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This tag should be used to mark anything that is related to DICOM: concepts, implementations (MITK, PACS ...), new or advanced IODs like segmentation objects, parametric maps, DTI, structured reports

Recent Activity

Apr 6 2021

kislinsk edited projects for T27432: Error loading DCE-MRI DICOM image, added: MITK (v2021.10); removed MITK, Next Milestone.
Apr 6 2021, 4:29 PM · MITK (v2021.10), DICOM, Cleared

Mar 15 2021

nolden removed a project from T28374: Workbench crashes after DICOM retrieval : Missing Info.
Mar 15 2021, 9:52 AM · Next Milestone, DICOM, MITK
nolden closed T28374: Workbench crashes after DICOM retrieval as Resolved.

@gaoh thanks for pointing there, I will close this one as a duplicate

Mar 15 2021, 9:51 AM · Next Milestone, DICOM, MITK
gaoh added a comment to T28374: Workbench crashes after DICOM retrieval .

T28207 describes how to test it without the wDB. When searching for DICOM query retrieve there are already different tasks open with all similar problems

Mar 15 2021, 9:39 AM · Next Milestone, DICOM, MITK

Mar 12 2021

floca added projects to T28374: Workbench crashes after DICOM retrieval : Next Milestone, Missing Info.
Mar 12 2021, 9:08 PM · Next Milestone, DICOM, MITK
nolden triaged T28374: Workbench crashes after DICOM retrieval as High priority.
Mar 12 2021, 3:45 PM · Next Milestone, DICOM, MITK

Mar 10 2021

floca reopened T26949: DICOM SEG - 3D segmentations with only one slice cannot be reloaded as DICOM SEG as "Open".
Mar 10 2021, 9:42 AM · MITK, DICOM, Missing Info
kislinsk edited projects for T26294: Should we move DICOMPropertyPath helper to Core, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · Next Milestone, MITK, DICOM
kislinsk closed T26949: DICOM SEG - 3D segmentations with only one slice cannot be reloaded as DICOM SEG as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:02 AM · MITK, DICOM, Missing Info

Nov 28 2020

kislinsk closed T27669: Dicom import issue with MITK binaries (package) and Ubuntu as Resolved.

Fixed in T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers.

Nov 28 2020, 5:11 AM · Missing Info, DICOM, MITK

Nov 25 2020

thomass closed T27696: Dicom loading does not work for some 4D data with the latest installer as Resolved.
Nov 25 2020, 8:25 AM · DICOM, Missing Info, MITK

Nov 24 2020

floca added a comment to T27696: Dicom loading does not work for some 4D data with the latest installer.

@thomass could you check if the problem was realy just cuased by slow network drive and is solved. If this is the case, could you close the task? If the problem still exists, may be the issue solved by Stefan is a solution.

Nov 24 2020, 5:17 PM · DICOM, Missing Info, MITK
kislinsk closed T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers, a subtask of T27669: Dicom import issue with MITK binaries (package) and Ubuntu, as Resolved.
Nov 24 2020, 9:53 AM · Missing Info, DICOM, MITK
kislinsk closed T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers, a subtask of T27696: Dicom loading does not work for some 4D data with the latest installer, as Resolved.
Nov 24 2020, 9:53 AM · DICOM, Missing Info, MITK

Nov 23 2020

kislinsk added a subtask for T27696: Dicom loading does not work for some 4D data with the latest installer: T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers.
Nov 23 2020, 11:48 AM · DICOM, Missing Info, MITK
kislinsk added a comment to T27696: Dicom loading does not work for some 4D data with the latest installer.

Maybe this is related to T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers.

Nov 23 2020, 11:48 AM · DICOM, Missing Info, MITK
kislinsk added a subtask for T27669: Dicom import issue with MITK binaries (package) and Ubuntu: T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers.
Nov 23 2020, 11:48 AM · Missing Info, DICOM, MITK
kislinsk added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Possibly as duplicate of T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers. There's a workaround in the task that you could use to verify if it is the same issue.

Nov 23 2020, 11:47 AM · Missing Info, DICOM, MITK

Oct 9 2020

nolden added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

PS: as an explanation, one theory is that the install-zip-package still references libraries from the build machine which causes the different behaviour

Oct 9 2020, 11:34 AM · Missing Info, DICOM, MITK
nolden added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

@nolden I tried the "make package" and it went through without any issues.
Should I upload the result here? Or is it just about the information that there are no error?
Could you please explain what you mean with "target machine"?

Oct 9 2020, 11:33 AM · Missing Info, DICOM, MITK
kislinsk added a parent task for T27669: Dicom import issue with MITK binaries (package) and Ubuntu: T27196: Rewrite packaging of MITK.
Oct 9 2020, 11:26 AM · Missing Info, DICOM, MITK

Sep 25 2020

schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

@nolden I tried the "make package" and it went through without any issues.
Should I upload the result here? Or is it just about the information that there are no error?
Could you please explain what you mean with "target machine"?

Sep 25 2020, 1:14 PM · Missing Info, DICOM, MITK
nolden added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

@schererj we looked at the debug output, thanks. Unfortunately it seems to be complicated ... I would ask you to try another thing:

Sep 25 2020, 12:09 PM · Missing Info, DICOM, MITK

Sep 14 2020

schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Yes, the workbench is starting without any issues.

Sep 14 2020, 6:07 PM · Missing Info, DICOM, MITK
floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Did you your "release ldd" Workbench started and worked properly at all? Seems like most of the SOs could not be loaded correctly. Not even MitkCore. I would assume that workbench does not even start?!?

Sep 14 2020, 3:24 PM · Missing Info, DICOM, MITK
schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

I hope I did it right..

Sep 14 2020, 1:19 PM · Missing Info, DICOM, MITK

Sep 11 2020

nolden added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

@schererj we just discussed this in the MITK meeting. Could you try something? It would be interesting to compare the outputs of

Sep 11 2020, 11:22 AM · Missing Info, DICOM, MITK

Sep 10 2020

kislinsk added a project to T27432: Error loading DCE-MRI DICOM image: MITK.
Sep 10 2020, 5:38 PM · MITK (v2021.10), DICOM, Cleared
floca edited projects for T27432: Error loading DCE-MRI DICOM image, added: Next Milestone; removed MITK (v2021.02).
Sep 10 2020, 4:33 PM · MITK (v2021.10), DICOM, Cleared

Sep 3 2020

kislinsk added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

@kislinsk As a linux noob please pardon my question. Can we directly debug the nightly bild by the CI on e.g. Jonas system? I would like to see some of the parts of volume generation process running to see whats happening. My be it helps us getting a lead. At least we now a setup directly on site that makes the problems.

Sep 3 2020, 10:48 PM · Missing Info, DICOM, MITK

Sep 2 2020

thomass added a comment to T27696: Dicom loading does not work for some 4D data with the latest installer.

I just received an E-Mail that the problem could be related to the data source (some server or network drive) so maybe no MITK issue after all :)

Sep 2 2020, 10:04 AM · DICOM, Missing Info, MITK
floca added projects to T27696: Dicom loading does not work for some 4D data with the latest installer: Missing Info, DICOM.

Some additional questions:

  • Was your laptop used to build the binaries? If yes, could you check, if yuo can produce the error behavior if you pick a non-mitk-developer maschine and try to load the data there?
  • How many frames does the 4D Dicom have? What is its resolution?
Sep 2 2020, 9:59 AM · DICOM, Missing Info, MITK

Sep 1 2020

floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

The log information in the console which Jonas reported doesn't turn up. So the console doesn't show any new information after the reader is selected.
I will ask about the HDD / IO.

Sep 1 2020, 6:19 PM · Missing Info, DICOM, MITK
thomass added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

The log information in the console which Jonas reported doesn't turn up. So the console doesn't show any new information after the reader is selected.
I will ask about the HDD / IO.

Sep 1 2020, 6:12 PM · Missing Info, DICOM, MITK
floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

she doesn't even get to the logging point. It doesn't show anything, it just stops (She closed the workbench after 10 Minutes).

What do you mean with logging point?

Sep 1 2020, 6:01 PM · Missing Info, DICOM, MITK
thomass added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

I am not sure if that is related but today one of my cooperation partners reported that she couldn't open an 4D image in MITK (Latest develop installer).
On my laptop it just works fine. On her laptop, however, she doesn't even get to the logging point. It doesn't show anything, it just stops (She closed the workbench after 10 Minutes).
I asked her whether it was an ancient laptop, but no ;)

Sep 1 2020, 5:56 PM · Missing Info, DICOM, MITK
floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

It is pretty weird since it even:

suggests 1 3D blocks

Sep 1 2020, 5:31 PM · Missing Info, DICOM, MITK
kislinsk added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

I agree to @floca and I am quite sure this is related to installer vs. starting from build directory.

Sep 1 2020, 11:19 AM · Missing Info, DICOM, MITK
schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

It is pretty weird since it even:

Sep 1 2020, 10:57 AM · Missing Info, DICOM, MITK
floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Remark: It could be releated to T26451 and caused by the same underlying problem.

Sep 1 2020, 10:29 AM · Missing Info, DICOM, MITK
schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Yes I'm using the normal desktop workbench - no Docker involved :)

Sep 1 2020, 10:15 AM · Missing Info, DICOM, MITK

Aug 31 2020

floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.
In T27669#208866, @gaoh wrote:

As I understand @schererj he is not using a MITK container but the binaries from the MITK-nightly build.

I have checked it with the todays nightly build of MITK from CI. So this does work.
@schererj Could you give some details on what binaries you have used?

Aug 31 2020, 5:00 PM · Missing Info, DICOM, MITK
gaoh added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

I have checked it with the current develop head under linux (Ubuntu 18) as well. I cannot reproduce the descibed error. Everything is loaded into one volume.

@gaoh May it is an outdated MITK container?

Aug 31 2020, 4:28 PM · Missing Info, DICOM, MITK
floca added a project to T27669: Dicom import issue with MITK binaries (package) and Ubuntu: Missing Info.

I have checked it with the current develop head under linux (Ubuntu 18) as well. I cannot reproduce the descibed error. Everything is loaded into one volume.

Aug 31 2020, 4:21 PM · Missing Info, DICOM, MITK

Aug 28 2020

floca closed T24710: Check failing dicom data in MITK-Data as Resolved.
Aug 28 2020, 12:08 PM · DICOM, Restricted Project, MITK
floca removed projects from T24710: Check failing dicom data in MITK-Data: Request for Discussion, Missing Info.

Discussion result: We close this task. All known issues still open are covered by T27568: US 2D image cannot be read: invalid tilt information. If needed we can open the task again.

Aug 28 2020, 12:08 PM · DICOM, Restricted Project, MITK

Aug 24 2020

floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Checked on windows (develop branch 10.8.; binaries and build tree): DICOM Reader v2 (auto select) works correctly. Have to look into it on Ubuntu.

Aug 24 2020, 1:31 PM · Missing Info, DICOM, MITK

Aug 12 2020

schererj triaged T27669: Dicom import issue with MITK binaries (package) and Ubuntu as Low priority.
Aug 12 2020, 5:30 PM · Missing Info, DICOM, MITK

Jul 29 2020

floca closed T25805: Standardize/Rework DICOM module naming as Resolved by committing rMITKfb6195ff763a: Cleaned up naming of DICOM related modules.
Jul 29 2020, 9:37 PM · Noteworthy, Breaking Change, MITK (v2021.02), DICOM

Jul 25 2020

floca claimed T25805: Standardize/Rework DICOM module naming.
Jul 25 2020, 5:26 PM · Noteworthy, Breaking Change, MITK (v2021.02), DICOM