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Open tasks tagged with Next Milestone will be moved to the following milestone workboard on its creation.

Old German proverb: "Was du heute kannst besorgen, das verschiebe nicht stets auf morgen". 馃嵑

Recent Activity

Mon, Jun 7

floca added a project to T26427: Support software rendering: Next Milestone.
Mon, Jun 7, 6:53 PMMITK
a178n closed T28354: Update MITK documentation on CMAKE build for plugins as Resolved.
Mon, Jun 7, 12:14 PMNext Milestone, MITK (v2021.10)

Fri, Jun 4

kislinsk merged T28514: [Multilabel Segmentation] Changing visibility of labels on higher layers does not trigger update into T28383: [Multilabel Segmentation] In case of two layers, a change of visibility is not updated automatically.
Fri, Jun 4, 9:48 AMNext Milestone, MITK

May 3 2021

floca edited projects for T28206: Renaming segmentation or planar figure based ROI nodes breaks histogram, added: Next Milestone, MITK; removed MITK (v2021.10).
May 3 2021, 6:36 PMMITK, Next Milestone
floca added a parent task for T27284: ImageStatisticView Histogram is only supported with one image and <=1 ROI: T28206: Renaming segmentation or planar figure based ROI nodes breaks histogram.
May 3 2021, 6:35 PMMITK, Next Milestone

Apr 22 2021

floca added a comment to T28354: Update MITK documentation on CMAKE build for plugins.

could you make an arc diff. Then it is easier to review and comment in code. Thanks.

Apr 22 2021, 2:17 PMNext Milestone, MITK (v2021.10)
a178n added a comment to T28354: Update MITK documentation on CMAKE build for plugins.

Changes are pushed into the new branch T28353-cmake_faq branch.

Apr 22 2021, 7:25 AMNext Milestone, MITK (v2021.10)
a178n added a comment to T28354: Update MITK documentation on CMAKE build for plugins.

Pushed new branch to rMITK MITK: feature/T28354-cmake_faq.

Apr 22 2021, 7:17 AMNext Milestone, MITK (v2021.10)

Apr 14 2021

a178n edited projects for T28354: Update MITK documentation on CMAKE build for plugins, added: MITK (v2021.10), Next Milestone; removed Missing Info, Restricted Project.
Apr 14 2021, 11:45 AMNext Milestone, MITK (v2021.10)
thomass placed T27099: [MITKDoc] Revise Clipping Plane Plugin Documentation up for grabs.

Unassign myself because we removed the clipping plane from the release and have not discussed yet how to further proceed.

Apr 14 2021, 11:01 AMNext Milestone, MITK, Cleared

Apr 12 2021

floca added a project to T28146: Rework how SegTool2D should add contour markers: Next Milestone.
Apr 12 2021, 9:14 PMNext Milestone, MITK
floca added a project to T28259: Refactor the usage of QmitkSliceNavigationListener: Next Milestone.
Apr 12 2021, 9:13 PMNext Milestone, MITK

Apr 9 2021

floca edited projects for T27655: [statistics] Logic of DataGeneratorBase blocks the UI thread , added: MITK (v2021.10); removed MITK.
Apr 9 2021, 6:20 PMMITK (v2021.10), Next Milestone

Apr 7 2021

kleina added a comment to T28356: MITK v2021.02 does not recognize loaded mask as segmentation.

Sorry, I was on vacation.

Apr 7 2021, 9:03 AMNext Milestone, MITK

Mar 27 2021

kislinsk closed T26969: [Segmentation] New segmentation dialog: Change color twice and aborting the second time chages color to red, a subtask of T28176: [Segmentation] Inspection of module and plugin, as Resolved.
Mar 27 2021, 4:48 PMMITK (v2021.10)
kislinsk closed T28383: [Multilabel Segmentation] In case of two layers, a change of visibility is not updated automatically as Resolved.
Mar 27 2021, 4:47 PMNext Milestone, MITK

Mar 26 2021

floca closed T28356: MITK v2021.02 does not recognize loaded mask as segmentation as Resolved by committing rMITKc2c4e9649bfc: BREAKING!!!.
Mar 26 2021, 12:41 PMNext Milestone, MITK

Mar 25 2021

thomass added a parent task for T28383: [Multilabel Segmentation] In case of two layers, a change of visibility is not updated automatically: Restricted Maniphest Task.
Mar 25 2021, 12:31 PMNext Milestone, MITK

Mar 20 2021

floca added a comment to T28356: MITK v2021.02 does not recognize loaded mask as segmentation.

@j038k Hi I you look for the problem, keep in mind that the rounding error can occure when it serialized into the file (if it is in text mode). E.g. some code that saves nrrd only does it with standard precission which is in some cases 8 characters (including the dot, sign etc. this can then be not enough and you loose decimal places).

Mar 20 2021, 12:03 PMNext Milestone, MITK
j038k added a comment to T28356: MITK v2021.02 does not recognize loaded mask as segmentation.

@floca Andr茅 is on vacation. The original mask in nifty was produced by nnUNet, but we are using some of our Python scripts to split segmented tissues to different labels and to convert it into .nrrd format. Maybe there could be a rounding error during loading and saving the image header, we have to look at it.

Mar 20 2021, 9:43 AMNext Milestone, MITK

Mar 19 2021

floca added a comment to T28356: MITK v2021.02 does not recognize loaded mask as segmentation.

@kleina Even though the problem is now fix by being less pedantic, I realy would identify the reason for the fidelty loss in the mask geometry. So the information which tool produced the mask is still welcome. Especially if it one of our tools/nets so that we can fix it.

Mar 19 2021, 10:14 PMNext Milestone, MITK
thomass claimed T28383: [Multilabel Segmentation] In case of two layers, a change of visibility is not updated automatically.
Mar 19 2021, 10:36 AMNext Milestone, MITK

Mar 18 2021

floca added a revision to T28356: MITK v2021.02 does not recognize loaded mask as segmentation: Restricted Differential Revision.
Mar 18 2021, 8:41 PMNext Milestone, MITK
floca added a comment to T28356: MITK v2021.02 does not recognize loaded mask as segmentation.

@kleina Do they use multi label segmentation view or the old one?

Mar 18 2021, 6:37 PMNext Milestone, MITK
thomass added a comment to T28383: [Multilabel Segmentation] In case of two layers, a change of visibility is not updated automatically.

The issue can indeed be solved by a mitk::RenderingManager::GetInstance()->RequestUpdateAll(); in QmitkLabelsetWidget function OnVisibleButtonClicked() but there seems to be something wrong with the lock logic when "Lock All" "Unlock All" is clicked

Mar 18 2021, 8:53 AMNext Milestone, MITK

Mar 17 2021

thomass added a project to T28383: [Multilabel Segmentation] In case of two layers, a change of visibility is not updated automatically: Next Milestone.
Mar 17 2021, 1:39 PMNext Milestone, MITK

Mar 15 2021

nolden removed a project from T28374: Workbench crashes after DICOM retrieval : Missing Info.
Mar 15 2021, 9:52 AMNext Milestone, DICOM, MITK
nolden closed T28374: Workbench crashes after DICOM retrieval as Resolved.

@gaoh thanks for pointing there, I will close this one as a duplicate

Mar 15 2021, 9:51 AMNext Milestone, DICOM, MITK
nolden added a comment to T28207: MITK DicomBrowser q/r Retrieve part crash.

Another option for testing is to use dicomserver.co.uk , I think it is preconfigured in the Workbench. It's a public DICOM endpoint and the data there differs, but 5 min ago I was able to reproduce the crash with a retrieval from there. Just activate the checkbox in the MITK config table , query last month, select a few patients and retrieve. Worked for me to reproduce the crash.

Mar 15 2021, 9:50 AMMITK (v2021.10)
gaoh added a comment to T28374: Workbench crashes after DICOM retrieval .

T28207 describes how to test it without the wDB. When searching for DICOM query retrieve there are already different tasks open with all similar problems

Mar 15 2021, 9:39 AMNext Milestone, DICOM, MITK

Mar 12 2021

floca added projects to T28374: Workbench crashes after DICOM retrieval : Next Milestone, Missing Info.
Mar 12 2021, 9:08 PMNext Milestone, DICOM, MITK
kislinsk added a comment to T28172: Include MITK-ProjectTemplate in MITK Differential builds.

Started with Ubuntu 18.04 and 20.04 clients by adding the following script before the actual build. This is roughly what we are doing already in the Dashboard script.

Mar 12 2021, 10:10 AMMITK (v2021.10), CI

Mar 11 2021

floca added a comment to T28356: MITK v2021.02 does not recognize loaded mask as segmentation.

@kleina : Which tool /script generated the masks? nnUnet?

Mar 11 2021, 3:35 PMNext Milestone, MITK
floca added a comment to T28356: MITK v2021.02 does not recognize loaded mask as segmentation.

It is, once again the precision of the geometry check. :sigh:

Mar 11 2021, 2:04 PMNext Milestone, MITK
kislinsk triaged T28358: Data Manager context menu items added multiple times for multi-selections as Normal priority.
Mar 11 2021, 7:50 AMMITK (v2021.10)
kislinsk added a project to T28356: MITK v2021.02 does not recognize loaded mask as segmentation: Next Milestone.
Mar 11 2021, 7:48 AMNext Milestone, MITK
fedorov added a comment to T28039: DICOM Seg loading error.

Done - 1.2.4 is out: https://github.com/QIICR/dcmqi/releases/tag/v1.2.4

Mar 11 2021, 4:04 AMMITK (v2021.10)

Mar 10 2021

floca added a comment to T28039: DICOM Seg loading error.

@fedorov That would be great. Thank you very much!

Mar 10 2021, 8:43 PMMITK (v2021.10)
fedorov added a comment to T28039: DICOM Seg loading error.

I am planning to make a patch release soon. Let me know if you want me to update you when that is done, so you can update the release used by MITK.

Mar 10 2021, 8:02 PMMITK (v2021.10)
floca reopened T25097: ItkImageIOTest: Missing tests for reading nrrd data with time geometry as "Open".
Mar 10 2021, 10:03 AMMITK (v2021.10), Cleared, Restricted Project
floca reopened T22533: rework RTSTRUCT visualization as "Open".
Mar 10 2021, 9:56 AMNext Milestone, Restricted Project, MITK
floca reopened T24799: Optimize DicomRTIOMimeTypes as "Open".
Mar 10 2021, 9:52 AMNext Milestone, MITK
kislinsk placed T27196: Rewrite packaging of MITK up for grabs.

Currently not actively working on this. Packaging seems to work for the moment except for Python (never did). I think this task will soon be revived with the work on Python in MITK by Kim-Celine and Ashis.

Mar 10 2021, 9:16 AMMITK (v2021.10), Cleared
kislinsk edited projects for T25305: Property enums of DICOM module are not supported by scene serialization, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AMNext Milestone, MITK, Restricted Project
kislinsk edited projects for T26294: Should we move DICOMPropertyPath helper to Core, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AMNext Milestone, MITK, DICOM
kislinsk edited projects for T26970: [Segmentation] Picking tool: When no region is picked, selected node just gets unselected, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AMMITK (v2021.10), Cleared
kislinsk edited projects for T27099: [MITKDoc] Revise Clipping Plane Plugin Documentation, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AMNext Milestone, MITK, Cleared
kislinsk edited projects for T27149: [Segmentation] Interpolation nodes / position nodes are not correctly hidden, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AMRequest for Discussion, MITK (v2021.10)
kislinsk edited projects for T27834: [MITKDoc] Revise CEST views documentation, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AMNext Milestone, MITK
kislinsk edited projects for T27608: [MITKDoc] Documentation Refurbish - Developer Manual, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AMNext Milestone, MITK, Cleared