diff --git a/Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox b/Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox
index 86e8fa6f2c..a059780254 100644
--- a/Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox
+++ b/Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox
@@ -1,84 +1,84 @@
/**
\page PluginListPage MITK Plugin Manuals
The plugins and bundles provide much of the extended functionality of MITK. Each encapsulates a solution to a problem and associated features. This way one can easily assemble the necessary capabilites for a workflow without adding a lot of bloat, by combining plugins as needed.
\subpage PluginListGeneralPage
- \ref org_mitk_views_basicimageprocessing
- \ref org_mitk_views_datamanager
- \ref org_mitk_editors_dicombrowser
- \ref org_mitk_gui_qt_dicominspector
- \ref org_mitk_gui_qt_flowapplication
- \ref org_mitk_views_imagecropper
- \ref org_mitk_views_imagenavigator
- \ref org_blueberry_views_logview
- \ref org_mitk_views_matchpoint_algorithm_browser
- \ref org_mitk_views_matchpoint_algorithm_control
- \ref org_mitk_views_matchpoint_evaluator
- \ref org_mitk_views_matchpoint_framereg
- \ref org_mitk_views_matchpoint_manipulator
- \ref org_mitk_views_matchpoint_mapper
- \ref org_mitk_views_matchpoint_visualizer
- \ref org_mitk_gui_qt_measurementtoolbox
- \ref org_mitk_views_moviemaker
- \ref org_mitk_views_multilabelsegmentation
- \ref org_mitk_views_pointsetinteraction
- \ref org_mitk_gui_qt_python
- \ref org_mitk_gui_qt_remeshing
- \ref org_mitk_views_screenshotmaker
- \ref org_mitk_views_segmentation
- \ref org_mitk_gui_qt_flow_segmentation
- \ref org_mitk_gui_qt_viewnavigator
- \ref org_mitk_views_volumevisualization
- \ref org_mitk_views_properties
\subpage PluginListSpecificPage
- \ref org_mitk_gui_qt_aicpregistration
- \ref org_mitk_gui_qt_cest
- \ref org_mitk_gui_qt_classificationsegmentation
- \ref org_mitk_views_cmdlinemodules
- \ref org_mitk_views_pharmacokinetics_concentration_mri
- \ref org_mitk_views_pharmacokinetics_mri
- - \ref org_mitk_gui_qt_pharmacokinetics_pet
+ - \ref org_mitk_views_pharmacokinetics_pet
- \ref org_mitk_gui_qt_eventrecorder
- \ref org_mitk_gui_qt_examples
- \ref org_mitk_gui_qt_geometrytools
- \ref org_mitk_gui_qt_igtexample
- \ref org_mitk_gui_qt_igtlplugin
- \ref org_mitk_gui_qt_igttracking
- \ref org_mitk_gui_qt_igttrackingsemiautomaticmeasurement
- \ref org_mitk_views_imagestatistics
- \ref org_mitk_gui_qt_lasercontrol
- \ref org_mitk_views_fit_demo
- \ref org_mitk_gui_qt_fit_genericfitting
- \ref org_mitk_views_fit_inspector
- \ref org_mitkexamplesopencv
- \ref org_mitk_gui_qt_overlaymanager
- \ref org_mitk_gui_qt_mitkphenotyping
- \ref org_mitk_gui_qt_photoacoustics_pausmotioncompensation
- \ref org_mitk_example_gui_pcaexample
- \ref org_mitk_gui_qt_preprocessing_resampling
- \ref org_mitk_views_pharmacokinetics_curvedescriptor
- \ref org_mitk_views_photoacoustics_imageprocessing
- \ref org_mitk_gui_qt_pharmacokinetics_simulation
- \ref org_mitk_gui_qt_pointsetinteractionmultispectrum
- \ref org_mitk_gui_qt_renderwindowmanager
- \ref org_mitk_gui_qt_photoacoustics_spectralunmixing
- \ref org_mitk_gui_qt_spectrocamrecorder
- \ref org_surfacematerialeditor
- \ref org_toftutorial
- \ref org_blueberry_ui_qt_objectinspector
- \ref org_mitk_gui_qt_ultrasound
- \ref org_mitk_gui_qt_igt_app_echotrack
- \ref org_mitk_gui_qt_xnat
*/
diff --git a/Documentation/Doxygen/2-UserManual/MITKPluginSpecificManualsList.dox b/Documentation/Doxygen/2-UserManual/MITKPluginSpecificManualsList.dox
index efa68b94a4..4b49b429dd 100644
--- a/Documentation/Doxygen/2-UserManual/MITKPluginSpecificManualsList.dox
+++ b/Documentation/Doxygen/2-UserManual/MITKPluginSpecificManualsList.dox
@@ -1,45 +1,45 @@
/**
\page PluginListSpecificPage List of Application-specific Plugins
\li \subpage org_mitk_gui_qt_aicpregistration
\li \subpage org_mitk_gui_qt_cest
\li \subpage org_mitk_gui_qt_classificationsegmentation
\li \subpage org_mitk_gui_qt_flowapplication
\li \subpage org_mitk_views_cmdlinemodules
\li \subpage org_mitk_views_pharmacokinetics_concentration_mri
\li \subpage org_mitk_views_pharmacokinetics_mri
- \li \subpage org_mitk_gui_qt_pharmacokinetics_pet
+ \li \subpage org_mitk_views_pharmacokinetics_pet
\li \subpage org_mitk_gui_qt_eventrecorder
\li \subpage org_mitk_gui_qt_examples
\li \subpage org_mitk_gui_qt_geometrytools
\li \subpage org_mitk_gui_qt_igtexample
\li \subpage org_mitk_gui_qt_igtlplugin
\li \subpage org_mitk_gui_qt_igttracking
\li \subpage org_mitk_gui_qt_igttrackingsemiautomaticmeasurement
\li \subpage org_mitk_views_imagestatistics
\li \subpage org_mitk_gui_qt_lasercontrol
\li \subpage org_mitk_views_fit_demo
\li \subpage org_mitk_gui_qt_fit_genericfitting
\li \subpage org_mitk_views_fit_inspector
\li \subpage org_mitkexamplesopencv
\li \subpage org_mitk_gui_qt_overlaymanager
\li \subpage org_mitk_gui_qt_mitkphenotyping
\li \subpage org_mitk_gui_qt_photoacoustics_pausmotioncompensation
\li \subpage org_mitk_example_gui_pcaexample
\li \subpage org_mitk_gui_qt_preprocessing_resampling
\li \subpage org_mitk_views_pharmacokinetics_curvedescriptor
\li \subpage org_mitk_views_photoacoustics_imageprocessing
\li \subpage org_mitk_gui_qt_pharmacokinetics_simulation
\li \subpage org_mitk_gui_qt_pointsetinteractionmultispectrum
\li \subpage org_mitk_gui_qt_renderwindowmanager
\li \subpage org_mitk_gui_qt_photoacoustics_spectralunmixing
\li \subpage org_mitk_gui_qt_spectrocamrecorder
\li \subpage org_surfacematerialeditor
\li \subpage org_blueberry_ui_qt_objectinspector
\li \subpage org_toftutorial
\li \subpage org_mitk_gui_qt_ultrasound
\li \subpage org_mitk_gui_qt_igt_app_echotrack
\li \subpage org_mitk_gui_qt_xnat
*/
\ No newline at end of file
diff --git a/Plugins/org.mitk.gui.qt.pharmacokinetics.pet/documentation/UserManual/Manual.dox b/Plugins/org.mitk.gui.qt.pharmacokinetics.pet/documentation/UserManual/Manual.dox
index f635ced169..feb1aa49d5 100644
--- a/Plugins/org.mitk.gui.qt.pharmacokinetics.pet/documentation/UserManual/Manual.dox
+++ b/Plugins/org.mitk.gui.qt.pharmacokinetics.pet/documentation/UserManual/Manual.dox
@@ -1,46 +1,46 @@
/**
-\page org_mitk_gui_qt_pharmacokinetics_pet The Dynamic PET DataFit View
+\page org_mitk_views_pharmacokinetics_pet The Dynamic PET DataFit View
\imageMacro{pharmacokinetics_pet_doc.svg,"Icon of the DCE MR Perfusion View",3.0}
\tableofcontents
\section FIT_PET_Overview Overview
Pharmacokinetic analysis of concentration time curves is also of interest in the context of dynamic PET acquisition over the accumulation of a radioactive tracer in tissue.
\section FIT_PET_Contact Contact information
This plug-in is being developed by Charlotte Debus and the SIDT group (Software development for Integrated Diagnostics
and Therapy) at the German Cancer Research Center (DKFZ).
If you have any questions, need support, find a bug or have a feature request, feel free to contact us at www.mitk.org.
\subsection FIT_PET_Cite Citation information
If you use the view for your research please cite our work as reference:\n\n
Debus C and Floca R, Ingrisch M, Kompan I, Maier-Hein K, Abdollahi A, Nolden M, MITK-ModelFit: generic open-source framework for model fits and their exploration in medical imaging – design, implementation and application on the example of DCE-MRI (arXiv:1807.07353)
\section FIT_PET_General General information
All models require definition of the arterial tracer concentration, i.e. the AIF. For AIF definition see section 3. Instead of the hematocrit level, the whole blood to plasma correction value needs to be specified. The literature value commonly used is 0.1
Since PET images are already in concentration units of activity per volume ([Bq/ml], translates to number of nuclei per volume), no conversion of signal intensities to concentration is offered in the plugin. If, however, conversion of the 4D images to standard uptake values (SUV) is desired, this can be performed with the separate PET SUV calculation plugin.
Start parameters and parameter constraints can be defined in the same manner as for the DCE tool.
\subsection FIT_PET_General_models Supported models
The PET dynamic plugin works in analogy to the DCE MRI perfusion plugin. It currently supports the following compartmental models:
- One tissue compartment model (without blood volume VB)
- Extended one tissue compartment model (with blood volume VB)
- Two tissue compartment model (with blood volume)
- Two tissue compartment model for FDG (without back exchange k4)
\section FIT_PET_Settings Model Settings
\subsection FIT_PET_Settings_start Start parameter
In cases of noisy data it can be useful to define the initial starting values of the parameter estimates, at which optimization starts, in order to prevent optimization results in local optima.
Each model has default scalar values (applied to every voxel) for initial values of each parameter, however these can be adjusted.
Moreover, initial values can also be defined locally for each individual voxel via starting value images.
\subsection FIT_PET_Settings_constraint Constraint settings
To limit the fitting search space and to exclude unphysical/illogical results for model parameter estimates, constraints to individual parameters as well as combinations can be imposed.
Each model has default constraints, however, new ones can be defined or removed by the + and – buttons in the table.
The first column specifies the parameter(s) involved in the constraint (if multiple selected, their sum will be used) by selection in the drop down menu.
The second column defines whether the constraints defines an upper or lower boundary.
Value and Width define the actual constraint value, that should not be crossed, and a certain tolerance width.
*/
diff --git a/Plugins/org.mitk.gui.qt.pharmacokinetics.pet/plugin.xml b/Plugins/org.mitk.gui.qt.pharmacokinetics.pet/plugin.xml
index aaf2b2ee75..8ac3ef9396 100644
--- a/Plugins/org.mitk.gui.qt.pharmacokinetics.pet/plugin.xml
+++ b/Plugins/org.mitk.gui.qt.pharmacokinetics.pet/plugin.xml
@@ -1,12 +1,12 @@
-