diff --git a/CMakeLists.txt b/CMakeLists.txt
index feac085b46..b841516446 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -1,855 +1,863 @@
 cmake_minimum_required(VERSION 2.8.4)
 
 #-----------------------------------------------------------------------------
 # Set a default build type if none was specified
 #-----------------------------------------------------------------------------
 
 if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
   message(STATUS "Setting build type to 'Debug' as none was specified.")
   set(CMAKE_BUILD_TYPE Debug CACHE STRING "Choose the type of build." FORCE)
 
   # Set the possible values of build type for cmake-gui
   set_property(CACHE CMAKE_BUILD_TYPE PROPERTY 
                STRINGS "Debug" "Release" "MinSizeRel" "RelWithDebInfo")
 endif()
 
 #-----------------------------------------------------------------------------
 # Superbuild Option - Enabled by default
 #-----------------------------------------------------------------------------
 
 option(MITK_USE_SUPERBUILD "Build MITK and the projects it depends on via SuperBuild.cmake." ON)
 
 if(MITK_USE_SUPERBUILD)
   project(MITK-superbuild)
   set(MITK_SOURCE_DIR ${PROJECT_SOURCE_DIR})
   set(MITK_BINARY_DIR ${PROJECT_BINARY_DIR})
 else()
   project(MITK)
 endif()
 
 #-----------------------------------------------------------------------------
 # Warn if source or build path is too long
 #-----------------------------------------------------------------------------
 
 if(WIN32)
   set(_src_dir_length_max 50)
   set(_bin_dir_length_max 50)
   if(MITK_USE_SUPERBUILD)
     set(_src_dir_length_max 43) # _src_dir_length_max - strlen(ITK-src)
     set(_bin_dir_length_max 40) # _bin_dir_length_max - strlen(MITK-build)
   endif()
   
   string(LENGTH "${MITK_SOURCE_DIR}" _src_n)
   string(LENGTH "${MITK_BINARY_DIR}" _bin_n)
   
   # The warnings should be converted to errors
   if(_src_n GREATER _src_dir_length_max)
     message(WARNING "MITK source code directory path length is too long (${_src_n} > ${_src_dir_length_max})."
                     "Please move the MITK source code directory to a directory with a shorter path." )
   endif()
   if(_bin_n GREATER _bin_dir_length_max)
     message(WARNING "MITK build directory path length is too long (${_bin_n} > ${_bin_dir_length_max})."
                     "Please move the MITK build directory to a directory with a shorter path." )
   endif()
 endif()
 
 #-----------------------------------------------------------------------------
 # See http://cmake.org/cmake/help/cmake-2-8-docs.html#section_Policies for details
 #-----------------------------------------------------------------------------
 
 set(project_policies
   CMP0001 # NEW: CMAKE_BACKWARDS_COMPATIBILITY should no longer be used.
   CMP0002 # NEW: Logical target names must be globally unique.
   CMP0003 # NEW: Libraries linked via full path no longer produce linker search paths.
   CMP0004 # NEW: Libraries linked may NOT have leading or trailing whitespace.
   CMP0005 # NEW: Preprocessor definition values are now escaped automatically.
   CMP0006 # NEW: Installing MACOSX_BUNDLE targets requires a BUNDLE DESTINATION.
   CMP0007 # NEW: List command no longer ignores empty elements.
   CMP0008 # NEW: Libraries linked by full-path must have a valid library file name.
   CMP0009 # NEW: FILE GLOB_RECURSE calls should not follow symlinks by default.
   CMP0010 # NEW: Bad variable reference syntax is an error.
   CMP0011 # NEW: Included scripts do automatic cmake_policy PUSH and POP.
   CMP0012 # NEW: if() recognizes numbers and boolean constants.
   CMP0013 # NEW: Duplicate binary directories are not allowed.
   CMP0014 # NEW: Input directories must have CMakeLists.txt
   )
 foreach(policy ${project_policies})
   if(POLICY ${policy})
     cmake_policy(SET ${policy} NEW)
   endif()
 endforeach()
 
 #-----------------------------------------------------------------------------
 # Update CMake module path
 #------------------------------------------------------------------------------
 
 set(CMAKE_MODULE_PATH
   ${MITK_SOURCE_DIR}/CMake
   ${CMAKE_MODULE_PATH}
   )
 
 #-----------------------------------------------------------------------------
 # CMake function(s) and macro(s)
 #-----------------------------------------------------------------------------
 
 include(mitkMacroEmptyExternalProject)
 include(mitkFunctionGenerateProjectXml)
 include(mitkFunctionSuppressWarnings)
 
 SUPPRESS_VC_DEPRECATED_WARNINGS()
 
 #-----------------------------------------------------------------------------
 # Output directories.
 #-----------------------------------------------------------------------------
 
 foreach(type LIBRARY RUNTIME ARCHIVE)
   # Make sure the directory exists
   if(DEFINED MITK_CMAKE_${type}_OUTPUT_DIRECTORY
      AND NOT EXISTS ${MITK_CMAKE_${type}_OUTPUT_DIRECTORY})
     message("Creating directory MITK_CMAKE_${type}_OUTPUT_DIRECTORY: ${MITK_CMAKE_${type}_OUTPUT_DIRECTORY}")
     file(MAKE_DIRECTORY "${MITK_CMAKE_${type}_OUTPUT_DIRECTORY}")
   endif()
 
   if(MITK_USE_SUPERBUILD)
     set(output_dir ${MITK_BINARY_DIR}/bin)
     if(NOT DEFINED MITK_CMAKE_${type}_OUTPUT_DIRECTORY)
       set(MITK_CMAKE_${type}_OUTPUT_DIRECTORY ${MITK_BINARY_DIR}/MITK-build/bin)
     endif()
   else()
     if(NOT DEFINED MITK_CMAKE_${type}_OUTPUT_DIRECTORY)
       set(output_dir ${MITK_BINARY_DIR}/bin)
     else()
       set(output_dir ${MITK_CMAKE_${type}_OUTPUT_DIRECTORY})
     endif()
   endif()
   set(CMAKE_${type}_OUTPUT_DIRECTORY ${output_dir} CACHE INTERNAL "Single output directory for building all libraries.")
   mark_as_advanced(CMAKE_${type}_OUTPUT_DIRECTORY)
 endforeach()
 
 #-----------------------------------------------------------------------------
 # Additional MITK Options (also shown during superbuild)
 #-----------------------------------------------------------------------------
 
 option(BUILD_SHARED_LIBS "Build MITK with shared libraries" ON)
 option(WITH_COVERAGE "Enable/Disable coverage" OFF)
 option(BUILD_TESTING "Test the project" ON)
 
 option(MITK_BUILD_ALL_APPS "Build all MITK applications" OFF)
 option(MITK_BUILD_TUTORIAL "Build the MITK tutorial" ON)
 option(MITK_USE_Boost "Use the Boost C++ library" OFF)
 option(MITK_USE_BLUEBERRY "Build the BlueBerry platform" ON)
 option(MITK_USE_CTK "Use CTK in MITK" ${MITK_USE_BLUEBERRY})
 option(MITK_USE_QT "Use Nokia's Qt library" ${MITK_USE_CTK})
 option(MITK_USE_DCMTK "EXEPERIMENTAL, superbuild only: Use DCMTK in MITK" OFF)
 option(MITK_USE_OpenCV "Use Intel's OpenCV library" OFF)
 option(MITK_USE_Python "Use Python wrapping in MITK" OFF)
 set(MITK_USE_CableSwig ${MITK_USE_Python})
 
 mark_as_advanced(MITK_BUILD_ALL_APPS
                  MITK_USE_CTK
                  MITK_USE_DCMTK
                 )
 
 
 if(MITK_USE_Boost)
   option(MITK_USE_SYSTEM_Boost "Use the system Boost" OFF)
   set(MITK_USE_Boost_LIBRARIES "" CACHE STRING "A semi-colon separated list of required Boost libraries")
 endif()
 
 if(MITK_USE_BLUEBERRY)
   option(MITK_BUILD_ALL_PLUGINS "Build all MITK plugins" OFF)
   mark_as_advanced(MITK_BUILD_ALL_PLUGINS)
   
   if(NOT MITK_USE_CTK)
     message("Forcing MITK_USE_CTK to ON because of MITK_USE_BLUEBERRY")
     set(MITK_USE_CTK ON CACHE BOOL "Use CTK in MITK" FORCE)
   endif()
 endif()
   
 if(MITK_USE_CTK AND NOT MITK_USE_QT)
   message("Forcing MITK_USE_QT to ON because of MITK_USE_CTK")
   set(MITK_USE_QT ON CACHE BOOL "Use Nokia's Qt library in MITK" FORCE)
 endif()
 
 if(MITK_USE_QT)
   # find the package at the very beginning, so that QT4_FOUND is available
   find_package(Qt4 4.6.2 REQUIRED)
 endif()
 
 
 # Customize the default pixel types for multiplex macros
 
 set(MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES
     "int, unsigned int, short, unsigned short, char, unsigned char"
     CACHE STRING "List of integral pixel types used in AccessByItk and InstantiateAccessFunction macros")
 
 set(MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES
     "double, float"
     CACHE STRING "List of floating pixel types used in AccessByItk and InstantiateAccessFunction macros")
 
 set(MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES
     ""
     CACHE STRING "List of composite pixel types used in AccessByItk and InstantiateAccessFunction macros")
 
 set(MITK_ACCESSBYITK_DIMENSIONS
     "2,3"
     CACHE STRING "List of dimensions used in AccessByItk and InstantiateAccessFunction macros")
 
 mark_as_advanced(MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES
                  MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES
                  MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES
                  MITK_ACCESSBYITK_DIMENSIONS
                 )
 
 # consistency checks
 
 if(NOT MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES)
   set(MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES
       "int, unsigned int, short, unsigned short, char, unsigned char"
       CACHE STRING "List of integral pixel types used in AccessByItk and InstantiateAccessFunction macros" FORCE)
 endif()
 
 if(NOT MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES)
   set(MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES
       "double, float"
       CACHE STRING "List of floating pixel types used in AccessByItk and InstantiateAccessFunction macros" FORCE)
 endif()
 
 if(NOT MITK_ACCESSBYITK_DIMENSIONS)
   set(MITK_ACCESSBYITK_DIMENSIONS
       "2,3"
       CACHE STRING "List of dimensions used in AccessByItk and InstantiateAccessFunction macros")
 endif()
 
 #-----------------------------------------------------------------------------
 # Additional CXX/C Flags
 #-----------------------------------------------------------------------------
 
 set(ADDITIONAL_C_FLAGS "" CACHE STRING "Additional C Flags")
 mark_as_advanced(ADDITIONAL_C_FLAGS)
 set(ADDITIONAL_CXX_FLAGS "" CACHE STRING "Additional CXX Flags")
 mark_as_advanced(ADDITIONAL_CXX_FLAGS)
 
 #-----------------------------------------------------------------------------
 # Project.xml
 #-----------------------------------------------------------------------------
 
 # A list of topologically ordered targets
 set(CTEST_PROJECT_SUBPROJECTS)
 if(MITK_USE_BLUEBERRY)
   list(APPEND CTEST_PROJECT_SUBPROJECTS BlueBerry)
 endif()
 
 list(APPEND CTEST_PROJECT_SUBPROJECTS
   MITK-Core
   MITK-CoreUI
   MITK-IGT
   MITK-ToF
   MITK-DTI
   MITK-Registration
   MITK-Modules # all modules not contained in a specific subproject
   MITK-Plugins # all plugins not contained in a specific subproject
   Unlabeled # special "subproject" catching all unlabeled targets and tests
   )
 
 # Configure CTestConfigSubProject.cmake that could be used by CTest scripts
 configure_file(${MITK_SOURCE_DIR}/CTestConfigSubProject.cmake.in
                ${MITK_BINARY_DIR}/CTestConfigSubProject.cmake)
                
 if(CTEST_PROJECT_ADDITIONAL_TARGETS)
   # those targets will be executed at the end of the ctest driver script
   # and they also get their own subproject label
   set(subproject_list "${CTEST_PROJECT_SUBPROJECTS};${CTEST_PROJECT_ADDITIONAL_TARGETS}")
 else()
   set(subproject_list "${CTEST_PROJECT_SUBPROJECTS}")
 endif()
 
 # Generate Project.xml file expected by the CTest driver script
 mitkFunctionGenerateProjectXml(${MITK_BINARY_DIR} MITK "${subproject_list}" ${MITK_USE_SUPERBUILD})
 
 #-----------------------------------------------------------------------------
 # Superbuild script
 #-----------------------------------------------------------------------------
 
 if(MITK_USE_SUPERBUILD)
   include("${CMAKE_CURRENT_SOURCE_DIR}/SuperBuild.cmake")
   return()
 endif()
 
 #*****************************************************************************
 #****************************  END OF SUPERBUILD  ****************************
 #*****************************************************************************
 
 #-----------------------------------------------------------------------------
 # CMake function(s) and macro(s)
 #-----------------------------------------------------------------------------
 
 include(CheckCXXSourceCompiles)
 include(mitkFunctionCheckCompilerFlags)
 include(mitkFunctionGetGccVersion)
 include(MacroParseArguments)
 include(mitkFunctionSuppressWarnings) # includes several functions
 include(mitkFunctionOrganizeSources)
 include(mitkFunctionGetVersion)
 include(mitkFunctionCreateWindowsBatchScript)
 include(mitkFunctionInstallProvisioningFiles)
 include(mitkFunctionCompileSnippets)
 include(mitkMacroCreateModuleConf)
 include(mitkMacroCreateModule)
 include(mitkMacroCheckModule)
 include(mitkMacroCreateModuleTests)
 include(mitkFunctionAddCustomModuleTest)
 include(mitkMacroUseModule)
 include(mitkMacroMultiplexPicType)
 include(mitkMacroInstall)
 include(mitkMacroInstallHelperApp)
 include(mitkMacroInstallTargets)
 include(mitkMacroGenerateToolsLibrary)
 include(mitkMacroGetLinuxDistribution)
 
 #-----------------------------------------------------------------------------
 # Prerequesites
 #-----------------------------------------------------------------------------
 
 find_package(ITK REQUIRED)
 find_package(VTK REQUIRED)
 
 if(ITK_USE_SYSTEM_GDCM)
   find_package(GDCM PATHS ${ITK_GDCM_DIR} REQUIRED)
 endif()
 
 #-----------------------------------------------------------------------------
 # Set MITK specific options and variables (NOT available during superbuild)
 #-----------------------------------------------------------------------------
 
 # ASK THE USER TO SHOW THE CONSOLE WINDOW FOR CoreApp and ExtApp
 option(MITK_SHOW_CONSOLE_WINDOW "Use this to enable or disable the console window when starting MITK GUI Applications" ON)
 mark_as_advanced(MITK_SHOW_CONSOLE_WINDOW)
 
 # TODO: check if necessary
 option(USE_ITKZLIB "Use the ITK zlib for pic compression." ON)
 mark_as_advanced(USE_ITKZLIB)
 
 if(NOT MITK_FAST_TESTING)
   if(DEFINED MITK_CTEST_SCRIPT_MODE 
       AND (MITK_CTEST_SCRIPT_MODE STREQUAL "continuous" OR MITK_CTEST_SCRIPT_MODE STREQUAL "experimental") )
     set(MITK_FAST_TESTING 1)
   endif()
 endif()
 
 #-----------------------------------------------------------------------------
 # Get MITK version info
 #-----------------------------------------------------------------------------
 
 mitkFunctionGetVersion(${MITK_SOURCE_DIR} MITK)
 
 #-----------------------------------------------------------------------------
 # Installation preparation
 #
 # These should be set before any MITK install macros are used
 #-----------------------------------------------------------------------------
 
 # on Mac OSX all BlueBerry plugins get copied into every
 # application bundle (.app directory) specified here
 if(APPLE)
   if(MITK_BUILD_org.mitk.gui.qt.extapplication)
     set(MACOSX_BUNDLE_NAMES ${MACOSX_BUNDLE_NAMES} ExtApp)
   endif()
   if(MITK_BUILD_org.mitk.gui.qt.application)
     set(MACOSX_BUNDLE_NAMES ${MACOSX_BUNDLE_NAMES} CoreApp)
   endif()
   if(MITK_BUILD_org.mitk.gui.qt.diffusionimagingapp)
     set(MACOSX_BUNDLE_NAMES ${MACOSX_BUNDLE_NAMES} mitkDiffusion)
   endif()
 endif(APPLE)
 
 #-----------------------------------------------------------------------------
 # Set symbol visibility Flags
 #-----------------------------------------------------------------------------
 
 # MinGW does not export all symbols automatically, so no need to set flags
 if(CMAKE_COMPILER_IS_GNUCXX AND NOT MINGW)
   set(VISIBILITY_CXX_FLAGS ) #"-fvisibility=hidden -fvisibility-inlines-hidden")
 endif()
 
 #-----------------------------------------------------------------------------
 # Set coverage Flags
 #-----------------------------------------------------------------------------
 
 if(WITH_COVERAGE)
   if("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
     set(coverage_flags "-g -fprofile-arcs -ftest-coverage -O0 -DNDEBUG")
     set(COVERAGE_CXX_FLAGS ${coverage_flags})
     set(COVERAGE_C_FLAGS ${coverage_flags})
   endif()
 endif()
 
 #-----------------------------------------------------------------------------
 # MITK C/CXX Flags
 #-----------------------------------------------------------------------------
 
 set(MITK_C_FLAGS "${COVERAGE_C_FLAGS} ${ADDITIONAL_C_FLAGS}")
 set(MITK_CXX_FLAGS "${VISIBILITY_CXX_FLAGS} ${COVERAGE_CXX_FLAGS} ${ADDITIONAL_CXX_FLAGS}")
 
 include(mitkSetupC++0xVariables)
 
 set(cflags )
 if(WIN32)
   set(cflags "${cflags} -DPOCO_NO_UNWINDOWS -DWIN32_LEAN_AND_MEAN")
 endif()
 
 if(CMAKE_COMPILER_IS_GNUCXX)
   set(cflags "${cflags} -Wall -Wextra -Wpointer-arith -Winvalid-pch -Wcast-align -Wwrite-strings -D_FORTIFY_SOURCE=2")
 
   mitkFunctionCheckCompilerFlags("-fdiagnostics-show-option" cflags)
   mitkFunctionCheckCompilerFlags("-Wl,--no-undefined" cflags)
   mitkFunctionCheckCompilerFlags("-Wl,--as-needed" cflags)
 
   if(MITK_USE_C++0x)
     mitkFunctionCheckCompilerFlags("-std=c++0x" MITK_CXX_FLAGS)
   endif()
 
   mitkFunctionGetGccVersion(${CMAKE_CXX_COMPILER} GCC_VERSION)
   # With older version of gcc supporting the flag -fstack-protector-all, an extra dependency to libssp.so
   # is introduced. If gcc is smaller than 4.4.0 and the build type is Release let's not include the flag.
   # Doing so should allow to build package made for distribution using older linux distro.
   if(${GCC_VERSION} VERSION_GREATER "4.4.0" OR (CMAKE_BUILD_TYPE STREQUAL "Debug" AND ${GCC_VERSION} VERSION_LESS "4.4.0"))
     mitkFunctionCheckCompilerFlags("-fstack-protector-all" cflags)
   endif()
   if(MINGW)
     # suppress warnings about auto imported symbols
     set(MITK_CXX_FLAGS "-Wl,--enable-auto-import ${MITK_CXX_FLAGS}")
     # we need to define a Windows version
     set(MITK_CXX_FLAGS "-D_WIN32_WINNT=0x0500 ${MITK_CXX_FLAGS}")
   endif()
 
   #set(MITK_CXX_FLAGS "-Woverloaded-virtual -Wold-style-cast -Wstrict-null-sentinel -Wsign-promo ${MITK_CXX_FLAGS}")
   set(MITK_CXX_FLAGS "-Woverloaded-virtual -Wstrict-null-sentinel ${MITK_CXX_FLAGS}")
 endif()
 
 set(MITK_C_FLAGS "${cflags} ${MITK_C_FLAGS}")
 set(MITK_CXX_FLAGS "${cflags} ${MITK_CXX_FLAGS}")
 
 #-----------------------------------------------------------------------------
 # MITK Packages
 #-----------------------------------------------------------------------------
 
 set(MITK_MODULES_PACKAGE_DEPENDS_DIR ${MITK_SOURCE_DIR}/CMake/PackageDepends)
 set(MODULES_PACKAGE_DEPENDS_DIRS ${MITK_MODULES_PACKAGE_DEPENDS_DIR})
 
 #-----------------------------------------------------------------------------
 # Testing
 #-----------------------------------------------------------------------------
 
 if(BUILD_TESTING)
   enable_testing()
   include(CTest)
   mark_as_advanced(TCL_TCLSH DART_ROOT)
 
   option(MITK_ENABLE_GUI_TESTING OFF "Enable the MITK GUI tests")
 
   # Setup file for setting custom ctest vars
   configure_file(
     CMake/CTestCustom.cmake.in
     ${MITK_BINARY_DIR}/CTestCustom.cmake
     @ONLY
     )
 
   # Configuration for the CMake-generated test driver
   set(CMAKE_TESTDRIVER_EXTRA_INCLUDES "#include <stdexcept>")
   set(CMAKE_TESTDRIVER_BEFORE_TESTMAIN "
     try
       {")
   set(CMAKE_TESTDRIVER_AFTER_TESTMAIN "    }
       catch( std::exception & excp )
         {
         fprintf(stderr,\"%s\\n\",excp.what());
         return EXIT_FAILURE;
         }
       catch( ... )
         {
         printf(\"Exception caught in the test driver\\n\");
         return EXIT_FAILURE;
         }
       ")
 
   set(MITK_TEST_OUTPUT_DIR "${MITK_BINARY_DIR}/test_output")
   if(NOT EXISTS ${MITK_TEST_OUTPUT_DIR})
     file(MAKE_DIRECTORY ${MITK_TEST_OUTPUT_DIR})
   endif()
 
   # Test the external project template
   if(MITK_USE_BLUEBERRY)
     include(mitkTestProjectTemplate)
   endif()
 
   # Test the package target
   include(mitkPackageTest)
 endif()
 
 configure_file(mitkTestingConfig.h.in ${MITK_BINARY_DIR}/mitkTestingConfig.h)
 
 #-----------------------------------------------------------------------------
 # MITK_SUPERBUILD_BINARY_DIR
 #-----------------------------------------------------------------------------
 
 # If MITK_SUPERBUILD_BINARY_DIR isn't defined, it means MITK is *NOT* build using Superbuild.
 # In that specific case, MITK_SUPERBUILD_BINARY_DIR should default to MITK_BINARY_DIR
 if(NOT DEFINED MITK_SUPERBUILD_BINARY_DIR)
   set(MITK_SUPERBUILD_BINARY_DIR ${MITK_BINARY_DIR})
 endif()
 
 #-----------------------------------------------------------------------------
 # Compile Utilities and set-up MITK variables
 #-----------------------------------------------------------------------------
 
 include(mitkSetupVariables)
 
   #-----------------------------------------------------------------------------
   # Cleanup
   #-----------------------------------------------------------------------------
 
   file(GLOB _MODULES_CONF_FILES ${PROJECT_BINARY_DIR}/${MODULES_CONF_DIRNAME}/*.cmake)
   if(_MODULES_CONF_FILES)
     file(REMOVE ${_MODULES_CONF_FILES})
   endif()
 
 add_subdirectory(Utilities)
 
 if(MITK_USE_BLUEBERRY)
 
   # We need to hack a little bit because MITK applications may need
   # to enable certain BlueBerry plug-ins. However, these plug-ins
   # are validated separately from the MITK plug-ins and know nothing
   # about potential MITK plug-in dependencies of the applications. Hence
   # we cannot pass the MITK application list to the BlueBerry
   # ctkMacroSetupPlugins call but need to extract the BlueBerry dependencies
   # from the applications and set them explicitly.
 
   include("${CMAKE_CURRENT_SOURCE_DIR}/Applications/AppList.cmake")
 
   foreach(mitk_app ${MITK_APPS})
     # extract target_dir and option_name
     string(REPLACE "^^" "\\;" target_info ${mitk_app})
     set(target_info_list ${target_info})
     list(GET target_info_list 0 target_dir)
     list(GET target_info_list 1 option_name)
     # check if the application is enabled and if target_libraries.cmake exists
     if(${option_name} AND EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/Applications/${target_dir}/target_libraries.cmake")
       include("${CMAKE_CURRENT_SOURCE_DIR}/Applications/${target_dir}/target_libraries.cmake")
       foreach(_target_dep ${target_libraries})
         if(_target_dep MATCHES org_blueberry_)
           string(REPLACE _ . _app_bb_dep ${_target_dep})
           # explicitly set the build option for the BlueBerry plug-in
           set(BLUEBERRY_BUILD_${_app_bb_dep} ON CACHE BOOL "Build the ${_app_bb_dep} plug-in")
         endif()
       endforeach()
     endif()
   endforeach()
 
   set(mbilog_DIR "${mbilog_BINARY_DIR}")
 
   if(MITK_BUILD_ALL_PLUGINS)
     set(BLUEBERRY_BUILD_ALL_PLUGINS ON)
   endif()
 
   add_subdirectory(BlueBerry)
 
   set(BlueBerry_DIR ${CMAKE_CURRENT_BINARY_DIR}/BlueBerry
       CACHE PATH "The directory containing a CMake configuration file for BlueBerry" FORCE)
 
   include(mitkMacroCreateCTKPlugin)
 
 endif()
 
 #-----------------------------------------------------------------------------
 # Set C/CXX Flags for MITK code
 #-----------------------------------------------------------------------------
 
 set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${MITK_CXX_FLAGS}")
 set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${MITK_C_FLAGS}")
 
 if(MITK_USE_QT)
   add_definitions(-DQWT_DLL)
 endif()
 
 #-----------------------------------------------------------------------------
 # Add custom targets representing CDash subprojects
 #-----------------------------------------------------------------------------
 
 foreach(subproject ${CTEST_PROJECT_SUBPROJECTS})
   if(NOT TARGET ${subproject} AND NOT subproject MATCHES "Unlabeled")
     add_custom_target(${subproject})
   endif()
 endforeach()
 
 #-----------------------------------------------------------------------------
 # Add subdirectories
 #-----------------------------------------------------------------------------
 
 link_directories(${MITK_LINK_DIRECTORIES})
 
 add_subdirectory(Core)
 add_subdirectory(Modules)
 
 if(MITK_USE_BLUEBERRY)
 
   find_package(BlueBerry REQUIRED)
 
   set(MITK_DEFAULT_SUBPROJECTS MITK-Plugins)
 
   # Plug-in testing (needs some work to be enabled again)
   if(BUILD_TESTING)
     include(berryTestingHelpers)
 
     set(BLUEBERRY_UI_TEST_APP "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/CoreApp")
     get_target_property(_is_macosx_bundle CoreApp MACOSX_BUNDLE)
     if(APPLE AND _is_macosx_bundle)
       set(BLUEBERRY_UI_TEST_APP "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/CoreApp.app/Contents/MacOS/CoreApp")
     endif()
 
     set(BLUEBERRY_TEST_APP_ID "org.mitk.qt.coreapplication")
   endif()
 
   include("${CMAKE_CURRENT_SOURCE_DIR}/Plugins/PluginList.cmake")
   set(mitk_plugins_fullpath )
   foreach(mitk_plugin ${MITK_EXT_PLUGINS})
     list(APPEND mitk_plugins_fullpath Plugins/${mitk_plugin})
   endforeach()
 
   if(EXISTS ${MITK_PRIVATE_MODULES}/PluginList.cmake)
     include(${MITK_PRIVATE_MODULES}/PluginList.cmake)
 
     foreach(mitk_plugin ${MITK_PRIVATE_PLUGINS})
       list(APPEND mitk_plugins_fullpath ${MITK_PRIVATE_MODULES}/${mitk_plugin})
     endforeach()
   endif() 
 
   # Specify which plug-ins belong to this project
   macro(GetMyTargetLibraries all_target_libraries varname)
     set(re_ctkplugin_mitk "^org_mitk_[a-zA-Z0-9_]+$")
     set(re_ctkplugin_bb "^org_blueberry_[a-zA-Z0-9_]+$")
     set(_tmp_list)
     list(APPEND _tmp_list ${all_target_libraries})
     ctkMacroListFilter(_tmp_list re_ctkplugin_mitk re_ctkplugin_bb OUTPUT_VARIABLE ${varname})
   endmacro()
 
   # Get infos about application directories and build options
   include("${CMAKE_CURRENT_SOURCE_DIR}/Applications/AppList.cmake")
   set(mitk_apps_fullpath )
   foreach(mitk_app ${MITK_APPS})
     list(APPEND mitk_apps_fullpath "${CMAKE_CURRENT_SOURCE_DIR}/Applications/${mitk_app}")
   endforeach()
 
   ctkMacroSetupPlugins(${mitk_plugins_fullpath}
                        BUILD_OPTION_PREFIX MITK_BUILD_
                        APPS ${mitk_apps_fullpath}
                        BUILD_ALL ${MITK_BUILD_ALL_PLUGINS}
                        COMPACT_OPTIONS)
 
   set(MITK_PLUGIN_USE_FILE "${MITK_BINARY_DIR}/MitkPluginUseFile.cmake")
   if(${PROJECT_NAME}_PLUGIN_LIBRARIES)
     ctkFunctionGeneratePluginUseFile(${MITK_PLUGIN_USE_FILE})
   else()
     file(REMOVE ${MITK_PLUGIN_USE_FILE})
     set(MITK_PLUGIN_USE_FILE )
   endif()
 
 endif()
 
 # Construct a list of paths containing runtime directories
 # for MITK applications on Windows
 set(MITK_RUNTIME_PATH 
     "${VTK_LIBRARY_DIRS}/%VS_BUILD_TYPE%;${ITK_LIBRARY_DIRS}/%VS_BUILD_TYPE%;${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/%VS_BUILD_TYPE%"
     )
 
 if(QT4_FOUND)
   set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${QT_LIBRARY_DIR}/../bin")
 endif()
 
 if(MITK_USE_BLUEBERRY)
   set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${CTK_RUNTIME_LIBRARY_DIRS}/%VS_BUILD_TYPE%")
   if(DEFINED CTK_PLUGIN_RUNTIME_OUTPUT_DIRECTORY)
     if(IS_ABSOLUTE "${CTK_PLUGIN_RUNTIME_OUTPUT_DIRECTORY}")
       set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${CTK_PLUGIN_RUNTIME_OUTPUT_DIRECTORY}/%VS_BUILD_TYPE%")
     else()
       set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${CTK_PLUGIN_RUNTIME_OUTPUT_DIRECTORY}/%VS_BUILD_TYPE%")
     endif()
   else()
     set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/plugins/%VS_BUILD_TYPE%")
   endif()
 endif()
 
 if(GDCM_DIR)
   set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${GDCM_DIR}/bin/%VS_BUILD_TYPE%")
 endif()
 
 if(OpenCV_DIR)
   set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${OpenCV_DIR}/bin/%VS_BUILD_TYPE%")
 endif()
 
 # DCMTK is statically build
 #if(DCMTK_DIR)
 #  set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${DCMTK_DIR}/bin/%VS_BUILD_TYPE%")
 #endif()
 
 if(MITK_USE_Boost AND MITK_USE_Boost_LIBRARIES AND NOT MITK_USE_SYSTEM_Boost)
   set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${Boost_LIBRARY_DIRS}")
 endif()
 
 #-----------------------------------------------------------------------------
 # Python Wrapping
 #-----------------------------------------------------------------------------
 
 set(MITK_WRAPPING_SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/Wrapping)
 set(MITK_WRAPPING_BINARY_DIR ${CMAKE_CURRENT_BINARY_DIR}/Wrapping)
 option(MITK_USE_Python "Build cswig Python wrapper support (requires CableSwig)." OFF)
 if(MITK_USE_Python)
   add_subdirectory(Wrapping)
 endif()
 
 #-----------------------------------------------------------------------------
 # Documentation
 #-----------------------------------------------------------------------------
 
 add_subdirectory(Documentation)
 
 #-----------------------------------------------------------------------------
 # Installation
 #-----------------------------------------------------------------------------
 
 
 # set MITK cpack variables
 # These are the default variables, which can be overwritten ( see below )
 include(mitkSetupCPack)
 
 include("${CMAKE_CURRENT_SOURCE_DIR}/Applications/AppList.cmake")
 
 # Check how many apps have been enabled
 # If more than one app has been activated, the we use the 
 # default CPack configuration. Otherwise that apps configuration
 # will be used, if present.
 
-set( activated_apps_no 0 )
-set( use_project_cpack NOT ${MITK_BUILD_ALL_APPS} )
-set( use_default_config ON )
+set(activated_apps_no 0)
+set(use_default_config ON)
+list(LENGTH MITK_APPS app_count)
 
 foreach(mitk_app ${MITK_APPS})
   # extract option_name
   string(REPLACE "^^" "\\;" target_info ${mitk_app})
   set(target_info_list ${target_info})
   list(GET target_info_list 1 option_name)
   # check if the application is enabled
   if(${option_name})
-    MATH( EXPR activated_apps_no "${activated_apps_no} + 1" )
+    MATH(EXPR activated_apps_no "${activated_apps_no} + 1")
   endif()
 endforeach()
 
-if( NOT activated_apps_no EQUAL 1 )
-  set( use_project_cpack OFF )
+if(app_count EQUAL 1 AND (activated_apps_no EQUAL 1 OR MITK_BUILD_ALL_APPS))
+  # Corner case if there is only one app in total
+  set(use_project_cpack ON)
+elseif(activated_apps_no EQUAL 1 AND NOT MITK_BUILD_ALL_APPS)
+  # Only one app is enabled (no "build all" flag set)
+  set(use_project_cpack ON)
+else()
+  # Less or more then one app is enabled
+  set(use_project_cpack OFF)
 endif()
 
 foreach(mitk_app ${MITK_APPS})
   # extract target_dir and option_name
   string(REPLACE "^^" "\\;" target_info ${mitk_app})
   set(target_info_list ${target_info})
   list(GET target_info_list 0 target_dir)
   list(GET target_info_list 1 option_name)
   # check if the application is enabled
-  if( ${option_name} )
+  if(${option_name})
     # check whether application specific configuration files will be used
-	if ( use_project_cpack )
-	  # use files if they exist
-      if( EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/Applications/${target_dir}/CPackOptions.cmake" )
-	    include( "${CMAKE_CURRENT_SOURCE_DIR}/Applications/${target_dir}/CPackOptions.cmake" )
+    if(use_project_cpack)
+      # use files if they exist
+      if(EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/Applications/${target_dir}/CPackOptions.cmake")
+        include("${CMAKE_CURRENT_SOURCE_DIR}/Applications/${target_dir}/CPackOptions.cmake")
       endif()
-	  
-	  if( EXISTS "${PROJECT_SOURCE_DIR}/Applications/${target_dir}/CPackConfig.cmake.in" )
-	    configure_file(${PROJECT_SOURCE_DIR}/Applications/${target_dir}/CPackConfig.cmake.in ${PROJECT_BINARY_DIR}/Applications/${target_dir}/CPackConfig.cmake @ONLY)
+
+      if(EXISTS "${PROJECT_SOURCE_DIR}/Applications/${target_dir}/CPackConfig.cmake.in")
         set(CPACK_PROJECT_CONFIG_FILE "${PROJECT_BINARY_DIR}/Applications/${target_dir}/CPackConfig.cmake")
-		set( use_default_config OFF )
+        configure_file(${PROJECT_SOURCE_DIR}/Applications/${target_dir}/CPackConfig.cmake.in
+                       ${CPACK_PROJECT_CONFIG_FILE} @ONLY)
+        set(use_default_config OFF)
       endif()
-	endif()
-	# add link to the list
-	list(APPEND CPACK_CREATE_DESKTOP_LINKS "${target_dir}")
+    endif()
+  # add link to the list
+  list(APPEND CPACK_CREATE_DESKTOP_LINKS "${target_dir}")
   endif()
 endforeach()
 
 # if no project specific configuration file was used, use default
-if( use_default_config )
+if(use_default_config)
   configure_file(${MITK_SOURCE_DIR}/MITKCPackOptions.cmake.in
-               ${MITK_BINARY_DIR}/MITKCPackOptions.cmake @ONLY)
+                 ${MITK_BINARY_DIR}/MITKCPackOptions.cmake @ONLY)
   set(CPACK_PROJECT_CONFIG_FILE "${MITK_BINARY_DIR}/MITKCPackOptions.cmake")
 endif()
 
 # include CPack model once all variables are set
 include(CPack)
 
 # Additional installation rules
 include(mitkInstallRules)
 
 #-----------------------------------------------------------------------------
 # Last configuration steps
 #-----------------------------------------------------------------------------
 
 set(MITK_EXPORTS_FILE "${MITK_BINARY_DIR}/MitkExports.cmake")
 file(REMOVE ${MITK_EXPORTS_FILE})
 
 if(MITK_USE_BLUEBERRY)
   # This is for installation support of external projects depending on
   # MITK plugins. The export file should not be used for linking to MITK
   # libraries without using LINK_DIRECTORIES, since the exports are incomplete
   # yet(depending libraries are not exported).
   if(MITK_PLUGIN_LIBRARIES)
     export(TARGETS ${MITK_PLUGIN_LIBRARIES}
            APPEND
            FILE ${MITK_EXPORTS_FILE})
   endif()
 endif()
 
 configure_file(${MITK_SOURCE_DIR}/CMake/ToolExtensionITKFactory.cpp.in
                ${MITK_BINARY_DIR}/ToolExtensionITKFactory.cpp.in COPYONLY)
 configure_file(${MITK_SOURCE_DIR}/CMake/ToolExtensionITKFactoryLoader.cpp.in
                ${MITK_BINARY_DIR}/ToolExtensionITKFactoryLoader.cpp.in COPYONLY)
 configure_file(${MITK_SOURCE_DIR}/CMake/ToolGUIExtensionITKFactory.cpp.in
                ${MITK_BINARY_DIR}/ToolGUIExtensionITKFactory.cpp.in COPYONLY)
 
 configure_file(mitkVersion.h.in ${MITK_BINARY_DIR}/mitkVersion.h)
 configure_file(mitkConfig.h.in ${MITK_BINARY_DIR}/mitkConfig.h)
 
 set(VECMATH_INCLUDE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/Utilities/vecmath)
 set(IPFUNC_INCLUDE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/Utilities/ipFunc)
 set(UTILITIES_DIR ${CMAKE_CURRENT_SOURCE_DIR}/Utilities)
 
 file(GLOB _MODULES_CONF_FILES RELATIVE ${PROJECT_BINARY_DIR}/${MODULES_CONF_DIRNAME} ${PROJECT_BINARY_DIR}/${MODULES_CONF_DIRNAME}/*.cmake)
 set(MITK_MODULE_NAMES)
 foreach(_module ${_MODULES_CONF_FILES})
   string(REPLACE Config.cmake "" _module_name ${_module})
   list(APPEND MITK_MODULE_NAMES ${_module_name})
 endforeach() 
 
 configure_file(mitkConfig.h.in ${MITK_BINARY_DIR}/mitkConfig.h)
 configure_file(MITKConfig.cmake.in ${MITK_BINARY_DIR}/MITKConfig.cmake @ONLY)
 
 # If we are under Windows, create two batch files which correctly
 # set up the environment for the application and for Visual Studio
 if(WIN32)
   include(mitkFunctionCreateWindowsBatchScript)
   
   set(VS_SOLUTION_FILE "${PROJECT_BINARY_DIR}/${PROJECT_NAME}.sln")
   foreach(VS_BUILD_TYPE debug release)
     mitkFunctionCreateWindowsBatchScript("${MITK_SOURCE_DIR}/CMake/StartVS.bat.in"
       ${PROJECT_BINARY_DIR}/StartVS_${VS_BUILD_TYPE}.bat
       ${VS_BUILD_TYPE})
   endforeach()
 endif(WIN32)
 
 
 #-----------------------------------------------------------------------------
 # MITK Applications
 #-----------------------------------------------------------------------------
 
 # This must come after MITKConfig.h was generated, since applications
 # might do a find_package(MITK REQUIRED).
 add_subdirectory(Applications)