diff --git a/Modules/DiffusionImaging/DiffusionCore/Algorithms/itkTensorImageToDiffusionImageFilter.h b/Modules/DiffusionImaging/DiffusionCore/Algorithms/itkTensorImageToDiffusionImageFilter.h index 621afb47a9..caf02fe218 100644 --- a/Modules/DiffusionImaging/DiffusionCore/Algorithms/itkTensorImageToDiffusionImageFilter.h +++ b/Modules/DiffusionImaging/DiffusionCore/Algorithms/itkTensorImageToDiffusionImageFilter.h @@ -1,160 +1,158 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ /*========================================================================= Program: Tensor ToolKit - TTK Module: $URL: svn://scm.gforge.inria.fr/svn/ttk/trunk/Algorithms/itkTensorImageToDiffusionImageFilter.h $ Language: C++ Date: $Date: 2010-06-07 13:39:13 +0200 (Mo, 07 Jun 2010) $ Version: $Revision: 68 $ Copyright (c) INRIA 2010. All rights reserved. See LICENSE.txt for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notices for more information. =========================================================================*/ #ifndef _itk_TensorImageToDiffusionImageFilter_h_ #define _itk_TensorImageToDiffusionImageFilter_h_ #include "itkImageToImageFilter.h" #include #include -#include - namespace itk { template class TensorImageToDiffusionImageFilter : public ImageToImageFilter,3>, itk::VectorImage > { public: typedef TInputScalarType InputScalarType; typedef itk::DiffusionTensor3D InputPixelType; typedef itk::Image InputImageType; typedef typename InputImageType::RegionType InputImageRegionType; typedef TOutputScalarType OutputScalarType; typedef itk::VectorImage OutputImageType; typedef typename OutputImageType::PixelType OutputPixelType; typedef typename OutputImageType::RegionType OutputImageRegionType; typedef OutputScalarType BaselineScalarType; typedef BaselineScalarType BaselinePixelType; typedef typename itk::Image BaselineImageType; typedef typename BaselineImageType::RegionType BaselineImageRegionType; typedef TensorImageToDiffusionImageFilter Self; typedef ImageToImageFilter Superclass; typedef SmartPointer Pointer; typedef SmartPointer ConstPointer; itkTypeMacro (TensorImageToDiffusionImageFilter, ImageToImageFilter); itkStaticConstMacro (ImageDimension, unsigned int, OutputImageType::ImageDimension); itkNewMacro (Self); typedef vnl_vector_fixed GradientType; typedef VectorContainer GradientListType; typedef GradientListType::Pointer GradientListPointerType; /** Manually Set/Get a list of gradients */ void SetGradientList(const GradientListPointerType list) { m_GradientList = list; this->Modified(); } GradientListPointerType GetGradientList(void) const {return m_GradientList;} void SetBValue( const double& bval) { m_BValue = bval; } /** * @brief Set an external baseline image for signal generation (optional) * * An option to enforce a specific baseline image. If none provided (default) the filter uses * the itk::TensorToL2NormImageFilter to generate the modelled baseline image. */ void SetExternalBaselineImage( typename BaselineImageType::Pointer bimage) { m_BaselineImage = bimage; } itkSetMacro(Min, OutputScalarType); itkSetMacro(Max, OutputScalarType); protected: TensorImageToDiffusionImageFilter() { m_BValue = 1.0; m_BaselineImage = 0; m_Min = 0.0; m_Max = 10000.0; } ~TensorImageToDiffusionImageFilter(){} void PrintSelf (std::ostream& os, Indent indent) const { Superclass::PrintSelf (os, indent); } void BeforeThreadedGenerateData( void ); void ThreadedGenerateData( const OutputImageRegionType &outputRegionForThread, ThreadIdType); //void GenerateData(); private: TensorImageToDiffusionImageFilter (const Self&); void operator=(const Self&); GradientListPointerType m_GradientList; double m_BValue; typename BaselineImageType::Pointer m_BaselineImage; OutputScalarType m_Min; OutputScalarType m_Max; }; } // end of namespace #ifndef ITK_MANUAL_INSTANTIATION #include "itkTensorImageToDiffusionImageFilter.txx" #endif #endif