Merge remote-tracking branch 'origin/T22228-PApluginIntegrationSeptember' into…
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Merge remote-tracking branch 'origin/T22228-PApluginIntegrationSeptember' into T22228-PApluginIntegration2018

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• kirchnth	Authored on Jan 10 2018, 6:49 PM
• kirchnth	Pushed on Jan 10 2018, 6:16 PM

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rMITK03e0c46539ce: included and linked PA documentation files
rMITK41b44de83ee6: Merge branch 'T24021-fix-test'

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• kirchnth committed rMITK0bd298eb050a: Merge remote-tracking branch 'origin/T22228-PApluginIntegrationSeptember' into… (authored by • kirchnth).Jan 10 2018, 6:49 PM

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This commit merges a very large number of changes. Only the first 50 are shown.

03e0c46539ce included and linked PA documentation files
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b187bc4a4acf just some typecasting to be sure
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a74121de5c77 Added a safeguard to make sure we dont try to allocate more memory than the GPU…
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8f09d9e24fde Some documentation reordered GUI
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9766fbd5455c Finally fixed a GPU error which made it impossible to use more than 256…
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b436aa1454e2 more manual hid the Bmode on GPU option
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26cdbfbd1138 no more crashes when setting tukey alpha to 0 extended manual
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f2e26faa8ca0 writing manual
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6943a30f26ef 2d images should be now possible to process too
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e7a1ebda4a10 GUI fix
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724176bd208b Batch fixes
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f86d7b706a2e Merge branch 'T22228-PApluginIntegrationSeptember' of https://phabricator.mitk.
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cf9dfa097d38 reviewed an equality check for some parameters
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d45a9fdedf9f Serperated signed DMAS (sDMAS) and DMAS into two seperate filters on both CPU…
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66e05099013a Batching the Chunks works now
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f5a6e986fa57 GUI fixes deleted the controls to crop slices of images
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e5b615219e55 fixed an error where buffer size was not updated
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741d73d91a06 fixed an error when setting boundaries for crop filter
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baaa4d4a31d0 the chunked openCL execution waits for 16 chunks to finish until it queues the…
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b343b1cb4e5b introduced chunked calculation for the UsedLinesCalculation
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01f7b3085bf1 program uses now less memory for delay calculation
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9ce68418f58b Merge branch 'T22228-PApluginIntegrationSeptember' of https://phabricator.mitk.
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dad40f63904d changed vertical interpolation for GPU beamforming
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49cc46a954b5 DMAS preserves now sign of incoming signal
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c3b8cec6fcdb Merge branch 'T22228-PApluginIntegrationSeptember' of https://phabricator.mitk.
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e817a977f369 deleted debugging messages fixed a compiler specific command
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c7f0aebda30d changed standard values in gui
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d5e68239c4de fixed an error with spherical delays on GPU added a lot of typecasts in CPU code
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39629379e260 fixed typo in delay calc
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5bd7a6952ffa Added a way to crop away slices, fixed useless comments
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a8a3f1dd9a70 quick fixes of linux specific compile errors
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0a47615226ca fixed issue with images being overwritten
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de0d83da10af Fixed an error where changes in beamforming parameteres were not registered…
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af90e07e3c7f Added documentation for the BMode filter class. In thr Photoacoustic Algorithms…
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cbd6129c9bcf Some more documentation
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6828ed2cc6fc For the sake of performance of single-image beamforming, lots of unnecessary…
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4fa240cd31e0 started writing documentation, some refactoring
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1062b7e6ad69 Added a function to the openCL module to get the available global memory size
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5f357e9e5c3b set all memory size parameters when creating buffers to size_t, to avoid…
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ce35fc3511f5 DMAS typo fix
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eb4d36299549 deleting unneeded classes
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98562f20e335 Merge branch 'T23200-fixOCLinconsistencies' into T22228…
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fb7ff0de88d3 fixed missing kernel arguments broke DMAS changed delay calculation to a less…
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4d9c706bef30 Merge branch 'T23200-fixOCLinconsistencies' into T22228…
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e292e2c92d2a output dimensions for openCL filter did never updated; fixed that issue
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2fac215c038c Merge branch 'T22228-PAplugin' into T22228-PApluginIntegrationSeptember
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451a1e9ffa6b removed gcc compile warning
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ae3124301393 Merge branch 'T23200-fixOCLinconsistencies' into T22228-PAplugin
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3964e5c4d806 Greatly increased performance by: selectively recreating buffers only when…
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705e9a0edd06 some refactoring, changed the directory structure of the module
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Changes (136)
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Path

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Packages

CMake/

BuildConfigurations/

camiPhotoacousticsWorkstation.cmake

O1: MITK Reviewer Group I

FindOpenCL.cmake

O1: MITK Reviewer Group I

Documentation/

Doxygen/

2-UserManual/

MITKPluginManualsList.dox

3-DeveloperManual/

Toolkit/

ModuleManuals/

MITKModuleManualsList.dox

Modules/

OpenCL/

files.cmake

mitkOclDataSet.cpp

mitkOclDataSet.h

mitkOclDataSetFilter.cpp

mitkOclDataSetFilter.h

mitkOclDataSetToDataSetFilter.cpp

mitkOclDataSetToDataSetFilter.h

mitkOclFilter.cpp

mitkOclFilter.h

mitkOclImageToImageFilter.cpp

mitkOclUtils.cpp

mitkOclUtils.h

PhotoacousticsAlgorithms/

itkAnalyticSignalImageFilter.h

itkAnalyticSignalImageFilter.hxx

itkBModeImageFilter.h

itkBModeImageFilter.hxx

itkCurvilinearArraySpecialCoordinatesImage.h

itkCurvilinearArraySpecialCoordinatesImage.hxx

itkFFT1DComplexConjugateToRealImageFilter.h

itkFFT1DComplexConjugateToRealImageFilter.hxx

itkFFT1DComplexToComplexImageFilter.h

itkFFT1DComplexToComplexImageFilter.hxx

itkFFT1DRealToComplexConjugateImageFilter.h

itkFFT1DRealToComplexConjugateImageFilter.hxx

itkRegionFromReferenceImageFilter.h

itkRegionFromReferenceImageFilter.hxx

itkSpectra1DImageFilter.h

itkSpectra1DImageFilter.hxx

itkSpectra1DSupportWindowImageFilter.h

itkSpectra1DSupportWindowImageFilter.hxx

itkSpectra1DSupportWindowToMaskImageFilter.h

itkSpectra1DSupportWindowToMaskImageFilter.hxx

itkTimeGainCompensationImageFilter.h

itkTimeGainCompensationImageFilter.hxx

itkVnlFFT1DComplexConjugateToRealImageFilter.h

itkVnlFFT1DComplexConjugateToRealImageFilter.hxx

itkVnlFFT1DComplexToComplexImageFilter.h

itkVnlFFT1DComplexToComplexImageFilter.hxx

itkVnlFFT1DRealToComplexConjugateImageFilter.h

itkVnlFFT1DRealToComplexConjugateImageFilter.hxx

OCL

mitkPhotoacousticBModeFilter.cpp

mitkPhotoacousticBModeFilter.h

mitkPhotoacousticOCLBeamformer.cpp

mitkPhotoacousticOCLBeamformer.h

itkPhotoacousticBModeImageFilter.h

itkPhotoacousticBModeImageFilter.hxx

mitkPhotoacousticBeamformingFilter.cpp

mitkPhotoacousticBeamformingFilter.h

	ITKFilter/
	Algorithms/

ITKUltrasound

LICENSE

README.rst

itkAnalyticSignalImageFilter.h

itkAnalyticSignalImageFilter.hxx

itkBModeImageFilter.h

itkBModeImageFilter.hxx

itkCurvilinearArraySpecialCoordinatesImage.h

itkCurvilinearArraySpecialCoordinatesImage.hxx

itkFFT1DComplexConjugateToRealImageFilter.h

itkFFT1DComplexConjugateToRealImageFilter.hxx

itkFFT1DComplexToComplexImageFilter.h

itkFFT1DComplexToComplexImageFilter.hxx

itkFFT1DRealToComplexConjugateImageFilter.h

itkFFT1DRealToComplexConjugateImageFilter.hxx

itkRegionFromReferenceImageFilter.h

itkRegionFromReferenceImageFilter.hxx

itkSpectra1DImageFilter.h

itkSpectra1DImageFilter.hxx

itkSpectra1DSupportWindowImageFilter.h

itkSpectra1DSupportWindowImageFilter.hxx

itkSpectra1DSupportWindowToMaskImageFilter.h

itkSpectra1DSupportWindowToMaskImageFilter.hxx

itkTimeGainCompensationImageFilter.h

itkTimeGainCompensationImageFilter.hxx

itkVnlFFT1DComplexConjugateToRealImageFilter.h

itkVnlFFT1DComplexConjugateToRealImageFilter.hxx

itkVnlFFT1DComplexToComplexImageFilter.h

itkVnlFFT1DComplexToComplexImageFilter.hxx

itkVnlFFT1DRealToComplexConjugateImageFilter.h

itkVnlFFT1DRealToComplexConjugateImageFilter.hxx

itkPhotoacousticBModeImageFilter.h

itkPhotoacousticBModeImageFilter.hxx

Resources/

UsedLinesCalculation.cl

mitkPhotoacousticBModeFilter.h

mitkPhotoacousticOCLBeamformingFilter.h

mitkPhotoacousticOCLDelayCalculation.h

mitkPhotoacousticOCLUsedLinesCalculation.h

mitkPhotoacousticBeamformingFilter.h

mitkPhotoacousticBeamformingSettings.h

mitkPhotoacousticImage.h

mitkPhotoacousticImage.cpp

mitkPhotoacousticImage.h

source

OpenCLFilter

mitkPhotoacousticBModeFilter.cpp

mitkPhotoacousticOCLBeamformingFilter.cpp

mitkPhotoacousticOCLDelayCalculation.cpp

mitkPhotoacousticOCLUsedLinesCalculation.cpp

mitkPhotoacousticBeamformingFilter.cpp

	source/

mitkPhotoacousticImage.cpp

Plugins/

org.mitk.gui.qt.photoacoustics.imageprocessing/

CMakeLists.txt

documentation/

UserManual/

Manual.dox

QmikPhotoacousticsImageProcessing_DataManager.png

QmikPhotoacousticsImageProcessing_Settings.png

icon.xpm

pai.png

resources/

pai.png

src/

internal/

PAImageProcessing.cpp

PAImageProcessing.h

PAImageProcessingControls.ui

rMITK0bd298eb050a

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CMake/FindOpenCL.cmake

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Modules/PhotoacousticsAlgorithms/include/mitkPhotoacousticImage.h

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Modules/PhotoacousticsAlgorithms/mitkPhotoacousticImage.cpp

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Merge remote-tracking branch 'origin/T22228-PApluginIntegrationSeptember' into…0bd298eb050aActions

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rMITK0bd298eb050a

CMake/BuildConfigurations/camiPhotoacousticsWorkstation.cmake

CMake/FindOpenCL.cmake

Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox

Documentation/Doxygen/3-DeveloperManual/Toolkit/ModuleManuals/MITKModuleManualsList.dox

Modules/OpenCL/files.cmake

Modules/OpenCL/mitkOclDataSet.cpp

Modules/OpenCL/mitkOclDataSet.h

Modules/OpenCL/mitkOclDataSetFilter.cpp

Modules/OpenCL/mitkOclDataSetFilter.h

Modules/OpenCL/mitkOclDataSetToDataSetFilter.cpp

Modules/OpenCL/mitkOclDataSetToDataSetFilter.h

Modules/OpenCL/mitkOclFilter.cpp

Modules/OpenCL/mitkOclFilter.h

Modules/OpenCL/mitkOclImageToImageFilter.cpp

Modules/OpenCL/mitkOclUtils.cpp

Modules/OpenCL/mitkOclUtils.h

Modules/PhotoacousticsAlgorithms/Algorithms

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/LICENSE

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/README.rst

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkAnalyticSignalImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkAnalyticSignalImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkBModeImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkBModeImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkCurvilinearArraySpecialCoordinatesImage.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkCurvilinearArraySpecialCoordinatesImage.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkFFT1DComplexConjugateToRealImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkFFT1DComplexConjugateToRealImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkFFT1DComplexToComplexImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkFFT1DComplexToComplexImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkFFT1DRealToComplexConjugateImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkFFT1DRealToComplexConjugateImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkRegionFromReferenceImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkRegionFromReferenceImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkSpectra1DImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkSpectra1DImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkSpectra1DSupportWindowImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkSpectra1DSupportWindowImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkSpectra1DSupportWindowToMaskImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkSpectra1DSupportWindowToMaskImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkTimeGainCompensationImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkTimeGainCompensationImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkVnlFFT1DComplexConjugateToRealImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkVnlFFT1DComplexConjugateToRealImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkVnlFFT1DComplexToComplexImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkVnlFFT1DComplexToComplexImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkVnlFFT1DRealToComplexConjugateImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/ITKUltrasound/itkVnlFFT1DRealToComplexConjugateImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/OCL

Modules/PhotoacousticsAlgorithms/Algorithms/OCL/mitkPhotoacousticBModeFilter.cpp

Modules/PhotoacousticsAlgorithms/Algorithms/OCL/mitkPhotoacousticBModeFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/OCL/mitkPhotoacousticOCLBeamformer.cpp

Modules/PhotoacousticsAlgorithms/Algorithms/OCL/mitkPhotoacousticOCLBeamformer.h

Modules/PhotoacousticsAlgorithms/Algorithms/itkPhotoacousticBModeImageFilter.h

Modules/PhotoacousticsAlgorithms/Algorithms/itkPhotoacousticBModeImageFilter.hxx

Modules/PhotoacousticsAlgorithms/Algorithms/mitkPhotoacousticBeamformingFilter.cpp

Modules/PhotoacousticsAlgorithms/Algorithms/mitkPhotoacousticBeamformingFilter.h

Modules/PhotoacousticsAlgorithms/CMakeLists.txt

Modules/PhotoacousticsAlgorithms/Documentation/doxygen/PAModule.dox

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/LICENSE

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/README.rst

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkAnalyticSignalImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkAnalyticSignalImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkBModeImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkBModeImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkCurvilinearArraySpecialCoordinatesImage.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkCurvilinearArraySpecialCoordinatesImage.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DComplexConjugateToRealImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DComplexConjugateToRealImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DComplexToComplexImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DComplexToComplexImageFilter.hxx

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DRealToComplexConjugateImageFilter.h

Modules/PhotoacousticsAlgorithms/ITKFilter/ITKUltrasound/itkFFT1DRealToComplexConjugateImageFilter.hxx

Merge remote-tracking branch 'origin/T22228-PApluginIntegrationSeptember' into…
0bd298eb050a
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