diff --git a/tests/testthat/test-aggregateThenRank.R b/tests/testthat/test-aggregateThenRank.R index 796b508..a4f55e2 100644 --- a/tests/testthat/test-aggregateThenRank.R +++ b/tests/testthat/test-aggregateThenRank.R @@ -1,346 +1,346 @@ test_that("aggregate-than-rank by mean works with two algorithms for one case, small values are better", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%aggregateThenRank(FUN = mean) expectedRanking <- rbind( "A1" = data.frame(value_FUN = 0.6, rank = 1), "A2" = data.frame(value_FUN = 0.8, rank = 2)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("aggregate-than-rank by mean works with two algorithms (reverse order) for one case, small values are better", { data <- rbind( data.frame(algo = "A2", value = 0.8, case = "C1"), data.frame(algo = "A1", value = 0.6, case = "C1")) - challenge <- as.challenge(data, algorithm = "algo", case = "case", value = "value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm = "algo", case = "case", value = "value", smallBetter = TRUE) ranking <- challenge%>%aggregateThenRank(FUN = mean) expectedRanking <- rbind("A2" = data.frame(value_FUN = 0.8, rank = 2), "A1" = data.frame(value_FUN = 0.6, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("aggregate-than-rank by mean works with two algorithms for one case, large values are better", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = FALSE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = FALSE) ranking <- challenge%>%aggregateThenRank(FUN = mean) expectedRanking <- rbind( "A1" = data.frame(value_FUN = 0.6, rank = 2), "A2" = data.frame(value_FUN = 0.8, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("aggregate-than-rank by mean works with two algorithms (reverse order) for one case, large values are better", { data <- rbind( data.frame(algo = "A2", value = 0.8, case = "C1"), data.frame(algo = "A1", value = 0.6, case = "C1")) - challenge <- as.challenge(data, algorithm = "algo", case = "case", value = "value", smallBetter = FALSE) + challenge <- as.challenge(data, taskName="T1", algorithm = "algo", case = "case", value = "value", smallBetter = FALSE) ranking <- challenge%>%aggregateThenRank(FUN = mean) expectedRanking <- rbind("A2" = data.frame(value_FUN = 0.8, rank = 1), "A1" = data.frame(value_FUN = 0.6, rank = 2)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("aggregate-than-rank raises error for invalid aggregation function", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.6, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) expect_error(challenge%>%aggregateThenRank(FUN = meanx), "object 'meanx' not found", fixed = TRUE) }) test_that("aggregate-than-rank by mean works with two algorithms for one case and 'min' as ties method", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.6, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%aggregateThenRank(FUN = mean, ties.method = "min") expectedRanking <- rbind( "A1" = data.frame(value_FUN = 0.6, rank = 1), "A2" = data.frame(value_FUN = 0.6, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("aggregate-than-rank by mean works with two algorithms for one case and 'max' as ties method", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.6, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%aggregateThenRank(FUN = mean, ties.method = "max") expectedRanking <- rbind( "A1" = data.frame(value_FUN = 0.6, rank = 2), "A2" = data.frame(value_FUN = 0.6, rank = 2)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("aggregate-than-rank raises error for invalid ties method", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.6, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) expect_error(challenge%>%aggregateThenRank(FUN = mean, ties.method = "maxx"), "'arg' should be one of \"average\", \"first\", \"last\", \"random\", \"max\", \"min\"", fixed = TRUE) }) test_that("aggregate-than-rank raises error for invalid ties method even when no ties present", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) expect_error(challenge%>%aggregateThenRank(FUN = mean, ties.method = "maxx"), "'arg' should be one of \"average\", \"first\", \"last\", \"random\", \"max\", \"min\"", fixed = TRUE) }) test_that("aggregate-than-rank by mean works with two algorithms for two cases", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A1", value=0.4, case="C2"), data.frame(algo="A2", value=0.8, case="C1"), data.frame(algo="A2", value=1.0, case="C2")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%aggregateThenRank(FUN = mean) expectedRanking <- rbind( "A1" = data.frame(value_FUN = 0.5, rank = 1), "A2" = data.frame(value_FUN = 0.9, rank = 2)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("aggregate-than-rank by median works with two algorithms for two cases", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A1", value=0.4, case="C2"), data.frame(algo="A2", value=0.8, case="C1"), data.frame(algo="A2", value=1.0, case="C2")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%aggregateThenRank(FUN = median) expectedRanking <- rbind( "A1" = data.frame(value_FUN = 0.5, rank = 1), "A2" = data.frame(value_FUN = 0.9, rank = 2)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("aggregate-than-rank by mean works with one algorithm for one case", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = TRUE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%aggregateThenRank(FUN = mean) expectedRanking <- rbind( "A1" = data.frame(value_FUN = 0.6, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("aggregate-than-rank raises error when no NA treatment specified but NAs are contained", { data <- rbind( data.frame(algo="A1", value=NA, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = FALSE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = FALSE) expect_error(challenge%>%aggregateThenRank(FUN = mean), "argument \"na.treat\" is missing, with no default", fixed = TRUE) }) test_that("aggregate-than-rank raises error when invalid NA treatment specified and NAs are contained", { data <- rbind( data.frame(algo="A1", value=NA, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = FALSE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = FALSE) expect_error(challenge%>%aggregateThenRank(FUN = mean, na.treat = "na.rmx"), "Argument \"na.treat\" is invalid. It can be \"na.rm\", numeric value or function.", fixed = TRUE) }) test_that("specified NA treatment does not influence ranking when no NAs are contained", { data <- rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = FALSE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = FALSE) ranking <- challenge%>%aggregateThenRank(FUN = mean, na.treat = 0) expectedRanking <- rbind( "A1" = data.frame(value_FUN = 0.6, rank = 2), "A2" = data.frame(value_FUN = 0.8, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("NAs are replaced by numeric value", { data <- rbind( data.frame(algo="A1", value=NA, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = FALSE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = FALSE) ranking <- challenge%>%aggregateThenRank(FUN = mean, na.treat = 0) expectedRanking <- rbind( "A1" = data.frame(value_FUN = 0.0, rank = 2), "A2" = data.frame(value_FUN = 0.8, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("NAs are replaced by function value", { data <- rbind( data.frame(algo="A1", value=NA, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) replacementFunction <- function(x) { -1 } - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = FALSE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = FALSE) ranking <- challenge%>%aggregateThenRank(FUN = mean, na.treat = replacementFunction) expectedRanking <- rbind( "A1" = data.frame(value_FUN = -1.0, rank = 2), "A2" = data.frame(value_FUN = 0.8, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("NAs are removed", { data <- rbind( data.frame(algo="A1", value=NA, case="C1"), data.frame(algo="A2", value=0.8, case="C1")) - challenge <- as.challenge(data, algorithm="algo", case="case", value="value", smallBetter = FALSE) + challenge <- as.challenge(data, taskName="T1", algorithm="algo", case="case", value="value", smallBetter = FALSE) ranking <- challenge%>%aggregateThenRank(FUN = mean, na.treat = "na.rm") expectedRanking <- rbind( "A2" = data.frame(value_FUN = 0.8, rank = 1)) - expect_equal(ranking$mat, expectedRanking) + expect_equal(ranking$matlist$T1, expectedRanking) }) test_that("aggregate-than-rank by mean works for multi-task challenge (2 tasks in data set), no missing data", { dataTask1 <- cbind(task="T1", rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1") )) dataTask2 <- cbind(task="T2", rbind( data.frame(algo="A1", value=0.5, case="C1"), data.frame(algo="A2", value=0.4, case="C1") )) data <- rbind(dataTask1, dataTask2) challenge <- as.challenge(data, by="task", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%aggregateThenRank(FUN = mean) expectedRankingTask1 <- rbind( "A1" = data.frame(value_FUN = 0.6, rank = 1), "A2" = data.frame(value_FUN = 0.8, rank = 2)) expectedRankingTask2 <- rbind( "A1" = data.frame(value_FUN = 0.5, rank = 2), "A2" = data.frame(value_FUN = 0.4, rank = 1)) expect_equal(ranking$matlist$T1, expectedRankingTask1) expect_equal(ranking$matlist$T2, expectedRankingTask2) }) test_that("NAs are replaced by numeric value in multi-task challenge (2 tasks in data set)", { dataTask1 <- cbind(task="T1", rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1") )) dataTask2 <- cbind(task="T2", rbind( data.frame(algo="A1", value=NA, case="C1"), data.frame(algo="A2", value=0.4, case="C1") )) data <- rbind(dataTask1, dataTask2) challenge <- as.challenge(data, by="task", algorithm="algo", case="case", value="value", smallBetter = TRUE) ranking <- challenge%>%aggregateThenRank(FUN = mean, na.treat = 100) expectedRankingTask1 <- rbind( "A1" = data.frame(value_FUN = 0.6, rank = 1), "A2" = data.frame(value_FUN = 0.8, rank = 2)) expectedRankingTask2 <- rbind( "A1" = data.frame(value_FUN = 100.0, rank = 2), "A2" = data.frame(value_FUN = 0.4, rank = 1)) expect_equal(ranking$matlist$T1, expectedRankingTask1) expect_equal(ranking$matlist$T2, expectedRankingTask2) }) test_that("aggregate-than-rank raises error when no NA treatment specified but NAs are contained in multi-task challenge (2 tasks in data set)", { dataTask1 <- cbind(task="T1", rbind( data.frame(algo="A1", value=0.6, case="C1"), data.frame(algo="A2", value=0.8, case="C1") )) dataTask2 <- cbind(task="T2", rbind( data.frame(algo="A1", value=NA, case="C1"), data.frame(algo="A2", value=0.4, case="C1") )) data <- rbind(dataTask1, dataTask2) challenge <- as.challenge(data, by="task", algorithm="algo", case="case", value="value", smallBetter = TRUE) expect_error(challenge%>%aggregateThenRank(FUN = mean), "argument \"na.treat\" is missing, with no default", fixed = TRUE) })