diff --git a/Modules/DICOMReader/src/mitkBaseDICOMReaderService.cpp b/Modules/DICOMReader/src/mitkBaseDICOMReaderService.cpp index 6a11ea49ca..bef9a7bb25 100644 --- a/Modules/DICOMReader/src/mitkBaseDICOMReaderService.cpp +++ b/Modules/DICOMReader/src/mitkBaseDICOMReaderService.cpp @@ -1,192 +1,199 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkBaseDICOMReaderService.h" #include #include #include #include #include #include #include #include #include #include #include #include #include namespace mitk { BaseDICOMReaderService::BaseDICOMReaderService(const std::string& description) : AbstractFileReader(CustomMimeType(IOMimeTypes::DICOM_MIMETYPE()), description) { } BaseDICOMReaderService::BaseDICOMReaderService(const mitk::CustomMimeType& customType, const std::string& description) : AbstractFileReader(customType, description) { } std::vector > BaseDICOMReaderService::Read() { std::vector result; //special handling of Philips 3D US DICOM. //Copied from DICOMSeriesReaderService std::string fileName = this->GetLocalFileName(); if (DicomSeriesReader::IsPhilips3DDicom(fileName)) { MITK_INFO << "it is a Philips3D US Dicom file" << std::endl; mitk::LocaleSwitch localeSwitch("C"); std::locale previousCppLocale(std::cin.getloc()); std::locale l("C"); std::cin.imbue(l); DataNode::Pointer node = DataNode::New(); mitk::DicomSeriesReader::StringContainer stringvec; stringvec.push_back(fileName); if (DicomSeriesReader::LoadDicomSeries(stringvec, *node)) { BaseData::Pointer data = node->GetData(); StringProperty::Pointer nameProp = StringProperty::New(itksys::SystemTools::GetFilenameName(fileName)); data->GetPropertyList()->SetProperty("name", nameProp); result.push_back(data); } std::cin.imbue(previousCppLocale); return result; } //Normal DICOM handling (It wasn't a Philips 3D US) mitk::StringList relevantFiles = this->GetRelevantFiles(); // check whether directory or file // if directory try to find first file within it instead // We only support this for a single directory at once if (relevantFiles.empty()) { bool pathIsDirectory = itksys::SystemTools::FileIsDirectory(this->GetLocalFileName()); if (pathIsDirectory) { itksys::Directory input; input.Load(this->GetLocalFileName().c_str()); std::vector files; for (unsigned long idx = 0; idxGetLocalFileName() + "/" + std::string(input.GetFile(idx)); files.push_back(fullpath.c_str()); } } relevantFiles = files; } } if (relevantFiles.empty()) { MITK_INFO << "DICOMReader service found no relevant files in specified location. No data is loaded. Location: "<GetReader(relevantFiles); if(reader.IsNull()) { MITK_INFO << "DICOMReader service found no suitable reader configuration for relevant files."; } else { + const unsigned int ntotalfiles = relevantFiles.size(); + + for( unsigned int i=0; i< ntotalfiles; i++) + { + m_ReadFiles.push_back( relevantFiles.at(i) ); + } + reader->SetAdditionalTagsOfInterest(mitk::GetCurrentDICOMTagsOfInterest()); reader->SetTagLookupTableToPropertyFunctor(mitk::GetDICOMPropertyForDICOMValuesFunctor); reader->SetInputFiles(relevantFiles); mitk::DICOMDCMTKTagScanner::Pointer scanner = mitk::DICOMDCMTKTagScanner::New(); scanner->AddTagPaths(reader->GetTagsOfInterest()); scanner->SetInputFiles(relevantFiles); scanner->Scan(); reader->SetTagCache(scanner->GetScanCache()); reader->AnalyzeInputFiles(); reader->LoadImages(); for (unsigned int i = 0; i < reader->GetNumberOfOutputs(); ++i) { const mitk::DICOMImageBlockDescriptor& desc = reader->GetOutput(i); mitk::BaseData::Pointer data = desc.GetMitkImage().GetPointer(); std::string nodeName = "Unnamed_DICOM"; std::string studyDescription = desc.GetPropertyAsString("studyDescription"); std::string seriesDescription = desc.GetPropertyAsString("seriesDescription"); if (!studyDescription.empty()) { nodeName = studyDescription; } if (!seriesDescription.empty()) { if (!studyDescription.empty()) { nodeName += "/"; } nodeName += seriesDescription; } StringProperty::Pointer nameProp = StringProperty::New(nodeName); data->SetProperty("name", nameProp); result.push_back(data); } } } return result; } StringList BaseDICOMReaderService::GetRelevantFiles() const { std::string fileName = this->GetLocalFileName(); mitk::StringList relevantFiles = mitk::GetDICOMFilesInSameDirectory(fileName); return relevantFiles; } IFileReader::ConfidenceLevel BaseDICOMReaderService::GetConfidenceLevel() const { IFileReader::ConfidenceLevel abstractConfidence = AbstractFileReader::GetConfidenceLevel(); if (Unsupported == abstractConfidence) { if (itksys::SystemTools::FileIsDirectory(this->GetInputLocation().c_str())) { // In principle we support dicom directories return Supported; } } return abstractConfidence; } }