diff --git a/Modules/SegmentationUI/Qmitk/QmitknnUNetFolderParser.h b/Modules/SegmentationUI/Qmitk/QmitknnUNetFolderParser.h index c007558067..7edf2882fe 100644 --- a/Modules/SegmentationUI/Qmitk/QmitknnUNetFolderParser.h +++ b/Modules/SegmentationUI/Qmitk/QmitknnUNetFolderParser.h @@ -1,322 +1,328 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file.s ============================================================================*/ #ifndef QmitknnUNetFolderParser_h_Included #define QmitknnUNetFolderParser_h_Included #include "QmitknnUNetToolGUI.h" #include #include #include /** * @brief Struct to store each (Folder) Node of the hierarchy tree structure. * */ struct FolderNode { QString name; QString path; // parent std::vector> subFolders; }; /** * @brief Class to store and retreive folder hierarchy information * of RESULTS_FOLDER. Only Root node is explicitly stored in m_RootNode. * No. of sub levels in the hierachry is defined in the LEVEL constant. * */ class MITKSEGMENTATIONUI_EXPORT QmitknnUNetFolderParser { public: /** * @brief Construct a new QmitknnUNetFolderParser object * Initializes root folder node object pointer calls * @param parentFolder */ QmitknnUNetFolderParser(const QString parentFolder) { m_RootNode = std::make_shared(); m_RootNode->path = parentFolder; m_RootNode->name = QString("nnUNet"); m_RootNode->subFolders.clear(); InitDirs(m_RootNode, 0); } /** * @brief Destroy the QmitknnUNetFolderParser object * */ ~QmitknnUNetFolderParser() = default; /*{ DeleteDirs(m_RootNode, LEVEL); }*/ /** * @brief Returns the "Results Folder" string which is parent path of the root node. * * @return QString */ QString getResultsFolder() { return m_RootNode->path; } /** * @brief Returns the Model Names from root node. Template function, * type can be any of stl or Qt containers which supports push_back call. * * @tparam T * @return T (any of stl or Qt containers which supports push_back call) */ template T getModelNames() { auto models = GetSubFolderNamesFromNode(m_RootNode); return models; } /** * @brief Returns the task names for a given model. Template function, * type can be any of stl or Qt containers which supports push_back call. * * @tparam T * @param modelName * @return T (any of stl or Qt containers which supports push_back call) */ template T getTasksForModel(const QString &modelName) { std::shared_ptr modelNode = GetSubNodeMatchingNameCrietria(modelName, m_RootNode); auto tasks = GetSubFolderNamesFromNode(modelNode); return tasks; } /** * @brief Returns the models names for a given task. Template function, * type can be any of stl or Qt containers which supports push_back call. * * @tparam T * @param taskName * @return T (any of stl or Qt containers which supports push_back call) */ template T getModelsForTask(const QString &taskName) { T modelsForTask; auto models = GetSubFolderNamesFromNode(m_RootNode); foreach (QString model, models) { QStringList taskList = getTasksForModel(model); if (taskList.contains(taskName, Qt::CaseInsensitive)) { modelsForTask << model; } } return modelsForTask; } /** * @brief Returns all the task names present in the root node with possible duplicates. * Template function, type can be any of stl or Qt containers which supports push_back call. * * @param T * @param taskName * @return T (any of stl or Qt containers which supports push_back call) */ template T getAllTasks() { T allTasks; auto models = GetSubFolderNamesFromNode(m_RootNode); foreach (QString model, models) { allTasks << getTasksForModel(model); } return allTasks; } /** * @brief Returns the trainer / planner names for a given task & model. Template function, * type can be any of stl or Qt containers which supports push_back call. * * @tparam T * @param taskName * @param modelName * @return T (any of stl or Qt containers which supports push_back call) */ template T getTrainerPlannersForTask(const QString &taskName, const QString &modelName) { std::shared_ptr modelNode = GetSubNodeMatchingNameCrietria(modelName, m_RootNode); std::shared_ptr taskNode = GetSubNodeMatchingNameCrietria(taskName, modelNode); auto tps = GetSubFolderNamesFromNode(taskNode); return tps; } /** * @brief Returns the Folds names for a given trainer,planner,task & model name. Template function, * type can be any of stl or Qt containers which supports push_back call. * * @tparam T * @param trainer * @param planner * @param taskName * @param modelName * @return T (any of stl or Qt containers which supports push_back call) */ template T getFoldsForTrainerPlanner(const QString &trainer, const QString &planner, const QString &taskName, const QString &modelName) { std::shared_ptr modelNode = GetSubNodeMatchingNameCrietria(modelName, m_RootNode); std::shared_ptr taskNode = GetSubNodeMatchingNameCrietria(taskName, modelNode); QString trainerPlanner = trainer + QString("__") + planner; std::shared_ptr tpNode = GetSubNodeMatchingNameCrietria(trainerPlanner, taskNode); auto folds = GetSubFolderNamesFromNode(tpNode); return folds; } private: const int m_LEVEL = 4; std::shared_ptr m_RootNode; - + + /** + * @brief Returns rule function wrapper to check for specific files at given Result_Folder hierarchy level. + * + * @param level + * @return std::function + */ std::function RuleEngine(int level) { if (level == m_LEVEL - 1) { return [](QString path) { return (QFile::exists(path + QDir::separator() + QString("model_final_checkpoint.model")) && QFile::exists(path + QDir::separator() + QString("model_final_checkpoint.model.pkl")) && QFile::exists(path + QDir::separator() + QString("debug.json"))); }; } if (level == m_LEVEL - 2) { return [](QString path) { return QFile::exists(path + QDir::separator() + QString("plans.pkl")); }; } else { return [](QString /*path*/) { return true; }; } } /** * @brief Iterates through the root node and returns the sub FolderNode object Matching Name Crietria * * @param queryName * @param parentNode * @return std::shared_ptr */ std::shared_ptr GetSubNodeMatchingNameCrietria(const QString &queryName, std::shared_ptr parentNode) { std::shared_ptr retNode; std::vector> subNodes = parentNode->subFolders; for (std::shared_ptr node : subNodes) { if (node->name == queryName) { retNode = node; break; } } return retNode; } /** * @brief Returns the sub folder names for a folder node object. Template function, * type can be any of stl or Qt containers which supports push_back call. * * @tparam T * @param std::shared_ptr * @return T (any of stl or Qt containers which supports push_back call) */ template T GetSubFolderNamesFromNode(const std::shared_ptr parent) { T folders; std::vector> subNodes = parent->subFolders; for (std::shared_ptr folder : subNodes) { folders.push_back(folder->name); } return folders; } /** * @brief Iterates through the sub folder hierarchy upto a level provided * and create a tree structure. * * @param parent * @param level */ void InitDirs(std::shared_ptr parent, int level) { QString searchFolder = parent->path + QDir::separator() + parent->name; auto rules = RuleEngine(level); auto subFolders = FetchFoldersFromDir(searchFolder, rules); level++; foreach (QString folder, subFolders) { std::shared_ptr fp = std::make_shared(); fp->path = searchFolder; fp->name = folder; if (level < this->m_LEVEL) { InitDirs(fp, level); } parent->subFolders.push_back(fp); } } /** * @brief Iterates through the sub folder hierarchy upto a level provided * and clears the sub folder std::vector from each node. * * @param parent * @param level */ void DeleteDirs(std::shared_ptr parent, int level) { level++; for (std::shared_ptr subFolder : parent->subFolders) { if (level < m_LEVEL) { DeleteDirs(subFolder, level); } parent->subFolders.clear(); } } /** * @brief Template function to fetch all folders inside a given path. * The type can be any of stl or Qt containers which supports push_back call. * * @tparam T * @param path * @return T */ template T FetchFoldersFromDir(const QString &path, std::function callback) { T folders; for (QDirIterator it(path, QDir::AllDirs, QDirIterator::NoIteratorFlags); it.hasNext();) { it.next(); if (!it.fileName().startsWith('.') && callback(it.filePath())) { folders.push_back(it.fileName()); } } return folders; } }; #endif