diff --git a/tests/testthat/test-rankThenAggregate.R b/tests/testthat/test-rankThenAggregate.R index ae63900..8ce5459 100644 --- a/tests/testthat/test-rankThenAggregate.R +++ b/tests/testthat/test-rankThenAggregate.R @@ -1,286 +1,286 @@ test_that("rank-then-aggregate by mean works with two algorithms for one case, small values are better", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%rankThenAggregate(FUN = mean) expectedRanking <- rbind( - "A1" = data.frame(rank_mean = 1, rank = 1), - "A2" = data.frame(rank_mean = 2, rank = 2)) + "A1" = data.frame(rank_FUN = 1, rank = 1), + "A2" = data.frame(rank_FUN = 2, rank = 2)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("rank-then-aggregate by mean works with two algorithms (reverse order) for one case, small values are better", { data <- rbind( data.frame(algo = "A2", value = 0.8, case = "C1"), data.frame(algo = "A1", value = 0.6, case = "C1")) - challenge <- as.challenge(data, algorithm = "algo", case = "case", value = "value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm = "algo", case = "case", value = "value", smallBetter = TRUE) ranking <- challenge%>%rankThenAggregate(FUN = mean) - expectedRanking <- rbind("A2" = data.frame(rank_mean = 2, rank = 2), - "A1" = data.frame(rank_mean = 1, rank = 1)) + expectedRanking <- rbind("A2" = data.frame(rank_FUN = 2, rank = 2), + "A1" = data.frame(rank_FUN = 1, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("rank-then-aggregate by mean works with two algorithms for one case, large values are better", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = FALSE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = FALSE) ranking <- challenge%>%rankThenAggregate(FUN = mean) expectedRanking <- rbind( - "A1" = data.frame(rank_mean = 2, rank = 2), - "A2" = data.frame(rank_mean = 1, rank = 1)) + "A1" = data.frame(rank_FUN = 2, rank = 2), + "A2" = data.frame(rank_FUN = 1, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("rank-then-aggregate by mean works with two algorithms (reverse order) for one case, large values are better", { data <- rbind( data.frame(algo = "A2", value = 0.8, case = "C1"), data.frame(algo = "A1", value = 0.6, case = "C1")) - challenge <- as.challenge(data, algorithm = "algo", case = "case", value = "value", smallBetter = FALSE) + challenge <- as.challenge(data, taskName="T1", algorithm = "algo", case = "case", value = "value", smallBetter = FALSE) ranking <- challenge%>%rankThenAggregate(FUN = mean) - expectedRanking <- rbind("A2" = data.frame(rank_mean = 1, rank = 1), - "A1" = data.frame(rank_mean = 2, rank = 2)) + expectedRanking <- rbind("A2" = data.frame(rank_FUN = 1, rank = 1), + "A1" = data.frame(rank_FUN = 2, rank = 2)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("rank-then-aggregate raises error for invalid aggregation function", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.6, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) expect_error(challenge%>%rankThenAggregate(FUN = meanx), "object 'meanx' not found", fixed = TRUE) }) test_that("rank-then-aggregate by mean works with two algorithms for one case and 'min' as ties method", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.6, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%rankThenAggregate(FUN = mean, ties.method = "min") expectedRanking <- rbind( - "A1" = data.frame(rank_mean = 1, rank = 1), - "A2" = data.frame(rank_mean = 1, rank = 1)) + "A1" = data.frame(rank_FUN = 1, rank = 1), + "A2" = data.frame(rank_FUN = 1, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("rank-then-aggregate by mean works with two algorithms for one case and 'max' as ties method", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.6, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%rankThenAggregate(FUN = mean, ties.method = "max") expectedRanking <- rbind( - "A1" = data.frame(rank_mean = 2, rank = 2), - "A2" = data.frame(rank_mean = 2, rank = 2)) + "A1" = data.frame(rank_FUN = 2, rank = 2), + "A2" = data.frame(rank_FUN = 2, rank = 2)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("rank-then-aggregate raises error for invalid ties method", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.6, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) expect_error(challenge%>%rankThenAggregate(FUN = mean, ties.method = "maxx"), "'arg' should be one of \"average\", \"first\", \"last\", \"random\", \"max\", \"min\"", fixed = TRUE) }) test_that("rank-then-aggregate raises error for invalid ties method even when no ties present", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) expect_error(challenge%>%rankThenAggregate(FUN = mean, ties.method = "maxx"), "'arg' should be one of \"average\", \"first\", \"last\", \"random\", \"max\", \"min\"", fixed = TRUE) }) test_that("rank-then-aggregate by mean works with two algorithms for two cases", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A1", value=0.4, case="C2"), data.frame(algo="A2", value=0.8, case="C1"), data.frame(algo="A2", value=1.0, case="C2")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%rankThenAggregate(FUN = mean) expectedRanking <- rbind( - "A1" = data.frame(rank_mean = 1, rank = 1), - "A2" = data.frame(rank_mean = 2, rank = 2)) + "A1" = data.frame(rank_FUN = 1, rank = 1), + "A2" = data.frame(rank_FUN = 2, rank = 2)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("rank-then-aggregate by median works with two algorithms for two cases", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A1", value=0.4, case="C2"), data.frame(algo="A2", value=0.8, case="C1"), data.frame(algo="A2", value=1.0, case="C2")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%rankThenAggregate(FUN = median) expectedRanking <- rbind( - "A1" = data.frame(rank_median = 1, rank = 1), - "A2" = data.frame(rank_median = 2, rank = 2)) + "A1" = data.frame(rank_FUN = 1, rank = 1), + "A2" = data.frame(rank_FUN = 2, rank = 2)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("rank-then-aggregate by mean works with one algorithm for one case", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%rankThenAggregate(FUN = mean) expectedRanking <- rbind( - "A1" = data.frame(rank_mean = 1, rank = 1)) + "A1" = data.frame(rank_FUN = 1, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("rank-then-aggregate assigns worst rank for NA", { data <- rbind( data.frame(algo="A1", value=NA, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = FALSE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = FALSE) ranking <- challenge%>%rankThenAggregate(FUN = mean) expectedRanking <- rbind( - "A1" = data.frame(rank_mean = 2, rank = 2), - "A2" = data.frame(rank_mean = 1, rank = 1)) + "A1" = data.frame(rank_FUN = 2, rank = 2), + "A2" = data.frame(rank_FUN = 1, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("rank-then-aggregate raises error for unused NA treatment argument", { data <- rbind( data.frame(algo="A1", value=NA, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = FALSE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = FALSE) expect_error(challenge%>%rankThenAggregate(FUN = mean, na.treat = 0), "unused argument (na.treat = 0)", fixed = TRUE) }) test_that("rank-then-aggregate by mean works for multi-task challenge (2 tasks in data set), no missing data", { dataTask1 <- cbind(task="T1", rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1") )) dataTask2 <- cbind(task="T2", rbind( data.frame(algo="A1", value=0.5, case="C1"), data.frame(algo="A2", value=0.4, case="C1") )) data <- rbind(dataTask1, dataTask2) challenge <- as.challenge(data, by="task", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%rankThenAggregate(FUN = mean) expectedRankingTask1 <- rbind( "A1" = data.frame(rank_FUN = 1, rank = 1), "A2" = data.frame(rank_FUN = 2, rank = 2)) expectedRankingTask2 <- rbind( "A1" = data.frame(rank_FUN = 2, rank = 2), "A2" = data.frame(rank_FUN = 1, rank = 1)) expect_equal(ranking$matlist$T1, expectedRankingTask1) expect_equal(ranking$matlist$T2, expectedRankingTask2) }) test_that("rank-then-aggregate assigns worst rank for NA in multi-task challenge (2 tasks in data set)", { dataTask1 <- cbind(task="T1", rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1") )) dataTask2 <- cbind(task="T2", rbind( data.frame(algo="A1", value=NA, case="C1"), data.frame(algo="A2", value=0.4, case="C1") )) data <- rbind(dataTask1, dataTask2) challenge <- as.challenge(data, by="task", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%rankThenAggregate(FUN = mean) expectedRankingTask1 <- rbind( "A1" = data.frame(rank_FUN = 1, rank = 1), "A2" = data.frame(rank_FUN = 2, rank = 2)) expectedRankingTask2 <- rbind( "A1" = data.frame(rank_FUN = 2, rank = 2), "A2" = data.frame(rank_FUN = 1, rank = 1)) expect_equal(ranking$matlist$T1, expectedRankingTask1) expect_equal(ranking$matlist$T2, expectedRankingTask2) }) test_that("rank-then-aggregate raises error for unused NA treatment argument in multi-task challenge (2 tasks in data set)", { dataTask1 <- cbind(task="T1", rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1") )) dataTask2 <- cbind(task="T2", rbind( data.frame(algo="A1", value=NA, case="C1"), data.frame(algo="A2", value=0.4, case="C1") )) data <- rbind(dataTask1, dataTask2) challenge <- as.challenge(data, by="task", algorithm="algo", case="case", value="value", smallBetter = TRUE) expect_error(challenge%>%rankThenAggregate(FUN = mean, na.treat = "na.rm"), "unused argument (na.treat = \"na.rm\")", fixed = TRUE) })