashes when closing render window part with active tool, added: Missing Info; removed Request for Discussion.

does it still happen?

Wed, Apr 3, 11:19 AM · MITK (v2024.06)

Tue, Apr 2

floca claimed T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations.
Tue, Apr 2, 7:06 PM · MITK (v2024.06), Missing Info

Feb 15 2024

kompan closed T29620: Check if GenericFitMiniApp supports the needed model as Resolved.

This fitting task was applied not to many cases, therefore AVID batch processing was not required and fitting was done in MITK using the formula parser.

Feb 15 2024, 10:24 AM · Missing Info, MITK, Restricted Project, Restricted Project

Feb 7 2024

s434n added a comment to T30310: Add new views, e.g. for Seg Task List or Perfusion.

Conclusion: In general it makes sense, but we would want to get rid of the "locked state" of the perspective. Needs further research if the locked state can be removed easily or be made more clearly visible, e.g. by a UI element.

Feb 7 2024, 11:22 AM · Missing Info, MITK
s434n edited projects for T30310: Add new views, e.g. for Seg Task List or Perfusion, added: Missing Info; removed Request for Discussion.
Feb 7 2024, 11:19 AM · Missing Info, MITK

Jan 19 2024

floca updated the task description for T30309: [SEG] Last label of label preset is sometimes not stored.
Jan 19 2024, 10:09 AM · MITK (v2024.06)

Jan 18 2024

floca edited projects for T30309: [SEG] Last label of label preset is sometimes not stored, added: MITK, Missing Info; removed MITK (v2024.06).
Jan 18 2024, 5:32 PM · MITK (v2024.06)

Dec 5 2023

kislinsk closed T27570: US DICOM images are read as 3D volume as Wontfix.

Hi there! 🙂

Dec 5 2023, 10:45 AM · Auto-closed, Missing Info, Restricted Project, MITK
kislinsk closed T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM as Wontfix.

Hi there! 🙂

Dec 5 2023, 10:45 AM · Auto-closed, Missing Info, MITK
kislinsk closed T29433: MITK Workbench Persistent Crash as Wontfix.

Hi there! 🙂

Dec 5 2023, 10:45 AM · Auto-closed, Missing Info, MITK
kislinsk edited projects for T29416: Segmentation utilities can only handle unsigned char and unsigned short, no other types, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Missing Info
kislinsk edited projects for T29639: [Registration] Mapping crashes when super-sampling is activated, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Missing Info
kislinsk edited projects for T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Missing Info
kislinsk edited projects for T26972: Dialog and plugin layout seems to be not shown correctly on laptops, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Missing Info
kislinsk edited projects for T28785: Levelwindow UX proposals/comments, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist, Missing Info, Request for Discussion
kislinsk edited projects for T29640: Verboseness in MatchPoint Algorithm Control, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Missing Info
kislinsk edited projects for T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Missing Info, Request for Discussion

Nov 24 2023

floca triaged T29640: Verboseness in MatchPoint Algorithm Control as Low priority.
Nov 24 2023, 2:46 PM · MITK (v2024.06), Missing Info

Oct 11 2023

floca added a project to T29639: [Registration] Mapping crashes when super-sampling is activated: Missing Info.

Not clear when and how it happens. Need to narrow it down more.

Oct 11 2023, 11:57 AM · MITK (v2024.06), Missing Info

Sep 7 2023

floca added a comment to T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number.

offer the feature to take an instance UID that is an int as the pixel value.

Not sure if I understand it correctly, but ... DICOM UID cannot have int as the value - this would violate VR constraints.

Sep 7 2023, 5:40 PM · MITK (v2024.06), Missing Info, Request for Discussion
fedorov added a comment to T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number.

offer the feature to take an instance UID that is an int as the pixel value.

Sep 7 2023, 5:19 PM · MITK (v2024.06), Missing Info, Request for Discussion
floca added a comment to T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number.

T29204 should be done before as we need to store the information in an appropriate way. The most important thing is that we have then a property to store the instance UID. The default UID is the pixelvalue if not overwritten by the user or another configuration. Regarding the persistance of the pixel value I see two option:
a) Leave with the fact (and document it) that DICOM Seg is not "loss less" regarding the pixel value. So after saving to and loading from DICOM Seg your label will have the same (class) name and instance UID but might have a different pixel value.
b) offer the feature to take an instance UID that is an int as the pixel value. But this is only possible if we assure in our UI that you cannot use/change into an instance UID in a Segmentation that is alrready used there by another label.
Currently I would lean to a) and generate a new ticket for b) and see if we need it in the future.

Sep 7 2023, 12:37 PM · MITK (v2024.06), Missing Info, Request for Discussion
floca added a subtask for T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number: T29204: [SEG] Rework properties of Label class + add instance information.
Sep 7 2023, 12:29 PM · MITK (v2024.06), Missing Info, Request for Discussion
floca closed T30161: [DCM][SEG] First label data gets lost if multilables are stored as DCM Seg as Resolved.
Sep 7 2023, 12:18 PM · Missing Info, MITK (v2023.12)
floca closed T30161: [DCM][SEG] First label data gets lost if multilables are stored as DCM Seg, a subtask of T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number, as Resolved.
Sep 7 2023, 12:18 PM · MITK (v2024.06), Missing Info, Request for Discussion

Aug 4 2023

holzwart added a comment to T29640: Verboseness in MatchPoint Algorithm Control.

MITK v2022.10

Aug 4 2023, 3:47 PM · MITK (v2024.06), Missing Info

Aug 1 2023

floca added a project to T29640: Verboseness in MatchPoint Algorithm Control: Missing Info.
Aug 1 2023, 12:09 PM · MITK (v2024.06), Missing Info

Jul 13 2023

floca triaged T30161: [DCM][SEG] First label data gets lost if multilables are stored as DCM Seg as Unbreak Now! priority.
Jul 13 2023, 3:37 PM · Missing Info, MITK (v2023.12)

Jul 11 2023

fedorov added a comment to T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number.

Sounds good Ralf - happy to help!

Jul 11 2023, 8:18 PM · MITK (v2024.06), Missing Info, Request for Discussion
floca raised the priority of T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number from High to Unbreak Now!.

@fedorov Thank you for your quick reply and verification for my assumption (I hoped, that I might have overlooked some broader interpretablility...)

Jul 11 2023, 7:51 PM · MITK (v2024.06), Missing Info, Request for Discussion
fedorov added a comment to T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number.

" increase monotonically by 1" could be interpreted as "no holes allowed". We should clarify if this is the case.

Jul 11 2023, 5:37 PM · MITK (v2024.06), Missing Info, Request for Discussion
floca added a comment to T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number.
Jul 11 2023, 10:53 AM · MITK (v2024.06), Missing Info, Request for Discussion
floca triaged T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number as High priority.
Jul 11 2023, 9:06 AM · MITK (v2024.06), Missing Info, Request for Discussion

Jul 4 2023

floca moved T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:12 PM · MITK (v2024.06), Missing Info

Jun 14 2023

kompan added a comment to T29620: Check if GenericFitMiniApp supports the needed model.

The formula for the 23Na-MR data analysis is:

Jun 14 2023, 9:07 AM · Missing Info, MITK, Restricted Project, Restricted Project

Jun 13 2023

floca added a comment to T29620: Check if GenericFitMiniApp supports the needed model.

What is the status here?

Jun 13 2023, 10:59 AM · Missing Info, MITK, Restricted Project, Restricted Project

May 24 2023

floca added a project to T29620: Check if GenericFitMiniApp supports the needed model: Missing Info.

please ask tanja before I say something wrong.

May 24 2023, 7:31 PM · Missing Info, MITK, Restricted Project, Restricted Project

May 19 2023

floca added a comment to T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview.

🙏

May 19 2023, 9:08 AM · Missing Info, MITK
a178n closed T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview as Resolved.

Tested on the latest MITK 2023.04 release installer for Windows 10.
Problem doesn't exist anymore. Fixed.

May 19 2023, 8:59 AM · Missing Info, MITK

May 17 2023

kislinsk removed a project from T27570: US DICOM images are read as 3D volume: Auto-closed.
May 17 2023, 6:00 PM · Auto-closed, Missing Info, Restricted Project, MITK
kislinsk removed a project from T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview: Auto-closed.
May 17 2023, 6:00 PM · Missing Info, MITK
floca reopened T27570: US DICOM images are read as 3D volume as "Open".
May 17 2023, 5:03 PM · Auto-closed, Missing Info, Restricted Project, MITK
floca reopened T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview as "Open".
May 17 2023, 4:40 PM · Missing Info, MITK
floca added a comment to T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview.

@a178n Could you verify if the problem still exist or if it is fixed?

May 17 2023, 4:38 PM · Missing Info, MITK
kislinsk moved T29416: Segmentation utilities can only handle unsigned char and unsigned short, no other types from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:08 PM · MITK (v2024.06), Missing Info
kislinsk closed T26413: Nifti2 support as Wontfix.

Hi there! 🙂

May 17 2023, 3:01 PM · Auto-closed, Missing Info, MITK
kislinsk closed T27570: US DICOM images are read as 3D volume as Wontfix.

Hi there! 🙂

May 17 2023, 3:01 PM · Auto-closed, Missing Info, Restricted Project, MITK
kislinsk closed T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview as Wontfix.

Hi there! 🙂

May 17 2023, 3:01 PM · Missing Info, MITK